Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7621
Gene name
LocationContig_452:14777..15320
Strand-
Gene length (bp)543
Transcript length (bp)543
Coding sequence length (bp)543
Protein length (aa) 181

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Peroxisome 0.5609 0.3888 0.4733 0.2601 0.3142 0.0314 0.5936 0.2199 0.2477 0.8141

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 83 105 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup10415
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|7621 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7621
MHVIQLMERGPDELRAKIDETVGVTGWTDTLAQHILQALQMTLMEGRERMGPALTHCYDNAVGAAQQEFDHLCRL
AKDHPGQTVAAVFLTILALGVLVELLLLVVELLGFGELGPVEGRQSGLSVPFQELIDRLRFFCVMVGVDVPGLHT
PGLALLLLPEVGHDLGSRLGDATSVLRFSS*
Coding >Hirsu2|7621
ATGCATGTGATACAACTAATGGAGAGGGGTCCTGATGAGCTGAGAGCGAAGATTGATGAGACCGTTGGTGTGACC
GGTTGGACCGATACACTCGCCCAGCACATCCTGCAGGCATTGCAAATGACACTGATGGAAGGCCGCGAGAGGATG
GGCCCAGCTTTGACTCATTGCTACGATAATGCAGTAGGCGCGGCACAGCAAGAGTTCGACCACCTGTGCAGGCTG
GCGAAGGACCACCCCGGACAAACGGTCGCAGCCGTGTTTCTTACGATTCTCGCTCTTGGTGTGTTAGTGGAATTG
TTGCTACTTGTCGTCGAGCTGCTTGGATTCGGCGAACTTGGACCGGTAGAAGGTAGACAGTCTGGCCTCTCAGTC
CCCTTTCAAGAGCTTATTGATCGCCTAAGGTTCTTTTGCGTCATGGTGGGAGTCGATGTACCGGGGCTACATACC
CCGGGGCTCGCTCTTCTCCTTCTTCCAGAGGTTGGGCATGACTTGGGATCACGCCTAGGCGACGCGACGTCCGTA
TTGCGGTTCTCGAGTTAG
Transcript >Hirsu2|7621
ATGCATGTGATACAACTAATGGAGAGGGGTCCTGATGAGCTGAGAGCGAAGATTGATGAGACCGTTGGTGTGACC
GGTTGGACCGATACACTCGCCCAGCACATCCTGCAGGCATTGCAAATGACACTGATGGAAGGCCGCGAGAGGATG
GGCCCAGCTTTGACTCATTGCTACGATAATGCAGTAGGCGCGGCACAGCAAGAGTTCGACCACCTGTGCAGGCTG
GCGAAGGACCACCCCGGACAAACGGTCGCAGCCGTGTTTCTTACGATTCTCGCTCTTGGTGTGTTAGTGGAATTG
TTGCTACTTGTCGTCGAGCTGCTTGGATTCGGCGAACTTGGACCGGTAGAAGGTAGACAGTCTGGCCTCTCAGTC
CCCTTTCAAGAGCTTATTGATCGCCTAAGGTTCTTTTGCGTCATGGTGGGAGTCGATGTACCGGGGCTACATACC
CCGGGGCTCGCTCTTCTCCTTCTTCCAGAGGTTGGGCATGACTTGGGATCACGCCTAGGCGACGCGACGTCCGTA
TTGCGGTTCTCGAGTTAG
Gene >Hirsu2|7621
ATGCATGTGATACAACTAATGGAGAGGGGTCCTGATGAGCTGAGAGCGAAGATTGATGAGACCGTTGGTGTGACC
GGTTGGACCGATACACTCGCCCAGCACATCCTGCAGGCATTGCAAATGACACTGATGGAAGGCCGCGAGAGGATG
GGCCCAGCTTTGACTCATTGCTACGATAATGCAGTAGGCGCGGCACAGCAAGAGTTCGACCACCTGTGCAGGCTG
GCGAAGGACCACCCCGGACAAACGGTCGCAGCCGTGTTTCTTACGATTCTCGCTCTTGGTGTGTTAGTGGAATTG
TTGCTACTTGTCGTCGAGCTGCTTGGATTCGGCGAACTTGGACCGGTAGAAGGTAGACAGTCTGGCCTCTCAGTC
CCCTTTCAAGAGCTTATTGATCGCCTAAGGTTCTTTTGCGTCATGGTGGGAGTCGATGTACCGGGGCTACATACC
CCGGGGCTCGCTCTTCTCCTTCTTCCAGAGGTTGGGCATGACTTGGGATCACGCCTAGGCGACGCGACGTCCGTA
TTGCGGTTCTCGAGTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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