© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|762 |
| Gene name | |
| Location | Contig_1157:45..488 |
| Strand | + |
| Gene length (bp) | 443 |
| Transcript length (bp) | 357 |
| Coding sequence length (bp) | 357 |
| Protein length (aa) | 119 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08031 | BBE | Berberine and berberine like | 2.8E-10 | 74 | 118 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0055114 | oxidation-reduction process | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0050662 | coenzyme binding | No |
| GO:0005488 | binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043168 | anion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0008150 | biological_process | No |
| GO:0048037 | cofactor binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|762 LSALPDEAAGWGEWHAWNAAGPRDQSAFAWRAAAYAHLEFILTGSADAAKQSAYRRWADDLEHFLRPRAGPASYP GYMDAGISTSPLESYYGHNVPRLSTIKHKYDPSGFFDNPLSIR* |
| Coding | >Hirsu2|762 CTGTCCGCCTTGCCGGACGAGGCCGCCGGCTGGGGCGAGTGGCACGCCTGGAATGCCGCCGGCCCGCGCGACCAG TCCGCCTTCGCCTGGCGCGCCGCCGCCTACGCCCACCTCGAGTTCATCCTCACCGGCTCCGCCGACGCCGCCAAG CAGAGCGCCTACCGCCGCTGGGCCGACGACCTCGAGCACTTCCTCCGCCCGCGCGCCGGGCCTGCTTCGTATCCC GGATACATGGATGCCGGCATCTCCACCAGCCCTCTCGAGTCGTATTACGGCCACAACGTGCCCCGGCTGTCCACC ATCAAGCACAAGTACGATCCCTCTGGCTTCTTCGACAACCCCCTGAGCATCCGCTAG |
| Transcript | >Hirsu2|762 CTGTCCGCCTTGCCGGACGAGGCCGCCGGCTGGGGCGAGTGGCACGCCTGGAATGCCGCCGGCCCGCGCGACCAG TCCGCCTTCGCCTGGCGCGCCGCCGCCTACGCCCACCTCGAGTTCATCCTCACCGGCTCCGCCGACGCCGCCAAG CAGAGCGCCTACCGCCGCTGGGCCGACGACCTCGAGCACTTCCTCCGCCCGCGCGCCGGGCCTGCTTCGTATCCC GGATACATGGATGCCGGCATCTCCACCAGCCCTCTCGAGTCGTATTACGGCCACAACGTGCCCCGGCTGTCCACC ATCAAGCACAAGTACGATCCCTCTGGCTTCTTCGACAACCCCCTGAGCATCCGCTAG |
| Gene | >Hirsu2|762 CTGTCCGCCTTGCCGGACGAGGCCGCCGGCTGGGGCGAGTGGCACGCCTGGAATGCCGCCGGCCCGCGCGACCAG TCCGCCTTCGCCTGGCGCGCCGCCGCCTACGCCCACCTCGAGTTCATCCTCACCGGCTCCGCCGACGCCGCCAAG CAGAGCGCCTACCGCCGCTGGGCCGACGACCTCGAGCACTTCCTCCGCCCGCGCGCCGGGTATGCCCGTCCCTTG CTTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCGCCGCGGCCGTCTGCTAATCTTCGTCCTTGCCGCCTAGGCCTG CTTCGTATCCCGGATACATGGATGCCGGCATCTCCACCAGCCCTCTCGAGTCGTATTACGGCCACAACGTGCCCC GGCTGTCCACCATCAAGCACAAGTACGATCCCTCTGGCTTCTTCGACAACCCCCTGAGCATCCGCTAG |