© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7610 |
| Gene name | |
| Location | Contig_450:2519..4819 |
| Strand | - |
| Gene length (bp) | 2300 |
| Transcript length (bp) | 1581 |
| Coding sequence length (bp) | 1581 |
| Protein length (aa) | 527 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00474 | SSF | Sodium:solute symporter family | 4.1E-10 | 44 | 203 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7XBS0|DUR3_ORYSJ | Urea-proton symporter DUR3 OS=Oryza sativa subsp. japonica GN=DUR3 PE=1 SV=1 | 2 | 188 | 2.0E-06 |
| sp|O94469|DUR31_SCHPO | Probable urea active transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dur3-1 PE=3 SV=1 | 27 | 198 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 47 | 69 | 22 |
| 3 | 79 | 101 | 22 |
| 4 | 122 | 141 | 19 |
| 5 | 161 | 183 | 22 |
| 6 | 190 | 207 | 17 |
| 7 | 227 | 249 | 22 |
| 8 | 269 | 291 | 22 |
| 9 | 311 | 333 | 22 |
| 10 | 354 | 373 | 19 |
| 11 | 378 | 400 | 22 |
| 12 | 413 | 435 | 22 |
| 13 | 455 | 477 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7610 MGQPATAASNAIIYVTYGAFLITGTGIAWTMRRQSKREFLSSNGTQSAFPLALNFIASAFGTGILFSYPELATVA GVQGVIVYAFASSLPMLVFGAVGPVIRRKCPSGFVLTEWTRQRYGSVTMLYLSFLTLLTLFLYMVADLSALGQVV EALTGLDKLPVIIVECFVTTVYTSLGGFRISFLTDAIQGAMVVGLLILATITIGVKTDIRPELIDSSGLTRPSLL GWQLLYILPVAVVTNDFFLSSFWLRTFSSRSDRDLWVAVSLSTAVLLCATTLVGCTGLIAVWSGAWPGSGAAAAA PPPPLFALLERMPGWVVGVVLVMTVTLSTAAFDSLQSAMVSSASNDLFRNRLSIWYTRAMVVAVIVPVVVVALKA ASILQIYLICDLLSAATVPVLCVGLVDRFHFWRGFEVVVGGLGGVLSVFVFGTVYLGSAAEGARLLILQRGLYAS DWSAFGAFVAAPLGGLLCGLAALGLRLAFQFVRARAAGERFDALDRPPADTQEIVGDDPDAPPEAAVTVSKPGKF F* |
| Coding | >Hirsu2|7610 ATGGGCCAGCCAGCGACTGCGGCGTCCAACGCCATCATCTACGTCACGTATGGCGCCTTCTTGATTACGGGTACC GGCATTGCCTGGACCATGAGGAGACAGAGCAAGAGAGAGTTTCTGTCGAGCAACGGAACGCAATCTGCGTTTCCT CTCGCCCTCAACTTCATCGCGTCTGCCTTCGGCACCGGCATCCTCTTCTCCTATCCGGAGCTCGCCACCGTCGCC GGCGTGCAGGGCGTCATCGTCTATGCCTTTGCCTCGTCGCTGCCGATGCTGGTGTTTGGGGCCGTGGGCCCCGTC ATCCGGCGCAAGTGCCCTTCGGGCTTCGTCCTGACGGAGTGGACGCGCCAGCGCTACGGCAGCGTCACCATGCTC TACCTCAGCTTCCTCACCCTCCTCACCCTCTTCCTGTACATGGTGGCCGACCTGTCGGCGCTGGGGCAGGTCGTC GAGGCCCTGACGGGGCTCGACAAGCTGCCCGTCATCATCGTCGAGTGCTTCGTCACGACCGTCTACACCTCTCTC GGCGGCTTCCGAATCTCCTTCCTGACCGACGCCATCCAGGGCGCCATGGTGGTCGGGCTCCTGATCCTGGCGACC ATCACCATCGGGGTCAAGACGGACATCCGGCCGGAGCTGATCGACTCGTCGGGCCTGACCAGGCCCTCGCTGCTC GGCTGGCAGCTGCTGTACATCCTCCCCGTCGCCGTCGTCACCAACGACTTCTTCCTCTCCAGCTTCTGGCTGCGG ACCTTCTCGTCGCGGTCGGACCGGGACCTGTGGGTGGCCGTCTCGCTCTCGACGGCCGTCCTCCTGTGCGCCACC ACCCTCGTCGGCTGCACGGGGCTGATCGCCGTCTGGTCGGGCGCGTGGCCGGGCAGCGGCGCGGCCGCCGCCGCG CCGCCGCCGCCGCTGTTCGCCCTGCTGGAGCGGATGCCGGGCTGGGTGGTGGGCGTCGTGCTGGTGATGACGGTG ACGCTGAGCACGGCCGCCTTCGACAGCCTGCAGTCGGCCATGGTCTCGTCGGCGTCCAACGACCTGTTCCGCAAC CGGCTGAGCATCTGGTACACGCGCGCCATGGTCGTCGCCGTCATCGTCCCCGTCGTCGTCGTCGCCCTCAAGGCC GCCTCCATCCTGCAGATCTACCTCATCTGCGACCTGCTGTCGGCCGCCACCGTGCCCGTCCTGTGCGTCGGCCTC GTCGACCGCTTCCACTTCTGGCGCGGCTTCGAGGTCGTCGTCGGCGGCCTCGGCGGCGTCCTCAGCGTCTTCGTC TTCGGCACCGTCTACCTCGGCTCCGCCGCCGAGGGCGCCCGCCTGCTCATCCTCCAGCGCGGCCTGTACGCCAGC GACTGGAGCGCCTTTGGCGCCTTCGTCGCCGCCCCGCTCGGCGGCCTGCTCTGCGGCCTCGCCGCCCTCGGCCTG CGGCTGGCCTTCCAGTTCGTCAGGGCCCGGGCCGCGGGCGAGCGCTTCGACGCCCTGGACCGGCCCCCCGCCGAC ACCCAAGAGATCGTCGGCGACGACCCGGACGCTCCGCCCGAGGCGGCCGTGACGGTCTCGAAGCCGGGCAAGTTC TTCTAG |
| Transcript | >Hirsu2|7610 ATGGGCCAGCCAGCGACTGCGGCGTCCAACGCCATCATCTACGTCACGTATGGCGCCTTCTTGATTACGGGTACC GGCATTGCCTGGACCATGAGGAGACAGAGCAAGAGAGAGTTTCTGTCGAGCAACGGAACGCAATCTGCGTTTCCT CTCGCCCTCAACTTCATCGCGTCTGCCTTCGGCACCGGCATCCTCTTCTCCTATCCGGAGCTCGCCACCGTCGCC GGCGTGCAGGGCGTCATCGTCTATGCCTTTGCCTCGTCGCTGCCGATGCTGGTGTTTGGGGCCGTGGGCCCCGTC ATCCGGCGCAAGTGCCCTTCGGGCTTCGTCCTGACGGAGTGGACGCGCCAGCGCTACGGCAGCGTCACCATGCTC TACCTCAGCTTCCTCACCCTCCTCACCCTCTTCCTGTACATGGTGGCCGACCTGTCGGCGCTGGGGCAGGTCGTC GAGGCCCTGACGGGGCTCGACAAGCTGCCCGTCATCATCGTCGAGTGCTTCGTCACGACCGTCTACACCTCTCTC GGCGGCTTCCGAATCTCCTTCCTGACCGACGCCATCCAGGGCGCCATGGTGGTCGGGCTCCTGATCCTGGCGACC ATCACCATCGGGGTCAAGACGGACATCCGGCCGGAGCTGATCGACTCGTCGGGCCTGACCAGGCCCTCGCTGCTC GGCTGGCAGCTGCTGTACATCCTCCCCGTCGCCGTCGTCACCAACGACTTCTTCCTCTCCAGCTTCTGGCTGCGG ACCTTCTCGTCGCGGTCGGACCGGGACCTGTGGGTGGCCGTCTCGCTCTCGACGGCCGTCCTCCTGTGCGCCACC ACCCTCGTCGGCTGCACGGGGCTGATCGCCGTCTGGTCGGGCGCGTGGCCGGGCAGCGGCGCGGCCGCCGCCGCG CCGCCGCCGCCGCTGTTCGCCCTGCTGGAGCGGATGCCGGGCTGGGTGGTGGGCGTCGTGCTGGTGATGACGGTG ACGCTGAGCACGGCCGCCTTCGACAGCCTGCAGTCGGCCATGGTCTCGTCGGCGTCCAACGACCTGTTCCGCAAC CGGCTGAGCATCTGGTACACGCGCGCCATGGTCGTCGCCGTCATCGTCCCCGTCGTCGTCGTCGCCCTCAAGGCC GCCTCCATCCTGCAGATCTACCTCATCTGCGACCTGCTGTCGGCCGCCACCGTGCCCGTCCTGTGCGTCGGCCTC GTCGACCGCTTCCACTTCTGGCGCGGCTTCGAGGTCGTCGTCGGCGGCCTCGGCGGCGTCCTCAGCGTCTTCGTC TTCGGCACCGTCTACCTCGGCTCCGCCGCCGAGGGCGCCCGCCTGCTCATCCTCCAGCGCGGCCTGTACGCCAGC GACTGGAGCGCCTTTGGCGCCTTCGTCGCCGCCCCGCTCGGCGGCCTGCTCTGCGGCCTCGCCGCCCTCGGCCTG CGGCTGGCCTTCCAGTTCGTCAGGGCCCGGGCCGCGGGCGAGCGCTTCGACGCCCTGGACCGGCCCCCCGCCGAC ACCCAAGAGATCGTCGGCGACGACCCGGACGCTCCGCCCGAGGCGGCCGTGACGGTCTCGAAGCCGGGCAAGTTC TTCTAG |
| Gene | >Hirsu2|7610 ATGGGCCAGCCAGCGACTGCGGCGTCCAACGCCATCATCTACGTCACGTATGGCGCCTTCTTGTAAGAACAGCCT GCGCCCTTTGCCGCGTCAGAGGCGGGCGGGAGAGGCTGACCGGGACGGGTGCGGGGACGGCATCAGGATTACGGG TACCGGCATTGCCTGGACCATGAGGAGACAGAGCAAGAGAGAGTTTCTGTCGAGCAACGGAACGCAATCTGGTCG GCGATGTCCCTTCCCCGAGCGCTGCTGGTACGGGCTAACGCAGCGCGACAGCGTTTCCTCTCGCCCTCAACTTCA TCGCGTCTGGTGAGTAGAGCGTCTCGTCACAAGGAGGAGAGCGGTGGCCTTTTCCCGGCCGTGGGCGCGGCATGG CAGGTCCACGGCGCGCGCGGTCCGGGTGGCTGGGCATATGATGCGTTGAGCAACGGGTAGGTTCGTTCGTACCCT GGGACTCTGTCTTCGCCTCTCGATGCACGAGTCGCCCTCCCCCCCTCCTCCTTTTTCACCCACGGAGACTTGCGA TGGGCCCGAGGCGCGAGAGAGAGAGAGCGGGAGCGGGAGCGGCTCCGCGATGCGCGAGGGGCGAGGACGCGGCTC ACTACGGGCGCCGAGTTGGAGCGGCGCGAGGCATCCAACCTCCCCGGTCCGAAGGGGGGGAGATGCCGGCACGCG ACAACGAAGCTGAGATTGCACCGTCATACTCGATCAAGTTAATGCTTGCGTGGGAAACGTGCTGCCGCTCACCCT TCCCCCGCCCCTTTGGTGCATTCCCGAACTGACAGCAGGAAAGCCTTCGGCACCGGCATCCTCTTCTCCTATCCG GAGCTCGCCACCGTCGCCGGCGTGCAGGGCGTCATCGTCTATGCCTTTGCCTCGTCGCTGCCGATGCTGGTGTTT GGGGCCGTGGGCCCCGTCATCCGGCGCAAGTGCCCTTCGGGCTTCGTCCTGACGGAGTGGACGCGCCAGCGCTAC GGCAGCGTCACCATGCTCTACCTCAGCTTCCTCACCCTCCTCACCCTCTTCCTGTACATGGTGGCCGACCTGTCG GCGCTGGGGCAGGTCGTCGAGGCCCTGACGGGGCTCGACAAGCTGCCCGTCATCATCGTCGAGTGCTTCGTCACG ACCGTCTACACCTGTGAGCCTCCTCTCCACCTCTGCCCGACGGCTCTCGCGGCGCGGCTGCGCGACATTTCGGAT GGGGATACGCTGACGACGGCGGGCCGCGGCCCCCCTTAGCTCTCGGCGGCTTCCGAATCTCCTTCCTGACCGACG CCATCCAGGGCGCCATGGTGGTCGGGCTCCTGATCCTGGCGACCATCACCATCGGGGTCAAGACGGACATCCGGC CGGAGCTGATCGACTCGTCGGGCCTGACCAGGCCCTCGCTGCTCGGCTGGCAGCTGCTGTACATCCTCCCCGTCG CCGTCGTCACCAACGACTTCTTCCTCTCCAGCTTCTGGCTGCGGACCTTCTCGTCGCGGTCGGACCGGGACCTGT GGGTGGCCGTCTCGCTCTCGACGGCCGTCCTCCTGTGCGCCACCACCCTCGTCGGCTGCACGGGGCTGATCGCCG TCTGGTCGGGCGCGTGGCCGGGCAGCGGCGCGGCCGCCGCCGCGCCGCCGCCGCCGCTGTTCGCCCTGCTGGAGC GGATGCCGGGCTGGGTGGTGGGCGTCGTGCTGGTGATGACGGTGACGCTGAGCACGGCCGCCTTCGACAGCCTGC AGTCGGCCATGGTCTCGTCGGCGTCCAACGACCTGTTCCGCAACCGGCTGAGCATCTGGTACACGCGCGCCATGG TCGTCGCCGTCATCGTCCCCGTCGTCGTCGTCGCCCTCAAGGCCGCCTCCATCCTGCAGATCTACCTCATCTGCG ACCTGCTGTCGGCCGCCACCGTGCCCGTCCTGTGCGTCGGCCTCGTCGACCGCTTCCACTTCTGGCGCGGCTTCG AGGTCGTCGTCGGCGGCCTCGGCGGCGTCCTCAGCGTCTTCGTCTTCGGCACCGTCTACCTCGGCTCCGCCGCCG AGGGCGCCCGCCTGCTCATCCTCCAGCGCGGCCTGTACGCCAGCGACTGGAGCGCCTTTGGCGCCTTCGTCGCCG CCCCGCTCGGCGGCCTGCTCTGCGGCCTCGCCGCCCTCGGCCTGCGGCTGGCCTTCCAGTTCGTCAGGGCCCGGG CCGCGGGCGAGCGCTTCGACGCCCTGGACCGGCCCCCCGCCGACACCCAAGAGATCGTCGGCGACGACCCGGACG CTCCGCCCGAGGCGGCCGTGACGGTCTCGAAGCCGGGCAAGTTCTTCTAG |