© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7598 |
| Gene name | |
| Location | Contig_45:28434..29309 |
| Strand | + |
| Gene length (bp) | 875 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13398 | Peptidase_M50B | Peptidase M50B-like | 8.1E-61 | 41 | 242 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 53 | 19 |
| 2 | 60 | 82 | 22 |
| 3 | 102 | 124 | 22 |
| 4 | 129 | 151 | 22 |
| 5 | 156 | 178 | 22 |
| 6 | 183 | 200 | 17 |
| 7 | 229 | 251 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7598 MAPRALLPNVSFDESDRLHLLAARDLQNPTRTQQITLGVIAVYVVAIAILWNVPYLKMILWPFKMLVIAFHEFGH AITAVLTGGKVKSISLDPNEGGVTHMQGGISAITLPAGYLGSSIIGALLTFCGFNIVASKIASIVLGVCFLLTLW WGKRDWLTILTVLSAVGLLVACWFIVHAEALRFVVLFIGVMSSLYSVWDICDDLILRKVNSSDASVFAKRYGGSS QCWGVIWSIISILVMAVGIVAGLAAFSQSFEQQQQDSQHFLPT* |
| Coding | >Hirsu2|7598 ATGGCGCCTCGGGCCCTGCTGCCGAACGTCAGCTTCGACGAAAGCGACAGGCTCCATCTTCTCGCCGCCCGCGAC CTTCAGAACCCGACGCGCACGCAGCAGATCACTTTGGGCGTCATCGCCGTGTACGTCGTTGCCATCGCCATCCTG TGGAACGTCCCGTATCTCAAAATGATCCTCTGGCCCTTCAAGATGCTCGTCATCGCATTCCACGAATTCGGTCAT GCCATTACCGCTGTCCTGACCGGCGGGAAAGTCAAGTCCATCAGCCTCGATCCCAACGAAGGCGGCGTCACTCAC ATGCAGGGCGGCATCAGCGCCATCACCCTTCCCGCCGGCTACCTGGGCTCCTCAATCATCGGGGCCCTCCTCACC TTCTGTGGCTTCAACATCGTCGCCTCCAAGATAGCCAGCATTGTCCTCGGCGTCTGCTTCCTTCTCACCCTATGG TGGGGCAAGCGCGACTGGCTTACTATCCTCACCGTACTGAGTGCCGTCGGCCTTCTTGTGGCTTGCTGGTTCATC GTCCATGCCGAGGCGCTCCGCTTTGTCGTCCTCTTTATCGGCGTCATGTCCTCTCTGTACAGCGTGTGGGACATT TGCGACGACTTGATCCTCAGAAAGGTGAACTCGTCCGACGCCAGCGTCTTTGCCAAACGCTACGGCGGCTCTTCT CAGTGCTGGGGCGTCATCTGGTCCATCATCTCGATTCTTGTCATGGCCGTCGGCATTGTCGCCGGCCTGGCTGCC TTTTCTCAGTCTTTTGAGCAGCAGCAGCAGGACTCGCAACACTTCCTTCCCACCTAA |
| Transcript | >Hirsu2|7598 ATGGCGCCTCGGGCCCTGCTGCCGAACGTCAGCTTCGACGAAAGCGACAGGCTCCATCTTCTCGCCGCCCGCGAC CTTCAGAACCCGACGCGCACGCAGCAGATCACTTTGGGCGTCATCGCCGTGTACGTCGTTGCCATCGCCATCCTG TGGAACGTCCCGTATCTCAAAATGATCCTCTGGCCCTTCAAGATGCTCGTCATCGCATTCCACGAATTCGGTCAT GCCATTACCGCTGTCCTGACCGGCGGGAAAGTCAAGTCCATCAGCCTCGATCCCAACGAAGGCGGCGTCACTCAC ATGCAGGGCGGCATCAGCGCCATCACCCTTCCCGCCGGCTACCTGGGCTCCTCAATCATCGGGGCCCTCCTCACC TTCTGTGGCTTCAACATCGTCGCCTCCAAGATAGCCAGCATTGTCCTCGGCGTCTGCTTCCTTCTCACCCTATGG TGGGGCAAGCGCGACTGGCTTACTATCCTCACCGTACTGAGTGCCGTCGGCCTTCTTGTGGCTTGCTGGTTCATC GTCCATGCCGAGGCGCTCCGCTTTGTCGTCCTCTTTATCGGCGTCATGTCCTCTCTGTACAGCGTGTGGGACATT TGCGACGACTTGATCCTCAGAAAGGTGAACTCGTCCGACGCCAGCGTCTTTGCCAAACGCTACGGCGGCTCTTCT CAGTGCTGGGGCGTCATCTGGTCCATCATCTCGATTCTTGTCATGGCCGTCGGCATTGTCGCCGGCCTGGCTGCC TTTTCTCAGTCTTTTGAGCAGCAGCAGCAGGACTCGCAACACTTCCTTCCCACCTAA |
| Gene | >Hirsu2|7598 ATGGCGCCTCGGGCCCTGCTGCCGAACGTCAGCTTCGACGAAAGCGACAGGCTCCATCTTCTCGCCGCCCGCGAC CTTCAGAACCCGACGCGCACGCAGCAGATCACTTTGGGCGTCATCGCCGTGTACGTCGTTGCCATCGCCATCCTG TGGAACGTCCCGTATCTCAAAATGATCCTCTGGCCCTTCAAGGTGAGTTGGCTTCCGCCGGCCCGGCCGCCAAAT CGTCGCCCTGCCGCTAATCTCCGGTGTTCCTCCAGATGCTCGTCATCGCATTCCACGAATTCGGTCATGCCATTA CCGCTGTCCTGACCGGCGGGAAAGTCAAGTCCATCAGCCTCGATCCCAACGAAGGCGGCGTCACTCACATGCAGG GCGGCATCAGCGCCATCACCCTTCCCGCCGGCTACCTGGGCTCCTCAATCATCGGGGCCCTCCTCACCTTCTGTG GCTTCAACATCGTCGCCTCCAAGATAGCCAGCATTGTCCTCGGCGTCTGCTTCCTTCTCACCCTATGGTGGGGCA AGCGCGACTGGCTTACTATCCTCACCGTACTGAGTGCCGTCGGCCTTCTTGTGGCTTGCTGGTTCATCGTCCATG CCGAGGCGCTCCGCTTTGTCGTCCTCTTTATCGGCGTCATGTCCTCTCTGTACAGCGTGTGGGACATTTGCGACG ACTTGATCCTCAGAAAGGTGAACTCGTCCGACGCCAGCGTCTTTGCCAAACGCTACGGCGGCTCTTCTCAGTGCT GGGGCGTCATCTGGTCCATCATCTCGATTCTTGTCATGGCCGTCGGCATTGTCGCCGGCCTGGCTGCCTTTTCTC AGTCTTTTGAGCAGCAGCAGCAGGACTCGCAACACTTCCTTCCCACCTAA |