Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|759
Gene name
LocationContig_1156:1276..2434
Strand-
Gene length (bp)1158
Transcript length (bp)1158
Coding sequence length (bp)1158
Protein length (aa) 386

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-12 217 274

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP13 PE=1 SV=2 2 274 2.0E-39
sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnp24 PE=3 SV=2 29 273 4.0E-35
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 143 274 1.0E-12
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 143 274 2.0E-12
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 143 274 2.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP13 PE=1 SV=2 2 274 2.0E-39
sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnp24 PE=3 SV=2 29 273 4.0E-35
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 143 274 1.0E-12
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 143 274 2.0E-12
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 143 274 2.0E-12
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 143 274 9.0E-11
sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar2 PE=1 SV=2 191 273 9.0E-10
sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NOP12 PE=3 SV=2 215 273 7.0E-08
sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP12 PE=1 SV=1 215 273 2.0E-07
sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3 190 347 3.0E-07
sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1 216 274 4.0E-07
sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3 86 273 5.0E-07
sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 91 273 7.0E-07
sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2 216 274 9.0E-07
sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2 80 274 1.0E-06
sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1 216 274 1.0E-06
sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1 216 274 1.0E-06
sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1 216 274 1.0E-06
sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1 216 274 1.0E-06
sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1 216 274 1.0E-06
sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2 216 274 2.0E-06
sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1 216 283 2.0E-06
sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 80 273 2.0E-06
sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1 79 267 2.0E-06
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2 79 267 3.0E-06
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2 79 267 3.0E-06
sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2 208 273 3.0E-06
sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1 79 267 3.0E-06
sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1 91 267 3.0E-06
sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1 216 274 4.0E-06
sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1 216 274 4.0E-06
sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1 91 267 5.0E-06
sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1 91 269 9.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.2693 0.8743 0.0592 0.0108 0.0652 0.0043 0.0462 0.0062 0.0312 0.0012

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3847
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1141
Ophiocordyceps australis map64 (Brazil) OphauB2|7216
Ophiocordyceps camponoti-floridani Ophcf2|05490
Ophiocordyceps camponoti-rufipedis Ophun1|4983
Ophiocordyceps kimflemingae Ophio5|4033
Ophiocordyceps subramaniannii Hirsu2|759 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|759
MATKKESPAQAEIATSATATKRKSSIQEIEVDLSAPEPPSKRARRALKKGKTLAKRPVSEDEDEDDEDEVNVNGE
KGGKKDKDTARSEHGIWVGNLPFSATAASLRKWLVDHSGEAIADESITRIKLPTVKEPGRDRSRPPANRGFAYVD
FADLGPKVAAIALSETDMGGRKLLIKDAASFEGRPKKEKAPAEADGVADGRAAGTRKQDAPPASRKVFVGNLGFK
TTEDDLRRQFEKCGEMEWVKLATFEDTGKCKGYGWVKFRDAEAAAWAVKGFVKIREKVETEDDFAADDDDAATSD
AESPRQQQFRTRKWWVNRLLGRQLKLELAEDDQTRYKKRFGRAAPREPRAAAARPTQPPDEPTDLVVARLTGAVV
KHTGSKVTFD*
Coding >Hirsu2|759
ATGGCGACCAAAAAGGAAAGCCCGGCGCAGGCAGAGATCGCGACCAGCGCGACCGCGACCAAGCGCAAGTCCAGC
ATCCAGGAGATCGAGGTCGACCTATCGGCACCGGAACCGCCGTCGAAGCGAGCCCGCCGCGCGCTCAAGAAGGGG
AAGACCCTAGCGAAGAGGCCGGTCAGCGAGGACGAGGACGAGGACGACGAGGACGAGGTCAACGTCAACGGGGAA
AAGGGGGGCAAGAAGGACAAAGACACGGCCCGGTCGGAGCACGGCATCTGGGTCGGCAACCTGCCCTTCTCCGCC
ACAGCCGCGTCGCTGCGCAAATGGCTCGTTGACCACTCGGGCGAGGCGATCGCGGACGAGTCCATCACGCGCATC
AAGCTGCCGACCGTCAAGGAGCCCGGCCGGGACCGGAGCCGACCGCCGGCGAACAGGGGCTTCGCCTACGTCGAC
TTCGCCGACCTGGGCCCCAAGGTGGCCGCCATCGCCCTGTCCGAGACGGACATGGGCGGCCGCAAGCTCCTCATC
AAGGACGCCGCCTCCTTCGAAGGCCGGCCCAAGAAGGAGAAGGCGCCAGCGGAGGCGGATGGCGTGGCGGACGGC
CGCGCAGCCGGGACCCGGAAACAAGACGCTCCGCCCGCGAGCCGCAAGGTCTTCGTCGGCAACCTGGGCTTCAAG
ACGACCGAGGACGACCTCCGGAGACAGTTCGAGAAGTGCGGCGAGATGGAATGGGTGAAGCTGGCGACGTTTGAG
GACACGGGCAAGTGCAAGGGCTACGGCTGGGTCAAGTTCCGGGACGCCGAGGCGGCCGCCTGGGCCGTCAAGGGC
TTCGTCAAGATCCGTGAGAAGGTCGAGACCGAGGACGACTTCGCCGCCGACGACGATGACGCGGCTACCAGCGAT
GCCGAGTCGCCCAGGCAGCAGCAGTTCAGGACGCGCAAGTGGTGGGTCAACCGGCTGCTGGGCAGACAGCTGAAG
CTCGAGCTGGCCGAGGACGACCAGACGCGGTACAAGAAGCGCTTTGGCCGGGCGGCGCCGCGCGAGCCCCGTGCC
GCCGCCGCCCGGCCCACGCAGCCCCCTGACGAGCCCACGGACCTCGTGGTTGCCCGGCTGACGGGCGCCGTGGTG
AAGCACACCGGCAGCAAGGTGACCTTTGACTAG
Transcript >Hirsu2|759
ATGGCGACCAAAAAGGAAAGCCCGGCGCAGGCAGAGATCGCGACCAGCGCGACCGCGACCAAGCGCAAGTCCAGC
ATCCAGGAGATCGAGGTCGACCTATCGGCACCGGAACCGCCGTCGAAGCGAGCCCGCCGCGCGCTCAAGAAGGGG
AAGACCCTAGCGAAGAGGCCGGTCAGCGAGGACGAGGACGAGGACGACGAGGACGAGGTCAACGTCAACGGGGAA
AAGGGGGGCAAGAAGGACAAAGACACGGCCCGGTCGGAGCACGGCATCTGGGTCGGCAACCTGCCCTTCTCCGCC
ACAGCCGCGTCGCTGCGCAAATGGCTCGTTGACCACTCGGGCGAGGCGATCGCGGACGAGTCCATCACGCGCATC
AAGCTGCCGACCGTCAAGGAGCCCGGCCGGGACCGGAGCCGACCGCCGGCGAACAGGGGCTTCGCCTACGTCGAC
TTCGCCGACCTGGGCCCCAAGGTGGCCGCCATCGCCCTGTCCGAGACGGACATGGGCGGCCGCAAGCTCCTCATC
AAGGACGCCGCCTCCTTCGAAGGCCGGCCCAAGAAGGAGAAGGCGCCAGCGGAGGCGGATGGCGTGGCGGACGGC
CGCGCAGCCGGGACCCGGAAACAAGACGCTCCGCCCGCGAGCCGCAAGGTCTTCGTCGGCAACCTGGGCTTCAAG
ACGACCGAGGACGACCTCCGGAGACAGTTCGAGAAGTGCGGCGAGATGGAATGGGTGAAGCTGGCGACGTTTGAG
GACACGGGCAAGTGCAAGGGCTACGGCTGGGTCAAGTTCCGGGACGCCGAGGCGGCCGCCTGGGCCGTCAAGGGC
TTCGTCAAGATCCGTGAGAAGGTCGAGACCGAGGACGACTTCGCCGCCGACGACGATGACGCGGCTACCAGCGAT
GCCGAGTCGCCCAGGCAGCAGCAGTTCAGGACGCGCAAGTGGTGGGTCAACCGGCTGCTGGGCAGACAGCTGAAG
CTCGAGCTGGCCGAGGACGACCAGACGCGGTACAAGAAGCGCTTTGGCCGGGCGGCGCCGCGCGAGCCCCGTGCC
GCCGCCGCCCGGCCCACGCAGCCCCCTGACGAGCCCACGGACCTCGTGGTTGCCCGGCTGACGGGCGCCGTGGTG
AAGCACACCGGCAGCAAGGTGACCTTTGACTAG
Gene >Hirsu2|759
ATGGCGACCAAAAAGGAAAGCCCGGCGCAGGCAGAGATCGCGACCAGCGCGACCGCGACCAAGCGCAAGTCCAGC
ATCCAGGAGATCGAGGTCGACCTATCGGCACCGGAACCGCCGTCGAAGCGAGCCCGCCGCGCGCTCAAGAAGGGG
AAGACCCTAGCGAAGAGGCCGGTCAGCGAGGACGAGGACGAGGACGACGAGGACGAGGTCAACGTCAACGGGGAA
AAGGGGGGCAAGAAGGACAAAGACACGGCCCGGTCGGAGCACGGCATCTGGGTCGGCAACCTGCCCTTCTCCGCC
ACAGCCGCGTCGCTGCGCAAATGGCTCGTTGACCACTCGGGCGAGGCGATCGCGGACGAGTCCATCACGCGCATC
AAGCTGCCGACCGTCAAGGAGCCCGGCCGGGACCGGAGCCGACCGCCGGCGAACAGGGGCTTCGCCTACGTCGAC
TTCGCCGACCTGGGCCCCAAGGTGGCCGCCATCGCCCTGTCCGAGACGGACATGGGCGGCCGCAAGCTCCTCATC
AAGGACGCCGCCTCCTTCGAAGGCCGGCCCAAGAAGGAGAAGGCGCCAGCGGAGGCGGATGGCGTGGCGGACGGC
CGCGCAGCCGGGACCCGGAAACAAGACGCTCCGCCCGCGAGCCGCAAGGTCTTCGTCGGCAACCTGGGCTTCAAG
ACGACCGAGGACGACCTCCGGAGACAGTTCGAGAAGTGCGGCGAGATGGAATGGGTGAAGCTGGCGACGTTTGAG
GACACGGGCAAGTGCAAGGGCTACGGCTGGGTCAAGTTCCGGGACGCCGAGGCGGCCGCCTGGGCCGTCAAGGGC
TTCGTCAAGATCCGTGAGAAGGTCGAGACCGAGGACGACTTCGCCGCCGACGACGATGACGCGGCTACCAGCGAT
GCCGAGTCGCCCAGGCAGCAGCAGTTCAGGACGCGCAAGTGGTGGGTCAACCGGCTGCTGGGCAGACAGCTGAAG
CTCGAGCTGGCCGAGGACGACCAGACGCGGTACAAGAAGCGCTTTGGCCGGGCGGCGCCGCGCGAGCCCCGTGCC
GCCGCCGCCCGGCCCACGCAGCCCCCTGACGAGCCCACGGACCTCGTGGTTGCCCGGCTGACGGGCGCCGTGGTG
AAGCACACCGGCAGCAAGGTGACCTTTGACTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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