© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7588 |
| Gene name | |
| Location | Contig_45:3324..4704 |
| Strand | + |
| Gene length (bp) | 1380 |
| Transcript length (bp) | 1326 |
| Coding sequence length (bp) | 1326 |
| Protein length (aa) | 442 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 9.7E-13 | 28 | 66 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.2E-08 | 29 | 66 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 3.8E-08 | 28 | 70 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 9.6E-08 | 29 | 64 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 5.5E-07 | 28 | 67 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WZJ6|RAD18_ASPFU | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1 | 5 | 348 | 6.0E-105 |
| sp|Q02398|RAD18_EMENI | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1 | 5 | 339 | 9.0E-96 |
| sp|P33288|RAD18_NEUCR | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2 | 5 | 351 | 2.0E-94 |
| sp|O74747|RAD18_SCHPO | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp18 PE=3 SV=1 | 1 | 340 | 1.0E-47 |
| sp|Q6CHI1|RAD18_YARLI | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAD18 PE=3 SV=1 | 5 | 342 | 6.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4WZJ6|RAD18_ASPFU | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1 | 5 | 348 | 6.0E-105 |
| sp|Q02398|RAD18_EMENI | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1 | 5 | 339 | 9.0E-96 |
| sp|P33288|RAD18_NEUCR | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2 | 5 | 351 | 2.0E-94 |
| sp|O74747|RAD18_SCHPO | Postreplication repair E3 ubiquitin-protein ligase rad18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp18 PE=3 SV=1 | 1 | 340 | 1.0E-47 |
| sp|Q6CHI1|RAD18_YARLI | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAD18 PE=3 SV=1 | 5 | 342 | 6.0E-42 |
| sp|Q6BLM3|RAD18_DEBHA | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2 | 2 | 400 | 3.0E-37 |
| sp|Q75EN0|RAD18_ASHGO | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1 | 6 | 343 | 7.0E-33 |
| sp|Q6FPI4|RAD18_CANGA | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1 | 3 | 378 | 7.0E-29 |
| sp|Q9QXK2|RAD18_MOUSE | E3 ubiquitin-protein ligase RAD18 OS=Mus musculus GN=Rad18 PE=1 SV=2 | 17 | 357 | 8.0E-29 |
| sp|Q5A4N5|RAD18_CANAL | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD18 PE=3 SV=1 | 1 | 338 | 4.0E-27 |
| sp|Q9NS91|RAD18_HUMAN | E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1 SV=2 | 17 | 339 | 3.0E-26 |
| sp|Q6CTZ8|RAD18_KLULA | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18 PE=3 SV=1 | 11 | 350 | 2.0E-22 |
| sp|P10862|RAD18_YEAST | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD18 PE=1 SV=1 | 6 | 100 | 3.0E-17 |
| sp|Q6AZZ1|TRI68_HUMAN | E3 ubiquitin-protein ligase TRIM68 OS=Homo sapiens GN=TRIM68 PE=1 SV=1 | 16 | 117 | 4.0E-08 |
| sp|Q03605|YNN1_CAEEL | Uncharacterized RING finger protein T02C1.1 OS=Caenorhabditis elegans GN=T02C1.1 PE=3 SV=1 | 29 | 68 | 9.0E-08 |
| sp|Q8K243|TRI68_MOUSE | E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus GN=Trim68 PE=2 SV=1 | 16 | 86 | 2.0E-07 |
| sp|Q9D4H7|LONF3_MOUSE | LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1 | 13 | 88 | 3.0E-07 |
| sp|P10862|RAD18_YEAST | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD18 PE=1 SV=1 | 200 | 344 | 4.0E-07 |
| sp|Q12899|TRI26_HUMAN | Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26 PE=1 SV=1 | 20 | 94 | 5.0E-07 |
| sp|Q7YR34|TRI26_PANTR | Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26 PE=3 SV=1 | 20 | 94 | 5.0E-07 |
| sp|Q99PN3|TRI26_MOUSE | Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26 PE=2 SV=3 | 20 | 94 | 5.0E-07 |
| sp|P62603|TRI26_RAT | Tripartite motif-containing protein 26 OS=Rattus norvegicus GN=Trim26 PE=3 SV=1 | 20 | 94 | 6.0E-07 |
| sp|Q8HXH0|LONF3_MACFA | LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis GN=LONRF3 PE=2 SV=1 | 13 | 67 | 8.0E-07 |
| sp|Q9C037|TRIM4_HUMAN | E3 ubiquitin-protein ligase TRIM4 OS=Homo sapiens GN=TRIM4 PE=1 SV=2 | 23 | 92 | 8.0E-07 |
| sp|Q496Y0|LONF3_HUMAN | LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1 | 13 | 67 | 8.0E-07 |
| sp|Q8RXD4|BRCA1_ARATH | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=1 SV=1 | 27 | 231 | 9.0E-07 |
| sp|O77666|TRI26_PIG | Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3 SV=2 | 20 | 94 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7588 MTVDDVPDSTDWLSTPLSGLAAVEAALRCQVCKDFFKTPMITSCSHTFCSLCIRRALSSDGKCPLCRAPEQELKL RSNWSIEDAVETFARARTDMLALARNRFAESTSQKRKVDVEESPEPQPKRLRASTRLSKARASTAAQLRDDVVEN SDEDEDYVPDDPDGLVPCPACQTKMKAWRVFQHLETCPGPSPRRQANRRDENTAGEDSTAYTSGQVLRRQDKSLE RLPALNYSMLKEQTLRKKMTELGISNQGPRQLLEKRHKEWLTLWNANCDAAHPKKRIGLLHDLEVWERTQGGRAP TTGKAIQAAAAVRDKDFDAAAWAVKHDSSFKDLIAAARKSKLETKIRTGERGGGAALGQQTVMGAEAARVTHTSS LLSPAECHDSTRSSVNLGKPIQPDPDAASQPGTPPDGSSNPTALIAKSPDDPRSSQPTLGAQDAIS* |
| Coding | >Hirsu2|7588 ATGACCGTGGACGATGTTCCAGACTCGACAGACTGGCTCTCGACGCCACTGTCCGGCCTCGCTGCCGTTGAGGCG GCCTTGCGCTGCCAGGTCTGCAAGGATTTCTTCAAAACTCCGATGATAACATCGTGCTCACACACATTCTGCTCC CTGTGCATCCGGAGAGCACTATCCTCCGATGGAAAGTGCCCTCTCTGCCGAGCACCGGAGCAAGAGCTGAAATTA CGAAGTAACTGGTCAATCGAGGACGCGGTGGAAACATTCGCCAGAGCACGAACAGACATGTTAGCCCTAGCCAGG AACAGGTTCGCGGAGAGCACCTCTCAAAAGAGAAAAGTCGATGTTGAAGAGTCGCCCGAGCCACAACCGAAACGT TTACGTGCTTCAACACGGCTTAGCAAGGCCCGCGCCTCCACGGCAGCCCAGCTACGAGACGACGTTGTGGAGAAC TCAGATGAAGATGAGGACTACGTCCCAGATGACCCCGATGGCCTTGTCCCTTGCCCGGCTTGTCAGACGAAAATG AAGGCATGGAGAGTGTTCCAGCATCTCGAAACATGTCCGGGTCCATCGCCTCGACGGCAAGCGAACAGAAGAGAT GAAAATACAGCGGGAGAAGACAGTACCGCATATACTTCGGGTCAAGTTCTACGACGTCAAGATAAATCGCTCGAG CGCCTACCAGCCCTAAATTATTCTATGCTCAAGGAGCAAACTCTGCGGAAGAAAATGACTGAACTTGGAATCTCC AACCAAGGACCGCGGCAGTTGCTAGAAAAGCGCCACAAAGAGTGGTTAACCTTGTGGAATGCCAACTGTGATGCT GCACATCCAAAGAAGCGTATTGGCCTCCTCCACGATCTAGAAGTCTGGGAACGGACACAGGGCGGCCGGGCGCCG ACCACGGGCAAAGCCATCCAGGCTGCCGCGGCTGTCAGAGACAAGGATTTTGACGCCGCGGCCTGGGCTGTCAAG CACGATTCTTCGTTCAAAGACTTGATTGCCGCGGCGAGGAAAAGCAAGTTGGAGACCAAGATAAGAACTGGCGAG AGAGGTGGTGGGGCTGCTCTCGGGCAACAGACAGTAATGGGTGCAGAAGCTGCTCGAGTTACACATACCTCGAGC TTGCTTTCTCCCGCAGAATGTCACGACAGTACGCGAAGCAGCGTTAACTTGGGGAAGCCAATACAGCCGGATCCG GACGCTGCCAGTCAGCCGGGAACGCCGCCCGATGGCTCATCTAACCCGACGGCACTTATCGCAAAATCGCCTGAC GATCCACGGTCCAGCCAGCCTACGCTGGGCGCCCAGGATGCTATAAGCTAG |
| Transcript | >Hirsu2|7588 ATGACCGTGGACGATGTTCCAGACTCGACAGACTGGCTCTCGACGCCACTGTCCGGCCTCGCTGCCGTTGAGGCG GCCTTGCGCTGCCAGGTCTGCAAGGATTTCTTCAAAACTCCGATGATAACATCGTGCTCACACACATTCTGCTCC CTGTGCATCCGGAGAGCACTATCCTCCGATGGAAAGTGCCCTCTCTGCCGAGCACCGGAGCAAGAGCTGAAATTA CGAAGTAACTGGTCAATCGAGGACGCGGTGGAAACATTCGCCAGAGCACGAACAGACATGTTAGCCCTAGCCAGG AACAGGTTCGCGGAGAGCACCTCTCAAAAGAGAAAAGTCGATGTTGAAGAGTCGCCCGAGCCACAACCGAAACGT TTACGTGCTTCAACACGGCTTAGCAAGGCCCGCGCCTCCACGGCAGCCCAGCTACGAGACGACGTTGTGGAGAAC TCAGATGAAGATGAGGACTACGTCCCAGATGACCCCGATGGCCTTGTCCCTTGCCCGGCTTGTCAGACGAAAATG AAGGCATGGAGAGTGTTCCAGCATCTCGAAACATGTCCGGGTCCATCGCCTCGACGGCAAGCGAACAGAAGAGAT GAAAATACAGCGGGAGAAGACAGTACCGCATATACTTCGGGTCAAGTTCTACGACGTCAAGATAAATCGCTCGAG CGCCTACCAGCCCTAAATTATTCTATGCTCAAGGAGCAAACTCTGCGGAAGAAAATGACTGAACTTGGAATCTCC AACCAAGGACCGCGGCAGTTGCTAGAAAAGCGCCACAAAGAGTGGTTAACCTTGTGGAATGCCAACTGTGATGCT GCACATCCAAAGAAGCGTATTGGCCTCCTCCACGATCTAGAAGTCTGGGAACGGACACAGGGCGGCCGGGCGCCG ACCACGGGCAAAGCCATCCAGGCTGCCGCGGCTGTCAGAGACAAGGATTTTGACGCCGCGGCCTGGGCTGTCAAG CACGATTCTTCGTTCAAAGACTTGATTGCCGCGGCGAGGAAAAGCAAGTTGGAGACCAAGATAAGAACTGGCGAG AGAGGTGGTGGGGCTGCTCTCGGGCAACAGACAGTAATGGGTGCAGAAGCTGCTCGAGTTACACATACCTCGAGC TTGCTTTCTCCCGCAGAATGTCACGACAGTACGCGAAGCAGCGTTAACTTGGGGAAGCCAATACAGCCGGATCCG GACGCTGCCAGTCAGCCGGGAACGCCGCCCGATGGCTCATCTAACCCGACGGCACTTATCGCAAAATCGCCTGAC GATCCACGGTCCAGCCAGCCTACGCTGGGCGCCCAGGATGCTATAAGCTAG |
| Gene | >Hirsu2|7588 ATGACCGTGGACGATGTTCCAGACTCGACAGACTGGCTCTCGACGCCACTGTCCGGCCTCGCTGCCGTTGAGGCG GCCTTGCGCTGCCAGGTCTGCAAGGATTTCTTCAAAACTCCGATGATAACATCGTGCTCACACACATTCTGCTCC CTGTGCATCCGGAGAGCACTATCCTCCGATGGAAAGTGCCCTCTCTGCCGAGCACCGGAGCAAGAGCTGAAATTA CGAAGTAACTGGTCAATCGAGGACGCGGTGGAAACATTCGCCAGAGCACGAACAGACATGTTAGCCCTAGCCAGG AACAGGTTCGCGGAGAGCACCTCTCAAAAGAGAAAAGTCGATGTTGAAGAGTCGCCCGAGCCACAACCGAAACGT TTACGTGCTTCAACACGGCTTAGCAAGGCCCGCGCCTCCACGGCAGCCCAGCTACGAGACGACGTTGTGGAGAAC TCAGATGAAGATGAGGACTACGTCCCAGATGACCGCAAGTCGCGCACCTTCCCCCTTCTCGACTGTCTAAGCTAA TAAGTCACCGCAGCCGATGGCCTTGTCCCTTGCCCGGCTTGTCAGACGAAAATGAAGGCATGGAGAGTGTTCCAG CATCTCGAAACATGTCCGGGTCCATCGCCTCGACGGCAAGCGAACAGAAGAGATGAAAATACAGCGGGAGAAGAC AGTACCGCATATACTTCGGGTCAAGTTCTACGACGTCAAGATAAATCGCTCGAGCGCCTACCAGCCCTAAATTAT TCTATGCTCAAGGAGCAAACTCTGCGGAAGAAAATGACTGAACTTGGAATCTCCAACCAAGGACCGCGGCAGTTG CTAGAAAAGCGCCACAAAGAGTGGTTAACCTTGTGGAATGCCAACTGTGATGCTGCACATCCAAAGAAGCGTATT GGCCTCCTCCACGATCTAGAAGTCTGGGAACGGACACAGGGCGGCCGGGCGCCGACCACGGGCAAAGCCATCCAG GCTGCCGCGGCTGTCAGAGACAAGGATTTTGACGCCGCGGCCTGGGCTGTCAAGCACGATTCTTCGTTCAAAGAC TTGATTGCCGCGGCGAGGAAAAGCAAGTTGGAGACCAAGATAAGAACTGGCGAGAGAGGTGGTGGGGCTGCTCTC GGGCAACAGACAGTAATGGGTGCAGAAGCTGCTCGAGTTACACATACCTCGAGCTTGCTTTCTCCCGCAGAATGT CACGACAGTACGCGAAGCAGCGTTAACTTGGGGAAGCCAATACAGCCGGATCCGGACGCTGCCAGTCAGCCGGGA ACGCCGCCCGATGGCTCATCTAACCCGACGGCACTTATCGCAAAATCGCCTGACGATCCACGGTCCAGCCAGCCT ACGCTGGGCGCCCAGGATGCTATAAGCTAG |