Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7543
Gene name
LocationContig_444:13469..14386
Strand-
Gene length (bp)917
Transcript length (bp)708
Coding sequence length (bp)708
Protein length (aa) 236

Overview

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 54 229 1.0E-23
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 14 229 9.0E-23
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 32 233 1.0E-22
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 17 229 1.0E-21
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 233 2.0E-21
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 54 229 1.0E-23
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 14 229 9.0E-23
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 32 233 1.0E-22
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 17 229 1.0E-21
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 233 2.0E-21
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 62 233 2.0E-21
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 229 6.0E-21
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 229 1.0E-20
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 229 3.0E-20
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 229 3.0E-19
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 32 233 2.0E-18
sp|A1X159|FP1V2_PERVI Foot protein 1 variant 2 OS=Perna viridis GN=fp-1 PE=1 SV=1 17 219 1.0E-16
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) GN=rep PE=3 SV=1 33 228 3.0E-15
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) GN=1a PE=1 SV=1 33 228 3.0E-15
sp|A1X158|FP1V1_PERVI Foot protein 1 variant 1 OS=Perna viridis GN=fp-1 PE=1 SV=1 71 209 3.0E-14
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) GN=1a PE=3 SV=1 33 203 2.0E-11
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) GN=rep PE=3 SV=1 33 203 2.0E-11
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) GN=1a PE=3 SV=1 87 226 4.0E-11
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) GN=rep PE=3 SV=1 87 226 4.0E-11
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) GN=1a PE=3 SV=1 84 229 9.0E-11
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) GN=rep PE=3 SV=1 84 229 1.0E-10
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) GN=1a PE=3 SV=1 87 213 7.0E-09
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) GN=rep PE=3 SV=1 87 213 7.0E-09
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) GN=1a PE=3 SV=1 84 203 1.0E-08
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) GN=rep PE=3 SV=1 84 203 1.0E-08
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) GN=1a PE=3 SV=1 77 193 2.0E-08
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) GN=rep PE=3 SV=1 77 193 2.0E-08
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) GN=1a PE=3 SV=1 33 183 2.0E-06
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) GN=rep PE=3 SV=1 33 183 2.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0712 0.0563 0.9586 0.0812 0.0523 0.0073 0.091 0.1226 0.1062 0.0013

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.999709

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7678
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|7543 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7543
MQATATLVLAFAGVVAAAPRPGRNDCGTPYGRCYNAVETPEAAVVARATQSVATSMLPPKPTSLVGDDGWMTLWK
QDDDKMTALKSDDGVKTAWKDDDGVMTAWKRAEDGVMTAWKGDDGVMTAWKDDDGVMTAWKQDDGVMTAWNDDDG
VMTAWKEDDGVMTAWKRADDGDDGVMTALKEDDGVMTALKEDDGVMTAWKQDDGVMTAWKSDDGVMTAWKSDDGV
MTAWAPQPTQ*
Coding >Hirsu2|7543
ATGCAGGCCACTGCCACGCTTGTCTTGGCCTTCGCCGGCGTCGTCGCCGCCGCGCCCCGGCCCGGCCGCAACGAC
TGCGGAACGCCCTATGGAAGGTGCTACAACGCCGTCGAGACTCCCGAGGCTGCCGTCGTCGCCCGCGCGACCCAG
TCCGTCGCCACCTCGATGCTGCCTCCTAAGCCCACCAGCCTGGTGGGAGACGACGGCTGGATGACGCTGTGGAAG
CAGGACGACGACAAGATGACAGCCCTGAAGTCGGACGATGGAGTCAAGACTGCCTGGAAGGACGACGACGGTGTC
ATGACGGCCTGGAAGAGGGCCGAAGATGGCGTCATGACTGCCTGGAAGGGCGACGACGGTGTCATGACGGCCTGG
AAGGACGACGACGGTGTCATGACGGCCTGGAAGCAAGACGACGGTGTCATGACTGCCTGGAACGACGACGACGGT
GTCATGACAGCCTGGAAGGAGGACGATGGTGTCATGACCGCCTGGAAGAGGGCCGACGACGGTGACGACGGCGTC
ATGACTGCCTTGAAGGAGGACGACGGTGTCATGACTGCCTTGAAGGAGGACGACGGCGTCATGACGGCCTGGAAG
CAGGACGACGGTGTCATGACCGCCTGGAAGAGCGACGACGGTGTCATGACCGCCTGGAAGAGCGACGACGGCGTC
ATGACCGCCTGGGCTCCCCAGCCGACCCAGTGA
Transcript >Hirsu2|7543
ATGCAGGCCACTGCCACGCTTGTCTTGGCCTTCGCCGGCGTCGTCGCCGCCGCGCCCCGGCCCGGCCGCAACGAC
TGCGGAACGCCCTATGGAAGGTGCTACAACGCCGTCGAGACTCCCGAGGCTGCCGTCGTCGCCCGCGCGACCCAG
TCCGTCGCCACCTCGATGCTGCCTCCTAAGCCCACCAGCCTGGTGGGAGACGACGGCTGGATGACGCTGTGGAAG
CAGGACGACGACAAGATGACAGCCCTGAAGTCGGACGATGGAGTCAAGACTGCCTGGAAGGACGACGACGGTGTC
ATGACGGCCTGGAAGAGGGCCGAAGATGGCGTCATGACTGCCTGGAAGGGCGACGACGGTGTCATGACGGCCTGG
AAGGACGACGACGGTGTCATGACGGCCTGGAAGCAAGACGACGGTGTCATGACTGCCTGGAACGACGACGACGGT
GTCATGACAGCCTGGAAGGAGGACGATGGTGTCATGACCGCCTGGAAGAGGGCCGACGACGGTGACGACGGCGTC
ATGACTGCCTTGAAGGAGGACGACGGTGTCATGACTGCCTTGAAGGAGGACGACGGCGTCATGACGGCCTGGAAG
CAGGACGACGGTGTCATGACCGCCTGGAAGAGCGACGACGGTGTCATGACCGCCTGGAAGAGCGACGACGGCGTC
ATGACCGCCTGGGCTCCCCAGCCGACCCAGTGA
Gene >Hirsu2|7543
ATGCAGGCCACTGCCACGCTTGTCTTGGCCTTCGCCGGCGTCGTCGCCGCCGCGCCCCGGCCCGGCCGCAACGAC
TGCGGAACGCCCTATGGAAGGTGAGAGGAGCCGCCCGGCTGGCCCGTCTGGCCTGTATCGCATGCTCACGCTTGC
CGCCTTCAGGTGCTACAACGCCGTCGAGACTCCCGAGGCTGCCGTCGTCGCCCGCGCGACCCAGTCCGTCGCCAC
CTCGATGCTGCCTCCTAAGCCCACCAGCCTGGTGGGAGACGACGGCTGGATGACGCTGTGGAAGCAGGACGACGA
CAAGATGACAGCCCTGAAGTCGGACGATGGAGTCAAGACTGCCTGGAAGGACGACGACGGTGTCATGACGGCCTG
GAAGAGGGCCGAAGATGGCGTCATGACTGCCTGGAAGGGCGACGACGGTGTCATGACGGCCTGGAAGGACGACGA
CGGTGTCATGACGGCCTGGAAGCAAGACGACGGTGTCATGACTGCCTGGAACGACGACGACGGTGTCATGACAGC
CTGGAAGGAGGACGATGGTGTCATGACCGCCTGGAAGAGGGCCGACGACGGTGTCATGACGGCCTGGAAGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCTGGAAGCAGGACGACGGCGTCATGACTGCCTTGAAGG
AGGACGACGGTGTCATGACTGCCTTGAAGGAGGACGACGGCGTCATGACGGCCTGGAAGCAGGACGACGGTGTCA
TGACCGCCTGGAAGAGCGACGACGGTGTCATGACCGCCTGGAAGAGCGACGACGGCGTCATGACCGCCTGGGCTC
CCCAGCCGACCCAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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