Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7526
Gene name
LocationContig_442:7537..9313
Strand-
Gene length (bp)1776
Transcript length (bp)1569
Coding sequence length (bp)1569
Protein length (aa) 523

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02582 DUF155 Uncharacterised ACR, YagE family COG1723 1.9E-53 297 468

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 95 516 4.0E-128
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 48 521 5.0E-117
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 296 515 1.0E-44
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 92 482 5.0E-41
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 297 507 2.0E-23
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 95 516 4.0E-128
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 48 521 5.0E-117
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 296 515 1.0E-44
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 92 482 5.0E-41
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 297 507 2.0E-23
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 297 507 5.0E-23
sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 297 507 2.0E-22
sp|Q05648|MRX10_YEAST MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 303 506 2.0E-19
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 30 0.45

Transmembrane Domains

Domain # Start End Length
1 496 515 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7526
MEARGSQDENAPLLANQPASPDSRPKNARTVTFSADPVTRTIEPEPMLIHSGQNAPVAAGNAVQPPALAALNNKL
RRRYSHGAAPAAVPAPAGAKIGPQRSTKKTEKLKLLPNPDFEDGEDEESGRDVYSQYTRIKDPTARRDAARLGKS
DRSRLPRVTAYSTANKYDMEGLMRFLKGRGKTRGANPKLIDECIYTPYAYGKPGDPRLRPVRRRSRRHSTGGETF
DAESRRQLARDDLRDSSTHDSGYGDDFPADDVHPDADVGGDGLLEPEGLDDMPVAESETAPDFDTQVHTPEVFLF
DYGVVVVWGMQEAQEARFLRDIAKFEIEKLSPDDVETEHFNFYYTREYQARIYNDFITLRDKHNYMTKLAISHAL
AQSVKTSLFEELIASTIDTCKDIPTQIALTGKINLSRSQINMQIGELFILRINIHLNGSVLDTPELFWVEPQLEP
VYQAVRSYLEMDQRVELLTERLDVIADLLAVLKDQLSHGHDEKLEWIVIVLIAMEILVAAVNIVVDIYAGEA*
Coding >Hirsu2|7526
ATGGAGGCTCGGGGAAGCCAGGACGAGAACGCGCCTCTCCTGGCGAACCAGCCCGCGTCGCCCGACAGCCGGCCC
AAGAACGCGCGCACCGTCACCTTCAGCGCCGACCCCGTCACCAGGACCATCGAGCCCGAGCCGATGCTCATTCAT
TCCGGCCAAAACGCCCCAGTCGCCGCCGGCAATGCCGTCCAGCCCCCCGCGCTCGCCGCCCTGAACAACAAGCTC
CGCCGGCGATACAGCCACGGCGCCGCCCCGGCCGCCGTCCCTGCTCCCGCCGGTGCCAAGATTGGGCCTCAGAGG
AGCACGAAGAAGACGGAGAAGCTCAAGCTTCTGCCCAACCCCGACTTCGAGGACGGCGAGGACGAGGAGAGCGGC
CGAGACGTCTACTCGCAGTACACCCGCATCAAGGACCCGACCGCCAGGAGAGATGCGGCCCGGCTGGGGAAGAGC
GACCGCAGCCGGCTCCCTCGCGTGACGGCCTACTCGACCGCCAACAAGTATGACATGGAGGGCCTCATGCGCTTC
CTCAAGGGCCGCGGCAAGACCCGCGGCGCCAACCCCAAGCTCATCGACGAGTGCATATACACCCCCTACGCCTAC
GGCAAGCCCGGCGACCCGCGTCTCCGTCCGGTGCGCCGACGCAGCCGTCGTCACTCGACCGGCGGCGAGACCTTT
GACGCCGAGTCGCGCCGCCAGCTGGCCCGCGACGACCTGCGCGACTCGTCGACGCACGACTCGGGATACGGAGAC
GACTTCCCGGCCGACGACGTCCACCCGGATGCCGACGTCGGCGGCGACGGGCTGCTCGAACCCGAAGGCTTGGAC
GACATGCCCGTCGCCGAGTCGGAGACCGCGCCCGACTTTGACACCCAGGTGCACACGCCCGAGGTCTTCCTCTTC
GACTACGGCGTCGTCGTCGTCTGGGGCATGCAGGAGGCTCAGGAGGCTCGCTTCCTCCGCGACATTGCCAAGTTC
GAGATCGAAAAGCTCTCGCCCGACGACGTCGAGACGGAACACTTCAACTTCTACTACACCCGCGAGTACCAGGCG
CGCATCTACAACGACTTCATCACGCTGCGCGACAAGCACAACTACATGACCAAGCTGGCCATCTCGCATGCTCTC
GCGCAGAGCGTCAAGACGTCCCTGTTCGAGGAACTCATCGCCTCCACCATTGATACGTGCAAAGACATCCCGACA
CAGATTGCCCTGACGGGCAAGATCAACCTGAGCCGGTCCCAGATCAACATGCAGATCGGCGAGCTCTTCATCCTC
CGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACGCCCGAGCTCTTCTGGGTCGAACCCCAGCTGGAGCCC
GTCTACCAGGCCGTGCGGAGCTACCTGGAGATGGACCAGCGCGTCGAGCTCCTGACGGAGCGCCTGGATGTCATC
GCCGACTTACTGGCCGTTCTCAAGGACCAGCTGAGCCACGGCCACGACGAGAAGCTCGAGTGGATCGTGATCGTG
CTGATTGCCATGGAAATCCTCGTCGCGGCCGTGAACATCGTGGTGGACATCTACGCCGGCGAAGCATGA
Transcript >Hirsu2|7526
ATGGAGGCTCGGGGAAGCCAGGACGAGAACGCGCCTCTCCTGGCGAACCAGCCCGCGTCGCCCGACAGCCGGCCC
AAGAACGCGCGCACCGTCACCTTCAGCGCCGACCCCGTCACCAGGACCATCGAGCCCGAGCCGATGCTCATTCAT
TCCGGCCAAAACGCCCCAGTCGCCGCCGGCAATGCCGTCCAGCCCCCCGCGCTCGCCGCCCTGAACAACAAGCTC
CGCCGGCGATACAGCCACGGCGCCGCCCCGGCCGCCGTCCCTGCTCCCGCCGGTGCCAAGATTGGGCCTCAGAGG
AGCACGAAGAAGACGGAGAAGCTCAAGCTTCTGCCCAACCCCGACTTCGAGGACGGCGAGGACGAGGAGAGCGGC
CGAGACGTCTACTCGCAGTACACCCGCATCAAGGACCCGACCGCCAGGAGAGATGCGGCCCGGCTGGGGAAGAGC
GACCGCAGCCGGCTCCCTCGCGTGACGGCCTACTCGACCGCCAACAAGTATGACATGGAGGGCCTCATGCGCTTC
CTCAAGGGCCGCGGCAAGACCCGCGGCGCCAACCCCAAGCTCATCGACGAGTGCATATACACCCCCTACGCCTAC
GGCAAGCCCGGCGACCCGCGTCTCCGTCCGGTGCGCCGACGCAGCCGTCGTCACTCGACCGGCGGCGAGACCTTT
GACGCCGAGTCGCGCCGCCAGCTGGCCCGCGACGACCTGCGCGACTCGTCGACGCACGACTCGGGATACGGAGAC
GACTTCCCGGCCGACGACGTCCACCCGGATGCCGACGTCGGCGGCGACGGGCTGCTCGAACCCGAAGGCTTGGAC
GACATGCCCGTCGCCGAGTCGGAGACCGCGCCCGACTTTGACACCCAGGTGCACACGCCCGAGGTCTTCCTCTTC
GACTACGGCGTCGTCGTCGTCTGGGGCATGCAGGAGGCTCAGGAGGCTCGCTTCCTCCGCGACATTGCCAAGTTC
GAGATCGAAAAGCTCTCGCCCGACGACGTCGAGACGGAACACTTCAACTTCTACTACACCCGCGAGTACCAGGCG
CGCATCTACAACGACTTCATCACGCTGCGCGACAAGCACAACTACATGACCAAGCTGGCCATCTCGCATGCTCTC
GCGCAGAGCGTCAAGACGTCCCTGTTCGAGGAACTCATCGCCTCCACCATTGATACGTGCAAAGACATCCCGACA
CAGATTGCCCTGACGGGCAAGATCAACCTGAGCCGGTCCCAGATCAACATGCAGATCGGCGAGCTCTTCATCCTC
CGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACGCCCGAGCTCTTCTGGGTCGAACCCCAGCTGGAGCCC
GTCTACCAGGCCGTGCGGAGCTACCTGGAGATGGACCAGCGCGTCGAGCTCCTGACGGAGCGCCTGGATGTCATC
GCCGACTTACTGGCCGTTCTCAAGGACCAGCTGAGCCACGGCCACGACGAGAAGCTCGAGTGGATCGTGATCGTG
CTGATTGCCATGGAAATCCTCGTCGCGGCCGTGAACATCGTGGTGGACATCTACGCCGGCGAAGCATGA
Gene >Hirsu2|7526
ATGGAGGCTCGGGGAAGCCAGGACGAGAACGCGCCTCTCCTGGCGAACCAGCCCGCGTCGCCCGACAGCCGGCCC
AAGAACGCGCGCACCGTCACCTTCAGCGCCGACCCCGTCACCAGGACCATCGAGCCCGAGCCGATGCTCATTCAT
TCCGGCCAAAACGCCCCAGTCGCCGCCGGCAATGCCGTCCAGCCCCCCGCGCTCGCCGCCCTGAACAACAAGCTC
CGCCGGCGATACAGCCACGGCGCCGCCCCGGCCGCCGTCCCTGCTCCCGCCGGTGCCAAGATTGGGCCTCAGAGG
AGCACGAAGAAGACGGAGAAGCTCAAGCTTCTGCCCAACCCCGACTTCGAGGACGGCGAGGACGAGGAGAGCGGC
CGAGACGTCTACTCGCAGTACACCCGCATCAAGGACCCGACCGCCAGGAGAGATGCGGCCCGGCTGGGGAAGAGC
GACCGCAGCCGGCTCCCTCGCGTGACGGCCTACTCGACCGCCAACAAGTATGACATGGAGGGCCTCATGCGCTTC
CTCAAGGGCCGCGGCAAGACCCGCGGCGCCAACCCCAAGCTCATCGACGAGTGCATATACACCCCCTACGCCTAC
GGCAAGCCCGGCGACCCGCGTCTCCGTCCGGTGCGCCGACGCAGCCGTCGTCACTCGACCGGCGGCGAGACCTTT
GACGCCGAGTCGCGCCGCCAGCTGGCCCGCGACGACCTGCGCGACTCGTCGACGCACGACTCGGGATACGGAGAC
GACTTCCCGGCCGACGACGTCCACCCGGATGCCGACGTCGGCGGCGACGGGCTGCTCGAACCCGAAGGCTTGGAC
GACATGCCCGTCGCCGAGTCGGAGACCGCGCCCGACTTTGACACCCAGGTGCACACGCCCGAGGTCTTCCTCTTC
GACTACGGCGTCGTCGTCGTCTGGGGCATGCAGGAGGCTCAGGAGGCTCGCTTCCTCCGCGACATTGCCAAGTTC
GAGATCGAAAAGCTCTCGCCCGACGACGTCGAGACGGAACACTTCAACTTCTACTACACCCGCGAGTACCAGGCG
CGCATCTACAACGACTTCATCACGCTGCGCGACAAGCACAACTACATGACCAAGCTGGCCATCTCGCATGCTCTC
GCGCAGAGCGTCAAGGTACGTTTGGCTTGCTCTCCCCCCCTCCCCGCCGGCATTTGCCCACCCGGCTGGTCTCTA
TCTCTCGCCCGAGGCACATGGTGACCGAAGCCCGGCGGACAGACGTCCCTGTTCGAGGAACTCATCGCCTCCACC
ATTGATACGTGCAAAGACATCCCGACACAGATTGCCCTGACGGGCAAGATCAACCTGAGCCGGTCCCAGATCAAC
ATGCAGATCGGCGAGCTCTTCATCCTCCGCATCAACATCCACCTCAACGGCTCCGTCCTCGACACGCCCGAGCTC
TTCTGGGTCGAACCCCAGCTGGAGCCCGTCTACCAGGCCGTGCGGAGCTACCTGGAGATGGACCAGCGCGTCGAG
CTCCTGACGGAGCGCCTGGATGTCATCGCCGACTTACTGGCCGTTCTCAAGGACCAGCTGAGCCACGGCCACGAC
GAGAAGCTCGAGTGGATCGGTGAGCCCCCCCCATCTTTTTCCTCTTCCCGCACCCTGGCGTTTCCGACCGGGTGG
CGAGCCGGCGCTGACGGTGTGGCCTTGTCCATTACCACGTATCCTGCAGTGATCGTGCTGATTGCCATGGAAATC
CTCGTCGCGGCCGTGAACATCGTGGTGGACATCTACGCCGGCGAAGCATGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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