© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|7477 |
| Gene name | |
| Location | Contig_437:11690..12044 |
| Strand | - |
| Gene length (bp) | 354 |
| Transcript length (bp) | 354 |
| Coding sequence length (bp) | 354 |
| Protein length (aa) | 118 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1157 | 0.0515 | 0.9636 | 0.0447 | 0.0812 | 0.0188 | 0.1229 | 0.1256 | 0.1093 | 0.003 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999773 |
| Orthofinder run ID | 4 |
| Orthogroup | 7112 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis 1348a (Ghana) | OphauG2|2032 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|1935 |
| Ophiocordyceps subramaniannii | Hirsu2|7477 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7477 MYGLKVLALAFAAVAVSAAPTEEFKQKKHLKLCPDTWKWVQKNCLRSTKLKCCVRDVFDYMALSIDGVLLDITRA CKSHERETIFEPRARAKHLMAGTDIPKAVASPFMLSSAAAKR* |
| Coding | >Hirsu2|7477 ATGTACGGCCTGAAGGTTCTCGCCTTGGCTTTTGCCGCCGTTGCCGTCTCGGCCGCCCCCACGGAAGAGTTCAAA CAGAAAAAACACCTCAAGTTGTGCCCCGACACCTGGAAATGGGTACAGAAGAACTGCTTGAGGAGCACGAAACTG AAGTGCTGCGTCAGGGACGTCTTCGACTACATGGCACTAAGTATCGATGGCGTCCTTCTCGACATAACGCGGGCC TGTAAGTCACATGAACGAGAAACGATATTCGAGCCCAGGGCCAGAGCTAAGCACCTCATGGCAGGCACCGACATC CCCAAAGCGGTAGCGTCCCCGTTCATGTTGTCTTCGGCCGCGGCCAAGCGATGA |
| Transcript | >Hirsu2|7477 ATGTACGGCCTGAAGGTTCTCGCCTTGGCTTTTGCCGCCGTTGCCGTCTCGGCCGCCCCCACGGAAGAGTTCAAA CAGAAAAAACACCTCAAGTTGTGCCCCGACACCTGGAAATGGGTACAGAAGAACTGCTTGAGGAGCACGAAACTG AAGTGCTGCGTCAGGGACGTCTTCGACTACATGGCACTAAGTATCGATGGCGTCCTTCTCGACATAACGCGGGCC TGTAAGTCACATGAACGAGAAACGATATTCGAGCCCAGGGCCAGAGCTAAGCACCTCATGGCAGGCACCGACATC CCCAAAGCGGTAGCGTCCCCGTTCATGTTGTCTTCGGCCGCGGCCAAGCGATGA |
| Gene | >Hirsu2|7477 ATGTACGGCCTGAAGGTTCTCGCCTTGGCTTTTGCCGCCGTTGCCGTCTCGGCCGCCCCCACGGAAGAGTTCAAA CAGAAAAAACACCTCAAGTTGTGCCCCGACACCTGGAAATGGGTACAGAAGAACTGCTTGAGGAGCACGAAACTG AAGTGCTGCGTCAGGGACGTCTTCGACTACATGGCACTAAGTATCGATGGCGTCCTTCTCGACATAACGCGGGCC TGTAAGTCACATGAACGAGAAACGATATTCGAGCCCAGGGCCAGAGCTAAGCACCTCATGGCAGGCACCGACATC CCCAAAGCGGTAGCGTCCCCGTTCATGTTGTCTTCGGCCGCGGCCAAGCGATGA |