Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7470
Gene name
LocationContig_436:5909..6337
Strand+
Gene length (bp)428
Transcript length (bp)336
Coding sequence length (bp)336
Protein length (aa) 112

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53389|HOL1_YEAST Protein HOL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOL1 PE=1 SV=1 8 105 5.0E-10
sp|O94343|YHMA_SCHPO Uncharacterized MFS-type transporter C1271.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.10c PE=1 SV=1 2 106 2.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 35 57 22
3 70 92 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7470
MHWIFPCIGSAMTSFGFGAISDIVLTVVIDSYPDIIAQAFVVIAFFRNVLSMAGVFGLTPWRKHMGAKTMFIIVA
CVSFAVTFMALPLAIWGKKARIATADRYRRFAKPTS*
Coding >Hirsu2|7470
ATGCACTGGATCTTCCCTTGCATCGGAAGTGCCATGACATCCTTTGGGTTCGGTGCCATTAGCGACATCGTTCTC
ACCGTCGTCATTGACTCGTATCCCGATATCATCGCCCAAGCCTTCGTCGTCATTGCCTTTTTCCGCAACGTCCTC
AGCATGGCCGGCGTCTTCGGCCTGACGCCTTGGCGCAAGCACATGGGCGCCAAAACCATGTTCATCATCGTGGCG
TGCGTGAGTTTTGCCGTCACCTTCATGGCGTTGCCCCTTGCCATCTGGGGCAAGAAGGCCAGGATTGCCACGGCG
GATCGATATCGTCGATTCGCCAAGCCGACCAGTTGA
Transcript >Hirsu2|7470
ATGCACTGGATCTTCCCTTGCATCGGAAGTGCCATGACATCCTTTGGGTTCGGTGCCATTAGCGACATCGTTCTC
ACCGTCGTCATTGACTCGTATCCCGATATCATCGCCCAAGCCTTCGTCGTCATTGCCTTTTTCCGCAACGTCCTC
AGCATGGCCGGCGTCTTCGGCCTGACGCCTTGGCGCAAGCACATGGGCGCCAAAACCATGTTCATCATCGTGGCG
TGCGTGAGTTTTGCCGTCACCTTCATGGCGTTGCCCCTTGCCATCTGGGGCAAGAAGGCCAGGATTGCCACGGCG
GATCGATATCGTCGATTCGCCAAGCCGACCAGTTGA
Gene >Hirsu2|7470
ATGCACTGGATCTTCCCTTGCATCGGAAGTGCCATGACATCCTTTGGGTTCGGTGCCATTAGCGACATCGTTCTC
ACCGTCGTCATTGACTCGTATCCCGATGTGGGCAATCTCGTCTCCTTTTTTTCTTCTTGTTTTTGGCCCGTCTGA
GTCTCGCGACCCCAAACCGACGACGCTAACTTCCGAGTTACCAGATCATCGCCCAAGCCTTCGTCGTCATTGCCT
TTTTCCGCAACGTCCTCAGCATGGCCGGCGTCTTCGGCCTGACGCCTTGGCGCAAGCACATGGGCGCCAAAACCA
TGTTCATCATCGTGGCGTGCGTGAGTTTTGCCGTCACCTTCATGGCGTTGCCCCTTGCCATCTGGGGCAAGAAGG
CCAGGATTGCCACGGCGGATCGATATCGTCGATTCGCCAAGCCGACCAGTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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