Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7469
Gene name
LocationContig_436:4827..5647
Strand+
Gene length (bp)820
Transcript length (bp)642
Coding sequence length (bp)642
Protein length (aa) 214

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 1.1E-15 7 205

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O94343|YHMA_SCHPO Uncharacterized MFS-type transporter C1271.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.10c PE=1 SV=1 15 196 1.0E-09

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0055085 transmembrane transport Yes
GO:0031224 intrinsic component of membrane No
GO:0008150 biological_process No
GO:0006810 transport No
GO:0051179 localization No
GO:0051234 establishment of localization No
GO:0044425 membrane part No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 72 91 19
2 182 204 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7469
MKTLPELFIIDILKGFAGAVNETAVQMSIRDMFFVNQRGTANGIYLAALTSGTTLSPMAAGAQATRFGWRSSYLS
LASVMTVITLLFALAFEETKFVPPVHREGVHIAAHAAAGEKTSGSRHHFRGHGDVDDAAAGLDRVERAPTGMPPQ
RARFRYPRSMRLQLVTPTNESLWKTFYDPIHIWWFPHVLICSLLFGFGLALLLITASMKSGPS*
Coding >Hirsu2|7469
ATGAAGACGCTGCCTGAGCTCTTCATCATCGACATCCTCAAGGGCTTTGCCGGTGCTGTCAACGAGACGGCCGTT
CAGATGAGTATTCGCGACATGTTCTTCGTCAACCAGAGAGGAACGGCCAACGGCATCTACCTGGCCGCCCTCACC
AGCGGCACGACCCTCAGCCCCATGGCCGCCGGGGCGCAGGCGACCAGGTTCGGGTGGCGGTCGTCGTACCTGAGT
CTGGCCTCCGTCATGACCGTCATCACTCTCCTCTTCGCCCTCGCCTTCGAAGAGACCAAGTTCGTCCCGCCCGTC
CATCGAGAGGGCGTCCATATCGCCGCCCACGCCGCCGCCGGCGAGAAGACCAGCGGCAGCCGCCACCATTTCAGG
GGCCATGGTGATGTCGACGACGCGGCGGCGGGCTTGGATCGTGTCGAACGGGCGCCGACGGGGATGCCGCCTCAG
CGGGCCAGATTCCGGTACCCGCGCAGTATGAGGTTGCAACTGGTGACACCGACAAACGAGTCCCTGTGGAAGACC
TTTTACGACCCAATCCACATCTGGTGGTTCCCCCACGTCCTCATCTGCTCCCTCCTATTCGGCTTCGGCCTCGCT
CTGCTGCTCATCACAGCGTCGATGAAATCGGGCCCTTCATAG
Transcript >Hirsu2|7469
ATGAAGACGCTGCCTGAGCTCTTCATCATCGACATCCTCAAGGGCTTTGCCGGTGCTGTCAACGAGACGGCCGTT
CAGATGAGTATTCGCGACATGTTCTTCGTCAACCAGAGAGGAACGGCCAACGGCATCTACCTGGCCGCCCTCACC
AGCGGCACGACCCTCAGCCCCATGGCCGCCGGGGCGCAGGCGACCAGGTTCGGGTGGCGGTCGTCGTACCTGAGT
CTGGCCTCCGTCATGACCGTCATCACTCTCCTCTTCGCCCTCGCCTTCGAAGAGACCAAGTTCGTCCCGCCCGTC
CATCGAGAGGGCGTCCATATCGCCGCCCACGCCGCCGCCGGCGAGAAGACCAGCGGCAGCCGCCACCATTTCAGG
GGCCATGGTGATGTCGACGACGCGGCGGCGGGCTTGGATCGTGTCGAACGGGCGCCGACGGGGATGCCGCCTCAG
CGGGCCAGATTCCGGTACCCGCGCAGTATGAGGTTGCAACTGGTGACACCGACAAACGAGTCCCTGTGGAAGACC
TTTTACGACCCAATCCACATCTGGTGGTTCCCCCACGTCCTCATCTGCTCCCTCCTATTCGGCTTCGGCCTCGCT
CTGCTGCTCATCACAGCGTCGATGAAATCGGGCCCTTCATAG
Gene >Hirsu2|7469
ATGAAGACGCTGCCTGAGCTCTTCATCATCGACATCCTCAAGGGCTTTGCCGGTGCTGTCAACGAGACGGCCGTT
CAGATGAGTGTCCGTCCTATCCCTCCCCTTGCTTCTCCCATCCTTCCTCGCACTTTCACCACTTCTCGCCCCTCC
CCGCCAACCCTCACACTGACGGTGCCCCTCTGACTGCCGCGCTTTCAACAGATTCGCGACATGTTCTTCGTCAAC
CAGAGAGGAACGGCCAACGGCATCTACCTGGCCGCCCTCACCAGCGGCACGACCCTCAGCCCCATGGCCGCCGGG
GCGCAGGCGACCAGGTTCGGGTGGCGGTCGTCGTACCTGAGTCTGGCCTCCGTCATGACCGTCATCACTCTCCTC
TTCGCCCTCGCCTTCGAAGAGACCAAGTTCGTCCCGCCCGTCCATCGAGAGGGCGTCCATATCGCCGCCCACGCC
GCCGCCGGCGAGAAGACCAGCGGCAGCCGCCACCATTTCAGGGGCCATGGTGATGTCGACGACGCGGCGGCGGGC
TTGGATCGTGTCGAACGGGCGCCGACGGGGATGCCGCCTCAGCGGGCCAGATTCCGGTACCCGCGCAGTATGAGG
TTGCAACTGGTGACACCGACAAACGAGTCCCTGTGGAAGACCTTTTACGACCCAATCCACATCTGGTGGTTCCCC
CACGTCCTCATCTGCTCCCTCCTATTCGGCTTCGGCCTCGCTCTGCTGCTCATCACAGCGTCGATGAAGTCCATC
ATCTTCCCCGAGGCGCCCTACAACTTCAACCCCCAACAGCTAGGGCTCCTGCAGATCGGGCCCTTCATAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail