Protein ID | Hirsu2|7461 |
Gene name | |
Location | Contig_435:6052..7279 |
Strand | - |
Gene length (bp) | 1227 |
Transcript length (bp) | 1227 |
Coding sequence length (bp) | 1227 |
Protein length (aa) | 409 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00188 | CAP | Cysteine-rich secretory protein family | 1.4E-10 | 233 | 390 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0857 | 0.0584 | 0.9471 | 0.0721 | 0.0873 | 0.0086 | 0.1339 | 0.1028 | 0.1142 | 0.0019 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 16 | 0.999774 |
Orthofinder run ID | 4 |
Orthogroup | 6247 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7461 MHSLSLLVLALPLVAALPGAAPAPGHVKRWTYTLGDDRARLSQDDVKWRLKQGWQESQIEHLDPNWTREKIQQLK ATGDKGGQGPAEDSSSRPQRQADQERTGGEGVSPPPPTSNRFGDAEGGRHTGRRPQTAPSSVPPPPQQWEGSNEV DAEDGDSPASQQEEDEGIQNRFGVGGDLPDHQQRTGTGAGRPETTNTETPDAESGGGGATTNAGKAGSGAKTTSE QYQQEVVSRHNKARAEYGLSDEEKLQWHEGAAAAAGEWAEKCQRWHPDNKSLPPEKQFGQSIHSFAHNDTRVFGD GEAEHENDVRAFRFAFDDFKREETIYEWNIRNRDDLMARDGGQYYLKVGHFVNIVDKGYGGVACQSRFCSELKTE SGAPLQDHIFVVCDYHMVKWYPNDDPRSVPHKP* |
Coding | >Hirsu2|7461 ATGCATAGCCTGTCCCTCCTCGTCCTGGCCCTCCCGCTCGTCGCGGCCCTGCCCGGCGCCGCCCCGGCCCCCGGC CACGTCAAGCGCTGGACTTACACGCTGGGCGACGACAGGGCTCGCCTGAGCCAGGACGACGTCAAGTGGCGGCTC AAGCAGGGCTGGCAGGAGTCGCAGATCGAACACTTGGATCCGAACTGGACGCGGGAGAAAATCCAGCAGCTGAAG GCGACCGGGGACAAGGGCGGCCAAGGACCGGCGGAGGATTCGTCGTCGCGGCCCCAGAGACAGGCGGATCAGGAG AGGACCGGGGGTGAGGGTGTGTCTCCGCCGCCGCCGACGTCGAACAGATTTGGCGATGCGGAGGGCGGGAGGCAC ACCGGTCGACGGCCGCAGACGGCGCCGTCGTCGGTTCCGCCGCCGCCGCAACAATGGGAGGGCTCGAATGAAGTG GATGCAGAGGATGGTGATTCGCCTGCGTCGCAGCAAGAAGAGGATGAGGGTATCCAAAATAGGTTTGGAGTAGGG GGTGATCTCCCGGACCACCAGCAGCGGACCGGAACGGGTGCCGGCCGCCCCGAGACCACCAACACCGAGACGCCC GATGCCGAGAGCGGTGGCGGCGGAGCGACCACCAATGCCGGGAAGGCTGGTAGCGGAGCGAAGACCACGTCCGAG CAATACCAACAGGAAGTCGTCAGCCGGCACAACAAGGCCAGGGCCGAGTACGGCCTCTCCGACGAGGAGAAGCTA CAGTGGCACGAAGGCGCGGCGGCGGCGGCCGGGGAGTGGGCGGAGAAATGCCAGCGCTGGCACCCTGACAACAAA TCTTTGCCTCCGGAGAAGCAATTCGGCCAGAGCATCCACTCCTTCGCCCACAACGACACCAGAGTCTTCGGCGAC GGCGAGGCCGAGCACGAGAACGACGTCCGAGCCTTCAGATTCGCCTTCGACGACTTCAAGCGCGAGGAGACCATT TACGAATGGAACATCCGCAACCGCGACGATCTCATGGCCAGGGACGGCGGACAATACTACCTCAAGGTCGGGCAC TTCGTCAACATCGTCGATAAGGGATACGGCGGGGTCGCCTGTCAGAGCCGTTTCTGCAGCGAGCTCAAGACAGAG TCTGGGGCGCCGTTACAGGATCACATCTTCGTCGTTTGCGACTACCACATGGTGAAGTGGTACCCGAACGACGAT CCCAGATCCGTCCCCCACAAACCTTAG |
Transcript | >Hirsu2|7461 ATGCATAGCCTGTCCCTCCTCGTCCTGGCCCTCCCGCTCGTCGCGGCCCTGCCCGGCGCCGCCCCGGCCCCCGGC CACGTCAAGCGCTGGACTTACACGCTGGGCGACGACAGGGCTCGCCTGAGCCAGGACGACGTCAAGTGGCGGCTC AAGCAGGGCTGGCAGGAGTCGCAGATCGAACACTTGGATCCGAACTGGACGCGGGAGAAAATCCAGCAGCTGAAG GCGACCGGGGACAAGGGCGGCCAAGGACCGGCGGAGGATTCGTCGTCGCGGCCCCAGAGACAGGCGGATCAGGAG AGGACCGGGGGTGAGGGTGTGTCTCCGCCGCCGCCGACGTCGAACAGATTTGGCGATGCGGAGGGCGGGAGGCAC ACCGGTCGACGGCCGCAGACGGCGCCGTCGTCGGTTCCGCCGCCGCCGCAACAATGGGAGGGCTCGAATGAAGTG GATGCAGAGGATGGTGATTCGCCTGCGTCGCAGCAAGAAGAGGATGAGGGTATCCAAAATAGGTTTGGAGTAGGG GGTGATCTCCCGGACCACCAGCAGCGGACCGGAACGGGTGCCGGCCGCCCCGAGACCACCAACACCGAGACGCCC GATGCCGAGAGCGGTGGCGGCGGAGCGACCACCAATGCCGGGAAGGCTGGTAGCGGAGCGAAGACCACGTCCGAG CAATACCAACAGGAAGTCGTCAGCCGGCACAACAAGGCCAGGGCCGAGTACGGCCTCTCCGACGAGGAGAAGCTA CAGTGGCACGAAGGCGCGGCGGCGGCGGCCGGGGAGTGGGCGGAGAAATGCCAGCGCTGGCACCCTGACAACAAA TCTTTGCCTCCGGAGAAGCAATTCGGCCAGAGCATCCACTCCTTCGCCCACAACGACACCAGAGTCTTCGGCGAC GGCGAGGCCGAGCACGAGAACGACGTCCGAGCCTTCAGATTCGCCTTCGACGACTTCAAGCGCGAGGAGACCATT TACGAATGGAACATCCGCAACCGCGACGATCTCATGGCCAGGGACGGCGGACAATACTACCTCAAGGTCGGGCAC TTCGTCAACATCGTCGATAAGGGATACGGCGGGGTCGCCTGTCAGAGCCGTTTCTGCAGCGAGCTCAAGACAGAG TCTGGGGCGCCGTTACAGGATCACATCTTCGTCGTTTGCGACTACCACATGGTGAAGTGGTACCCGAACGACGAT CCCAGATCCGTCCCCCACAAACCTTAG |
Gene | >Hirsu2|7461 ATGCATAGCCTGTCCCTCCTCGTCCTGGCCCTCCCGCTCGTCGCGGCCCTGCCCGGCGCCGCCCCGGCCCCCGGC CACGTCAAGCGCTGGACTTACACGCTGGGCGACGACAGGGCTCGCCTGAGCCAGGACGACGTCAAGTGGCGGCTC AAGCAGGGCTGGCAGGAGTCGCAGATCGAACACTTGGATCCGAACTGGACGCGGGAGAAAATCCAGCAGCTGAAG GCGACCGGGGACAAGGGCGGCCAAGGACCGGCGGAGGATTCGTCGTCGCGGCCCCAGAGACAGGCGGATCAGGAG AGGACCGGGGGTGAGGGTGTGTCTCCGCCGCCGCCGACGTCGAACAGATTTGGCGATGCGGAGGGCGGGAGGCAC ACCGGTCGACGGCCGCAGACGGCGCCGTCGTCGGTTCCGCCGCCGCCGCAACAATGGGAGGGCTCGAATGAAGTG GATGCAGAGGATGGTGATTCGCCTGCGTCGCAGCAAGAAGAGGATGAGGGTATCCAAAATAGGTTTGGAGTAGGG GGTGATCTCCCGGACCACCAGCAGCGGACCGGAACGGGTGCCGGCCGCCCCGAGACCACCAACACCGAGACGCCC GATGCCGAGAGCGGTGGCGGCGGAGCGACCACCAATGCCGGGAAGGCTGGTAGCGGAGCGAAGACCACGTCCGAG CAATACCAACAGGAAGTCGTCAGCCGGCACAACAAGGCCAGGGCCGAGTACGGCCTCTCCGACGAGGAGAAGCTA CAGTGGCACGAAGGCGCGGCGGCGGCGGCCGGGGAGTGGGCGGAGAAATGCCAGCGCTGGCACCCTGACAACAAA TCTTTGCCTCCGGAGAAGCAATTCGGCCAGAGCATCCACTCCTTCGCCCACAACGACACCAGAGTCTTCGGCGAC GGCGAGGCCGAGCACGAGAACGACGTCCGAGCCTTCAGATTCGCCTTCGACGACTTCAAGCGCGAGGAGACCATT TACGAATGGAACATCCGCAACCGCGACGATCTCATGGCCAGGGACGGCGGACAATACTACCTCAAGGTCGGGCAC TTCGTCAACATCGTCGATAAGGGATACGGCGGGGTCGCCTGTCAGAGCCGTTTCTGCAGCGAGCTCAAGACAGAG TCTGGGGCGCCGTTACAGGATCACATCTTCGTCGTTTGCGACTACCACATGGTGAAGTGGTACCCGAACGACGAT CCCAGATCCGTCCCCCACAAACCTTAG |