Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7460
Gene name
LocationContig_435:1821..4392
Strand-
Gene length (bp)2571
Transcript length (bp)2514
Coding sequence length (bp)2514
Protein length (aa) 838

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03835 Rad4 Rad4 transglutaminase-like domain 1.7E-30 416 529
PF10405 BHD_3 Rad4 beta-hairpin domain 3 1.1E-27 666 738
PF10403 BHD_1 Rad4 beta-hairpin domain 1 1.1E-21 535 590
PF10404 BHD_2 Rad4 beta-hairpin domain 2 1.4E-19 594 659

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10445|RHP41_SCHPO DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 171 777 3.0E-85
sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 420 776 3.0E-55
sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 420 835 2.0E-52
sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 424 776 2.0E-43
sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 424 776 1.0E-41
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Swissprot ID Swissprot Description Start End E-value
sp|Q10445|RHP41_SCHPO DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 171 777 3.0E-85
sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 420 776 3.0E-55
sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 420 835 2.0E-52
sp|P51612|XPC_MOUSE DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 424 776 2.0E-43
sp|Q01831|XPC_HUMAN DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 424 776 1.0E-41
sp|Q24595|XPC_DROME DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2 424 776 5.0E-37
sp|Q8W489|RAD4_ARATH DNA repair protein RAD4 OS=Arabidopsis thaliana GN=RAD4 PE=1 SV=1 421 776 2.0E-33
sp|P14736|RAD4_YEAST DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 103 329 4.0E-15
sp|P87235|RHP42_SCHPO DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 139 351 3.0E-10
sp|Q06665|RAD34_YEAST DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1 538 776 2.0E-09
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GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3996 0.8742 0.0671 0.0129 0.169 0.009 0.0311 0.027 0.0402 0.0036

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3812
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3345
Ophiocordyceps australis map64 (Brazil) OphauB2|7020
Ophiocordyceps camponoti-floridani Ophcf2|01135
Ophiocordyceps camponoti-rufipedis Ophun1|3928
Ophiocordyceps kimflemingae Ophio5|2498
Ophiocordyceps subramaniannii Hirsu2|7460 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7460
MVGRKRAVASRSNRALRSRERNAEPDIYGQMLAEAGVTVQAPDSPERPLKRRRTGAQHQDNVQSSTKAPQQTGKA
SAGAQASGTDEEKEEEDDEELEFQDVALPKPTVQTMERDSDDDEDEEDEDIQFEDVELMTKLDESADKTPEAAEL
ELNLTAQQSSTTPTRRAGERRKPMTKEEKERRVDIHRAHLLCLLSHVARRNHWCNDPTVQEHLRSHLTDKTVAYL
NPGSHLPQFGQAESLKNGLKQAGDVWKTKFEIRERGLRRALWAEDAEQLQNYEPPSNMDSCLDRADFREAARKLQ
GSRDTGAQLYCALLRSAGVRARLVCSLQPLACVSGAPTLPKPKPKPKAPTTPTSSRSRDALANYKAMAEKTNTPP
SPGGPTARRRLGHPNATAYSFKPAPARPASQRTFDVPVTIRESHYPVYWVEVLDTGHQKWQPVDAVVLRSFWKAK
IFEPPITDKENSLCYVVAFEADGTAKDVTRRYAKAYTAKTRKLRVESVLENGDRWWRKVMKLFRGAGPSDLDQIE
NNELAGVEAREPMPRNVQDFKGHPVYALERHLRRNEVLVPGAMPSGTVGAGSRGPLEKIFRRKDVRVARSADKWY
RLGREVKPNEIPAKWLPKKARGRNSRLGIPDEREEEEAQAEAAGTPIYTIDQTELYEPPPVRNGRVPKNKFGNVE
VYVPSMIPRGAVHIVHEQATRAALIAGVDYAPALTGFQFKGRHGTAVLRGVVVAAEFEAAVRAVLDGLAALEREA
ADDRRRLAVLKTWRRLLMGLRIRERIWSGVDADERREAERRAEKQAGVGDDDEADEADDMDGASDATEEFDMVVD
EEEEGGGGFLIE*
Coding >Hirsu2|7460
ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC
GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG
CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA
TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT
GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT
ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG
GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA
AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA
AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC
AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG
TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG
AACTACGAGCCACCCAGCAACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAA
GGATCCCGAGACACGGGGGCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGC
TCGCTGCAGCCCCTGGCATGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACG
ACGCCCACCAGCAGTCGCTCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCT
TCCCCCGGCGGGCCGACGGCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCA
GCCCGACCGGCGAGCCAGCGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTC
GAGGTGCTCGACACGGGCCACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAA
ATCTTCGAGCCCCCCATCACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCC
AAGGATGTGACGAGGAGATATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAG
AACGGCGACCGATGGTGGCGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAG
AACAACGAGCTGGCCGGGGTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTC
TACGCGCTGGAGAGACATTTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCG
GGCAGCCGAGGCCCCCTGGAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTAT
CGCCTGGGGCGCGAGGTGAAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCG
CGGCTTGGGATACCGGACGAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATC
GACCAGACGGAGCTCTACGAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAG
GTCTACGTGCCGAGCATGATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATC
GCCGGCGTCGACTACGCACCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGC
GTCGTCGTCGCGGCCGAGTTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCG
GCGGACGACAGGCGGCGGCTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGG
ATCTGGAGCGGAGTGGACGCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGAC
GACGACGAGGCCGACGAGGCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGAC
GAGGAAGAGGAGGGCGGCGGCGGATTTCTGATCGAATAG
Transcript >Hirsu2|7460
ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC
GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG
CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA
TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT
GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT
ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG
GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA
AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA
AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC
AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG
TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG
AACTACGAGCCACCCAGCAACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAA
GGATCCCGAGACACGGGGGCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGC
TCGCTGCAGCCCCTGGCATGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACG
ACGCCCACCAGCAGTCGCTCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCT
TCCCCCGGCGGGCCGACGGCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCA
GCCCGACCGGCGAGCCAGCGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTC
GAGGTGCTCGACACGGGCCACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAA
ATCTTCGAGCCCCCCATCACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCC
AAGGATGTGACGAGGAGATATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAG
AACGGCGACCGATGGTGGCGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAG
AACAACGAGCTGGCCGGGGTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTC
TACGCGCTGGAGAGACATTTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCG
GGCAGCCGAGGCCCCCTGGAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTAT
CGCCTGGGGCGCGAGGTGAAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCG
CGGCTTGGGATACCGGACGAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATC
GACCAGACGGAGCTCTACGAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAG
GTCTACGTGCCGAGCATGATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATC
GCCGGCGTCGACTACGCACCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGC
GTCGTCGTCGCGGCCGAGTTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCG
GCGGACGACAGGCGGCGGCTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGG
ATCTGGAGCGGAGTGGACGCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGAC
GACGACGAGGCCGACGAGGCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGAC
GAGGAAGAGGAGGGCGGCGGCGGATTTCTGATCGAATAG
Gene >Hirsu2|7460
ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC
GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG
CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA
TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT
GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT
ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG
GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA
AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA
AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC
AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG
TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG
AACGTAGGCGTTCCCCTACTTCGGCGTCTCCTCGACCAAGCGTGCTAACGTCGGACTCAGTACGAGCCACCCAGC
AACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAAGGATCCCGAGACACGGGG
GCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGCTCGCTGCAGCCCCTGGCA
TGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACGACGCCCACCAGCAGTCGC
TCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCTTCCCCCGGCGGGCCGACG
GCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCAGCCCGACCGGCGAGCCAG
CGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTCGAGGTGCTCGACACGGGC
CACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAAATCTTCGAGCCCCCCATC
ACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCCAAGGATGTGACGAGGAGA
TATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAGAACGGCGACCGATGGTGG
CGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAGAACAACGAGCTGGCCGGG
GTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTCTACGCGCTGGAGAGACAT
TTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCGGGCAGCCGAGGCCCCCTG
GAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTATCGCCTGGGGCGCGAGGTG
AAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCGCGGCTTGGGATACCGGAC
GAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATCGACCAGACGGAGCTCTAC
GAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAGGTCTACGTGCCGAGCATG
ATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATCGCCGGCGTCGACTACGCA
CCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGCGTCGTCGTCGCGGCCGAG
TTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCGGCGGACGACAGGCGGCGG
CTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGGATCTGGAGCGGAGTGGAC
GCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGACGACGACGAGGCCGACGAG
GCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGACGAGGAAGAGGAGGGCGGC
GGCGGATTTCTGATCGAATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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