© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7460 |
| Gene name | |
| Location | Contig_435:1821..4392 |
| Strand | - |
| Gene length (bp) | 2571 |
| Transcript length (bp) | 2514 |
| Coding sequence length (bp) | 2514 |
| Protein length (aa) | 838 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03835 | Rad4 | Rad4 transglutaminase-like domain | 1.4E-30 | 416 | 529 |
| PF10405 | BHD_3 | Rad4 beta-hairpin domain 3 | 9.1E-28 | 666 | 738 |
| PF10403 | BHD_1 | Rad4 beta-hairpin domain 1 | 6.4E-22 | 535 | 590 |
| PF10404 | BHD_2 | Rad4 beta-hairpin domain 2 | 1.5E-19 | 594 | 659 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 171 | 777 | 3.0E-85 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 420 | 776 | 3.0E-55 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 420 | 835 | 2.0E-52 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 424 | 776 | 2.0E-43 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 424 | 776 | 1.0E-41 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 171 | 777 | 3.0E-85 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 420 | 776 | 3.0E-55 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 420 | 835 | 2.0E-52 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 424 | 776 | 2.0E-43 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 424 | 776 | 1.0E-41 |
| sp|Q24595|XPC_DROME | DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2 | 424 | 776 | 5.0E-37 |
| sp|Q8W489|RAD4_ARATH | DNA repair protein RAD4 OS=Arabidopsis thaliana GN=RAD4 PE=1 SV=1 | 421 | 776 | 2.0E-33 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 103 | 329 | 4.0E-15 |
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 139 | 351 | 3.0E-10 |
| sp|Q06665|RAD34_YEAST | DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1 | 538 | 776 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7460 MVGRKRAVASRSNRALRSRERNAEPDIYGQMLAEAGVTVQAPDSPERPLKRRRTGAQHQDNVQSSTKAPQQTGKA SAGAQASGTDEEKEEEDDEELEFQDVALPKPTVQTMERDSDDDEDEEDEDIQFEDVELMTKLDESADKTPEAAEL ELNLTAQQSSTTPTRRAGERRKPMTKEEKERRVDIHRAHLLCLLSHVARRNHWCNDPTVQEHLRSHLTDKTVAYL NPGSHLPQFGQAESLKNGLKQAGDVWKTKFEIRERGLRRALWAEDAEQLQNYEPPSNMDSCLDRADFREAARKLQ GSRDTGAQLYCALLRSAGVRARLVCSLQPLACVSGAPTLPKPKPKPKAPTTPTSSRSRDALANYKAMAEKTNTPP SPGGPTARRRLGHPNATAYSFKPAPARPASQRTFDVPVTIRESHYPVYWVEVLDTGHQKWQPVDAVVLRSFWKAK IFEPPITDKENSLCYVVAFEADGTAKDVTRRYAKAYTAKTRKLRVESVLENGDRWWRKVMKLFRGAGPSDLDQIE NNELAGVEAREPMPRNVQDFKGHPVYALERHLRRNEVLVPGAMPSGTVGAGSRGPLEKIFRRKDVRVARSADKWY RLGREVKPNEIPAKWLPKKARGRNSRLGIPDEREEEEAQAEAAGTPIYTIDQTELYEPPPVRNGRVPKNKFGNVE VYVPSMIPRGAVHIVHEQATRAALIAGVDYAPALTGFQFKGRHGTAVLRGVVVAAEFEAAVRAVLDGLAALEREA ADDRRRLAVLKTWRRLLMGLRIRERIWSGVDADERREAERRAEKQAGVGDDDEADEADDMDGASDATEEFDMVVD EEEEGGGGFLIE* |
| Coding | >Hirsu2|7460 ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG AACTACGAGCCACCCAGCAACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAA GGATCCCGAGACACGGGGGCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGC TCGCTGCAGCCCCTGGCATGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACG ACGCCCACCAGCAGTCGCTCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCT TCCCCCGGCGGGCCGACGGCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCA GCCCGACCGGCGAGCCAGCGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTC GAGGTGCTCGACACGGGCCACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAA ATCTTCGAGCCCCCCATCACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCC AAGGATGTGACGAGGAGATATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAG AACGGCGACCGATGGTGGCGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAG AACAACGAGCTGGCCGGGGTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTC TACGCGCTGGAGAGACATTTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCG GGCAGCCGAGGCCCCCTGGAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTAT CGCCTGGGGCGCGAGGTGAAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCG CGGCTTGGGATACCGGACGAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATC GACCAGACGGAGCTCTACGAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAG GTCTACGTGCCGAGCATGATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATC GCCGGCGTCGACTACGCACCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGC GTCGTCGTCGCGGCCGAGTTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCG GCGGACGACAGGCGGCGGCTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGG ATCTGGAGCGGAGTGGACGCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGAC GACGACGAGGCCGACGAGGCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGAC GAGGAAGAGGAGGGCGGCGGCGGATTTCTGATCGAATAG |
| Transcript | >Hirsu2|7460 ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG AACTACGAGCCACCCAGCAACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAA GGATCCCGAGACACGGGGGCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGC TCGCTGCAGCCCCTGGCATGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACG ACGCCCACCAGCAGTCGCTCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCT TCCCCCGGCGGGCCGACGGCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCA GCCCGACCGGCGAGCCAGCGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTC GAGGTGCTCGACACGGGCCACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAA ATCTTCGAGCCCCCCATCACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCC AAGGATGTGACGAGGAGATATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAG AACGGCGACCGATGGTGGCGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAG AACAACGAGCTGGCCGGGGTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTC TACGCGCTGGAGAGACATTTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCG GGCAGCCGAGGCCCCCTGGAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTAT CGCCTGGGGCGCGAGGTGAAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCG CGGCTTGGGATACCGGACGAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATC GACCAGACGGAGCTCTACGAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAG GTCTACGTGCCGAGCATGATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATC GCCGGCGTCGACTACGCACCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGC GTCGTCGTCGCGGCCGAGTTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCG GCGGACGACAGGCGGCGGCTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGG ATCTGGAGCGGAGTGGACGCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGAC GACGACGAGGCCGACGAGGCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGAC GAGGAAGAGGAGGGCGGCGGCGGATTTCTGATCGAATAG |
| Gene | >Hirsu2|7460 ATGGTCGGCAGGAAGCGTGCTGTGGCTTCGCGAAGCAACAGGGCGCTACGTTCTCGCGAAAGAAATGCCGAGCCC GACATCTACGGACAGATGCTGGCCGAGGCCGGGGTGACGGTGCAGGCGCCCGACTCTCCGGAACGGCCCCTGAAG CGGCGGCGAACGGGCGCGCAACATCAGGATAATGTCCAGTCTTCTACCAAAGCCCCCCAACAAACCGGGAAAGCA TCAGCCGGAGCACAAGCGAGTGGCACAGACGAAGAGAAGGAGGAGGAGGACGACGAGGAACTGGAATTTCAAGAT GTCGCCTTACCGAAACCGACGGTCCAGACCATGGAACGGGACTCAGACGACGACGAAGATGAAGAAGATGAAGAT ATTCAGTTCGAGGATGTAGAACTCATGACCAAACTGGACGAATCAGCCGACAAGACACCGGAAGCCGCCGAACTG GAGCTCAATCTCACTGCCCAGCAGTCATCGACGACGCCGACAAGGAGAGCGGGGGAGCGGCGCAAGCCAATGACA AAGGAGGAAAAGGAGCGCCGCGTCGACATCCATCGAGCCCATCTCCTGTGTCTGCTGTCCCACGTCGCACGCCGA AACCATTGGTGCAACGATCCGACGGTACAGGAGCATCTGCGCTCGCATCTGACGGACAAAACGGTCGCCTATCTC AACCCAGGGTCTCACCTGCCGCAGTTCGGGCAGGCAGAGAGCCTGAAGAATGGCCTGAAGCAAGCGGGAGACGTG TGGAAGACCAAGTTTGAGATTCGAGAAAGGGGTCTCCGGAGGGCCCTGTGGGCCGAAGACGCCGAGCAGCTGCAG AACGTAGGCGTTCCCCTACTTCGGCGTCTCCTCGACCAAGCGTGCTAACGTCGGACTCAGTACGAGCCACCCAGC AACATGGACTCCTGTCTGGACCGTGCCGACTTTCGCGAGGCGGCCAGGAAGCTTCAAGGATCCCGAGACACGGGG GCGCAACTGTACTGCGCCCTTCTTCGAAGCGCCGGCGTCCGCGCCCGGCTCGTCTGCTCGCTGCAGCCCCTGGCA TGCGTATCTGGGGCCCCGACGCTGCCGAAGCCGAAGCCGAAGCCGAAGGCGCCGACGACGCCCACCAGCAGTCGC TCTCGAGACGCGTTGGCCAATTACAAGGCCATGGCCGAGAAGACGAACACGCCCCCTTCCCCCGGCGGGCCGACG GCGCGAAGGAGGCTGGGCCACCCGAATGCGACGGCCTACAGCTTCAAGCCGGCCCCAGCCCGACCGGCGAGCCAG CGCACGTTCGACGTGCCCGTGACGATACGCGAGTCGCACTATCCCGTCTACTGGGTCGAGGTGCTCGACACGGGC CACCAAAAATGGCAACCGGTCGATGCCGTCGTCCTGCGCAGCTTCTGGAAAGCCAAAATCTTCGAGCCCCCCATC ACGGACAAGGAGAACAGCCTGTGCTACGTGGTGGCGTTCGAGGCCGACGGCACGGCCAAGGATGTGACGAGGAGA TATGCCAAGGCATACACGGCCAAGACACGCAAGCTACGTGTCGAGAGCGTGCTGGAGAACGGCGACCGATGGTGG CGCAAGGTCATGAAGCTCTTCCGGGGCGCAGGGCCGTCGGACTTGGACCAGATCGAGAACAACGAGCTGGCCGGG GTCGAGGCCCGCGAACCGATGCCGCGGAATGTGCAGGATTTCAAGGGCCACCCGGTCTACGCGCTGGAGAGACAT TTACGGCGAAACGAGGTGCTTGTCCCGGGGGCGATGCCGTCTGGAACGGTCGGGGCGGGCAGCCGAGGCCCCCTG GAGAAGATTTTCCGACGAAAGGACGTCCGGGTCGCGCGGAGCGCGGACAAGTGGTATCGCCTGGGGCGCGAGGTG AAGCCCAACGAGATCCCGGCCAAGTGGCTGCCGAAAAAGGCGCGAGGCCGGAACTCGCGGCTTGGGATACCGGAC GAGCGGGAGGAGGAGGAAGCACAAGCGGAGGCGGCCGGGACGCCGATCTACACGATCGACCAGACGGAGCTCTAC GAGCCGCCGCCGGTACGCAACGGGCGGGTGCCCAAGAACAAGTTCGGCAACGTCGAGGTCTACGTGCCGAGCATG ATACCCCGCGGGGCCGTGCACATCGTGCACGAGCAGGCGACGCGAGCGGCGCTCATCGCCGGCGTCGACTACGCA CCGGCCCTGACGGGCTTCCAGTTCAAGGGACGGCACGGCACGGCGGTGCTCCGCGGCGTCGTCGTCGCGGCCGAG TTCGAGGCGGCCGTGCGGGCGGTGCTCGACGGCCTGGCGGCCCTGGAGCGCGAGGCGGCGGACGACAGGCGGCGG CTGGCCGTGCTCAAGACGTGGAGGCGGCTGCTGATGGGGCTGCGGATCCGCGAGAGGATCTGGAGCGGAGTGGAC GCGGACGAGAGGAGGGAGGCCGAGAGGCGGGCGGAGAAGCAGGCGGGCGTGGGCGACGACGACGAGGCCGACGAG GCCGACGACATGGACGGGGCGAGCGACGCGACGGAGGAGTTCGACATGGTCGTTGACGAGGAAGAGGAGGGCGGC GGCGGATTTCTGATCGAATAG |