Protein ID | Hirsu2|7453 |
Gene name | |
Location | Contig_434:1877..3365 |
Strand | + |
Gene length (bp) | 1488 |
Transcript length (bp) | 1488 |
Coding sequence length (bp) | 1488 |
Protein length (aa) | 496 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.2243 | 0.1436 | 0.1445 | 0.1051 | 0.6029 | 0.0955 | 0.889 | 0.1729 | 0.4197 | 0.0507 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 13 | 35 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3811 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7453 MAESTGWHISKNLFLLSLSLVLQPISSAVIIGFAAWNKCARLLARHAPVPPPRRRTVLVTGVNMSKGLCLARLFH RKGHRVVGADCHALAPGRLSSALDSFHVLPRPGPSSSGDEGSRDPYVLGILDIVRNEAVDLWISVSDVNAAAHDA LARDLVEARTEARAAQLSLKDVQVLHEKHTFIQHARSLGLSTPDTQLVASKGDITDFLAKRGGLRLEPGRRQYLL KPIGVNDQARFNMPLLPLSSEEETVRRIESLPMGGGPEFIMQEFIRGPEFCTHALVVRGRVRAFVACPSSELLMH YAALPGESPLSRKMLAFTERMAKAGGADWTGHVSFDFLVEERQLDSKSGQDDALIYPIECNPRVHTAVVLFNDTP EMVDEYLRILEPDLDGDEELLSPRSPQRYYWVGQDLVESAIYPVYQSLVLRSLSLSQMASSLASFAHRLWGWKDG TFEAWDPWPWWWLYHVYWPMQFLAFLFRGRWHKVNVSTGKAFEAS* |
Coding | >Hirsu2|7453 ATGGCCGAATCAACCGGCTGGCACATTTCCAAGAACCTGTTTCTCCTCTCCCTCAGCCTCGTGCTGCAGCCCATC AGCAGCGCCGTCATCATCGGCTTCGCCGCCTGGAACAAGTGTGCGCGTCTGCTCGCGCGCCATGCGCCCGTCCCG CCGCCTCGTCGGCGGACCGTCCTGGTCACGGGCGTCAACATGTCCAAGGGCCTCTGCCTCGCCCGTCTCTTCCAC CGCAAGGGTCACAGGGTCGTCGGCGCCGATTGCCATGCGCTGGCGCCCGGCCGCCTCTCCTCGGCCCTCGACAGC TTCCATGTGCTTCCGAGGCCCGGGCCCTCTTCGTCCGGCGACGAGGGCAGCCGGGATCCGTACGTCCTTGGCATC CTCGACATTGTCCGCAACGAGGCCGTCGACCTCTGGATCTCCGTTTCGGACGTCAATGCCGCGGCCCACGATGCC CTCGCCCGAGATCTGGTCGAGGCCCGCACCGAGGCCAGGGCGGCCCAGCTCAGCCTCAAGGACGTGCAAGTTCTG CACGAAAAGCACACCTTCATCCAGCACGCCCGCTCTCTCGGCCTCTCCACCCCCGACACCCAGCTCGTCGCCAGC AAAGGCGATATCACCGACTTTCTGGCCAAGCGGGGCGGTCTGCGGCTCGAGCCCGGACGAAGGCAATACCTCCTG AAGCCCATTGGCGTCAACGACCAGGCCCGCTTCAACATGCCGCTGCTGCCGCTCTCGAGTGAGGAGGAAACGGTG CGGCGGATAGAGTCCCTGCCCATGGGCGGCGGGCCCGAGTTCATCATGCAGGAGTTCATCCGCGGCCCCGAGTTC TGCACGCACGCCCTGGTCGTTCGGGGCCGGGTCCGCGCCTTTGTCGCCTGTCCCTCGTCCGAGCTGCTGATGCAC TATGCTGCCCTGCCCGGGGAATCGCCGCTGAGCAGGAAGATGCTCGCGTTCACGGAGCGGATGGCCAAGGCCGGC GGCGCCGACTGGACCGGCCACGTCAGTTTCGACTTCCTGGTCGAGGAGAGGCAGCTGGACAGCAAGTCGGGGCAA GACGACGCGCTCATCTACCCCATCGAGTGCAATCCCAGAGTCCACACCGCCGTTGTGCTCTTCAACGACACGCCA GAGATGGTCGACGAGTACCTCCGCATCCTTGAGCCCGACTTAGACGGGGACGAGGAACTGCTGTCGCCGAGGAGC CCACAGAGGTACTACTGGGTCGGCCAGGATCTCGTCGAGAGCGCCATCTATCCCGTCTACCAGTCGCTCGTCCTG CGGAGCCTGAGCCTCTCGCAGATGGCATCGTCGCTGGCATCCTTCGCTCACCGTCTTTGGGGCTGGAAGGACGGC ACATTCGAGGCCTGGGACCCGTGGCCGTGGTGGTGGCTGTACCACGTCTATTGGCCAATGCAATTCCTAGCCTTT CTGTTCCGCGGTCGATGGCACAAGGTCAATGTCAGTACCGGAAAGGCGTTCGAAGCCAGCTGA |
Transcript | >Hirsu2|7453 ATGGCCGAATCAACCGGCTGGCACATTTCCAAGAACCTGTTTCTCCTCTCCCTCAGCCTCGTGCTGCAGCCCATC AGCAGCGCCGTCATCATCGGCTTCGCCGCCTGGAACAAGTGTGCGCGTCTGCTCGCGCGCCATGCGCCCGTCCCG CCGCCTCGTCGGCGGACCGTCCTGGTCACGGGCGTCAACATGTCCAAGGGCCTCTGCCTCGCCCGTCTCTTCCAC CGCAAGGGTCACAGGGTCGTCGGCGCCGATTGCCATGCGCTGGCGCCCGGCCGCCTCTCCTCGGCCCTCGACAGC TTCCATGTGCTTCCGAGGCCCGGGCCCTCTTCGTCCGGCGACGAGGGCAGCCGGGATCCGTACGTCCTTGGCATC CTCGACATTGTCCGCAACGAGGCCGTCGACCTCTGGATCTCCGTTTCGGACGTCAATGCCGCGGCCCACGATGCC CTCGCCCGAGATCTGGTCGAGGCCCGCACCGAGGCCAGGGCGGCCCAGCTCAGCCTCAAGGACGTGCAAGTTCTG CACGAAAAGCACACCTTCATCCAGCACGCCCGCTCTCTCGGCCTCTCCACCCCCGACACCCAGCTCGTCGCCAGC AAAGGCGATATCACCGACTTTCTGGCCAAGCGGGGCGGTCTGCGGCTCGAGCCCGGACGAAGGCAATACCTCCTG AAGCCCATTGGCGTCAACGACCAGGCCCGCTTCAACATGCCGCTGCTGCCGCTCTCGAGTGAGGAGGAAACGGTG CGGCGGATAGAGTCCCTGCCCATGGGCGGCGGGCCCGAGTTCATCATGCAGGAGTTCATCCGCGGCCCCGAGTTC TGCACGCACGCCCTGGTCGTTCGGGGCCGGGTCCGCGCCTTTGTCGCCTGTCCCTCGTCCGAGCTGCTGATGCAC TATGCTGCCCTGCCCGGGGAATCGCCGCTGAGCAGGAAGATGCTCGCGTTCACGGAGCGGATGGCCAAGGCCGGC GGCGCCGACTGGACCGGCCACGTCAGTTTCGACTTCCTGGTCGAGGAGAGGCAGCTGGACAGCAAGTCGGGGCAA GACGACGCGCTCATCTACCCCATCGAGTGCAATCCCAGAGTCCACACCGCCGTTGTGCTCTTCAACGACACGCCA GAGATGGTCGACGAGTACCTCCGCATCCTTGAGCCCGACTTAGACGGGGACGAGGAACTGCTGTCGCCGAGGAGC CCACAGAGGTACTACTGGGTCGGCCAGGATCTCGTCGAGAGCGCCATCTATCCCGTCTACCAGTCGCTCGTCCTG CGGAGCCTGAGCCTCTCGCAGATGGCATCGTCGCTGGCATCCTTCGCTCACCGTCTTTGGGGCTGGAAGGACGGC ACATTCGAGGCCTGGGACCCGTGGCCGTGGTGGTGGCTGTACCACGTCTATTGGCCAATGCAATTCCTAGCCTTT CTGTTCCGCGGTCGATGGCACAAGGTCAATGTCAGTACCGGAAAGGCGTTCGAAGCCAGCTGA |
Gene | >Hirsu2|7453 ATGGCCGAATCAACCGGCTGGCACATTTCCAAGAACCTGTTTCTCCTCTCCCTCAGCCTCGTGCTGCAGCCCATC AGCAGCGCCGTCATCATCGGCTTCGCCGCCTGGAACAAGTGTGCGCGTCTGCTCGCGCGCCATGCGCCCGTCCCG CCGCCTCGTCGGCGGACCGTCCTGGTCACGGGCGTCAACATGTCCAAGGGCCTCTGCCTCGCCCGTCTCTTCCAC CGCAAGGGTCACAGGGTCGTCGGCGCCGATTGCCATGCGCTGGCGCCCGGCCGCCTCTCCTCGGCCCTCGACAGC TTCCATGTGCTTCCGAGGCCCGGGCCCTCTTCGTCCGGCGACGAGGGCAGCCGGGATCCGTACGTCCTTGGCATC CTCGACATTGTCCGCAACGAGGCCGTCGACCTCTGGATCTCCGTTTCGGACGTCAATGCCGCGGCCCACGATGCC CTCGCCCGAGATCTGGTCGAGGCCCGCACCGAGGCCAGGGCGGCCCAGCTCAGCCTCAAGGACGTGCAAGTTCTG CACGAAAAGCACACCTTCATCCAGCACGCCCGCTCTCTCGGCCTCTCCACCCCCGACACCCAGCTCGTCGCCAGC AAAGGCGATATCACCGACTTTCTGGCCAAGCGGGGCGGTCTGCGGCTCGAGCCCGGACGAAGGCAATACCTCCTG AAGCCCATTGGCGTCAACGACCAGGCCCGCTTCAACATGCCGCTGCTGCCGCTCTCGAGTGAGGAGGAAACGGTG CGGCGGATAGAGTCCCTGCCCATGGGCGGCGGGCCCGAGTTCATCATGCAGGAGTTCATCCGCGGCCCCGAGTTC TGCACGCACGCCCTGGTCGTTCGGGGCCGGGTCCGCGCCTTTGTCGCCTGTCCCTCGTCCGAGCTGCTGATGCAC TATGCTGCCCTGCCCGGGGAATCGCCGCTGAGCAGGAAGATGCTCGCGTTCACGGAGCGGATGGCCAAGGCCGGC GGCGCCGACTGGACCGGCCACGTCAGTTTCGACTTCCTGGTCGAGGAGAGGCAGCTGGACAGCAAGTCGGGGCAA GACGACGCGCTCATCTACCCCATCGAGTGCAATCCCAGAGTCCACACCGCCGTTGTGCTCTTCAACGACACGCCA GAGATGGTCGACGAGTACCTCCGCATCCTTGAGCCCGACTTAGACGGGGACGAGGAACTGCTGTCGCCGAGGAGC CCACAGAGGTACTACTGGGTCGGCCAGGATCTCGTCGAGAGCGCCATCTATCCCGTCTACCAGTCGCTCGTCCTG CGGAGCCTGAGCCTCTCGCAGATGGCATCGTCGCTGGCATCCTTCGCTCACCGTCTTTGGGGCTGGAAGGACGGC ACATTCGAGGCCTGGGACCCGTGGCCGTGGTGGTGGCTGTACCACGTCTATTGGCCAATGCAATTCCTAGCCTTT CTGTTCCGCGGTCGATGGCACAAGGTCAATGTCAGTACCGGAAAGGCGTTCGAAGCCAGCTGA |