Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7445
Gene name
LocationContig_433:7411..7624
Strand+
Gene length (bp)213
Transcript length (bp)213
Coding sequence length (bp)213
Protein length (aa) 71

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0512 0.0412 0.9787 0.0334 0.0929 0.0067 0.069 0.049 0.036 0.0036

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.999611

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 44 66 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup10366
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|7445 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7445
MHASLALVSLLAGLVAAAPTPTNGAGVAVAGGGPGFGGGPGFGGGPGFGGGPGFGGGFGPGFGGFGVKKE*
Coding >Hirsu2|7445
ATGCACGCCTCACTCGCCCTCGTCTCGCTGCTTGCTGGCCTGGTTGCCGCAGCACCCACCCCGACCAACGGCGCC
GGCGTCGCCGTCGCCGGCGGCGGTCCTGGTTTCGGCGGCGGTCCTGGTTTCGGAGGCGGCCCTGGTTTCGGAGGC
GGTCCTGGTTTCGGAGGTGGCTTCGGCCCCGGCTTCGGCGGCTTCGGCGTGAAGAAAGAATAA
Transcript >Hirsu2|7445
ATGCACGCCTCACTCGCCCTCGTCTCGCTGCTTGCTGGCCTGGTTGCCGCAGCACCCACCCCGACCAACGGCGCC
GGCGTCGCCGTCGCCGGCGGCGGTCCTGGTTTCGGCGGCGGTCCTGGTTTCGGAGGCGGCCCTGGTTTCGGAGGC
GGTCCTGGTTTCGGAGGTGGCTTCGGCCCCGGCTTCGGCGGCTTCGGCGTGAAGAAAGAATAA
Gene >Hirsu2|7445
ATGCACGCCTCACTCGCCCTCGTCTCGCTGCTTGCTGGCCTGGTTGCCGCAGCACCCACCCCGACCAACGGCGCC
GGCGTCGCCGTCGCCGGCGGCGGTCCTGGTTTCGGCGGCGGTCCTGGTTTCGGAGGCGGCCCTGGTTTCGGAGGC
GGTCCTGGTTTCGGAGGTGGCTTCGGCCCCGGCTTCGGCGGCTTCGGCGTGAAGAAAGAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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