© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7420 |
| Gene name | |
| Location | Contig_43:47672..49247 |
| Strand | - |
| Gene length (bp) | 1575 |
| Transcript length (bp) | 1512 |
| Coding sequence length (bp) | 1512 |
| Protein length (aa) | 504 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-09 | 311 | 363 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IQW0|NOP12_GIBZE | Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1 | 59 | 501 | 2.0E-173 |
| sp|Q7S2L7|NOP12_NEUCR | Nucleolar protein 12 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop-12 PE=3 SV=1 | 83 | 498 | 2.0E-139 |
| sp|Q4WCH5|NOP12_ASPFU | Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1 | 85 | 490 | 2.0E-100 |
| sp|Q5BDC8|NOP12_EMENI | Nucleolar protein 12 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nop12 PE=3 SV=1 | 33 | 464 | 9.0E-93 |
| sp|Q6C2Q7|NOP12_YARLI | Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOP12 PE=3 SV=1 | 94 | 497 | 1.0E-51 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IQW0|NOP12_GIBZE | Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1 | 59 | 501 | 2.0E-173 |
| sp|Q7S2L7|NOP12_NEUCR | Nucleolar protein 12 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop-12 PE=3 SV=1 | 83 | 498 | 2.0E-139 |
| sp|Q4WCH5|NOP12_ASPFU | Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1 | 85 | 490 | 2.0E-100 |
| sp|Q5BDC8|NOP12_EMENI | Nucleolar protein 12 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nop12 PE=3 SV=1 | 33 | 464 | 9.0E-93 |
| sp|Q6C2Q7|NOP12_YARLI | Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOP12 PE=3 SV=1 | 94 | 497 | 1.0E-51 |
| sp|Q6FUS6|NOP12_CANGA | Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3 SV=1 | 151 | 499 | 1.0E-48 |
| sp|Q08208|NOP12_YEAST | Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP12 PE=1 SV=1 | 33 | 430 | 3.0E-47 |
| sp|O13741|NOP12_SCHPO | Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop12 PE=1 SV=1 | 63 | 442 | 1.0E-45 |
| sp|Q75BJ7|NOP12_ASHGO | Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1 | 90 | 430 | 1.0E-43 |
| sp|Q6BTS9|NOP12_DEBHA | Nucleolar protein 12 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP12 PE=3 SV=2 | 50 | 430 | 9.0E-43 |
| sp|Q6CKV6|NOP12_KLULA | Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NOP12 PE=3 SV=2 | 151 | 485 | 1.0E-41 |
| sp|Q5AHI7|NOP12_CANAL | Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NOP12 PE=3 SV=1 | 87 | 427 | 2.0E-37 |
| sp|Q5M9F1|RBM34_RAT | RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=1 SV=1 | 60 | 389 | 3.0E-20 |
| sp|P42696|RBM34_HUMAN | RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2 | 130 | 376 | 2.0E-18 |
| sp|Q8C5L7|RBM34_MOUSE | RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1 | 157 | 376 | 1.0E-16 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.1511 | 0.9368 | 0.0608 | 0.0072 | 0.0439 | 0.0055 | 0.0413 | 0.0029 | 0.0048 | 0.0006 |
| Orthofinder run ID | 4 |
| Orthogroup | 3801 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7420 LEKNIRLAQKQDLSGSDVDEGDDGELSEASKELDDDEKDEGASDASSEKSDGAATDDSKDGPESVEHVASATSAT QIEQPRRERKRKRKDDNDDLEAKYLAELSKDDVPPPDEKRQKGEQGGDANDNDEDDDDDQVVPVHESLGQDSRAP DLERAGRTIFLGNVSTEAITSKHAKKTLTSHLSSVLDSNGPAPEKLESLRFRSVAFSTGSMPKRAAYITKSIMGS TTKSANAYAVFSSSAAARKVVSSLNGSEVLGRHIRVDSVAHPSPMDHRRCVFVGNLEFVDDETVLNTNSEGKTVE KKRNKVPADVEEGLWRTFGKQGKVENVRVVRDPKTRIGKGFAYVQFYDGNDVEAALLLDGKKFPPMLPRALRVTR AKAPHKTALAQERSRAKAIASGDTARRTKYERKISAEEQAAAGRAGKLLGRAGAALQRRQDHAGAPGGASAAVRK SPEQIVFEGRRASAKDGRPKDLKLGKKGKKARAAKPKTRSARRGADWKKKKAA* |
| Coding | >Hirsu2|7420 CTGGAAAAGAACATCAGGCTAGCGCAGAAGCAGGATTTGTCCGGGTCAGACGTCGATGAGGGCGACGACGGCGAG CTCTCAGAAGCAAGCAAAGAGCTGGATGACGATGAGAAAGATGAAGGCGCCTCGGATGCTTCCAGCGAGAAATCG GATGGCGCGGCTACCGATGACAGCAAAGATGGCCCAGAGAGCGTTGAGCATGTCGCCTCGGCCACTTCCGCAACC CAGATAGAGCAGCCTCGACGGGAGAGAAAACGCAAGCGAAAAGACGACAACGACGACCTCGAAGCAAAGTACTTG GCTGAGTTGAGCAAAGACGACGTCCCTCCACCCGACGAGAAGCGTCAAAAGGGCGAACAGGGTGGCGACGCCAAC GACAACGACGAAGACGACGACGATGATCAGGTTGTCCCTGTCCACGAATCCCTTGGACAAGACTCCCGTGCGCCG GACTTGGAAAGAGCCGGTCGGACCATCTTCCTCGGCAACGTTTCGACCGAGGCCATCACGTCCAAGCATGCCAAG AAGACGCTCACCAGCCATCTGTCATCGGTTCTCGATTCAAATGGTCCAGCTCCCGAGAAGCTCGAGTCGTTGCGT TTCCGATCCGTCGCCTTTTCAACGGGTTCCATGCCCAAGAGAGCTGCCTACATCACCAAGTCTATCATGGGCTCC ACGACAAAGTCTGCCAATGCCTACGCCGTCTTTTCTTCGTCCGCCGCAGCCCGGAAAGTCGTCTCCAGCCTCAAC GGCAGCGAGGTTCTGGGCCGGCATATCAGGGTGGACAGCGTTGCGCATCCCAGCCCCATGGACCACCGCCGTTGC GTCTTTGTGGGCAACCTCGAGTTCGTCGACGACGAGACCGTGCTCAACACCAACAGCGAGGGCAAGACTGTGGAG AAGAAGCGGAACAAAGTTCCGGCCGACGTGGAAGAAGGGCTGTGGAGAACGTTCGGAAAGCAGGGAAAAGTGGAA AACGTCCGCGTCGTGCGCGACCCCAAGACCAGGATCGGCAAGGGATTCGCCTATGTTCAGTTCTATGACGGCAAC GATGTCGAGGCCGCCCTGCTCCTCGACGGGAAGAAGTTTCCGCCCATGCTCCCCCGTGCGCTACGCGTGACCAGG GCCAAAGCCCCCCACAAGACGGCCCTGGCCCAGGAGCGCAGCAGGGCAAAGGCCATCGCCTCCGGCGACACCGCC CGCAGGACCAAGTACGAGCGCAAGATCTCGGCCGAGGAACAGGCCGCCGCGGGGCGCGCCGGCAAGCTCCTGGGC CGAGCCGGCGCGGCGCTGCAGCGGAGACAGGACCACGCCGGCGCGCCGGGCGGCGCGTCAGCCGCCGTGAGGAAG TCGCCCGAGCAAATCGTCTTCGAGGGCAGGAGGGCCTCGGCCAAGGACGGCCGCCCCAAGGACCTCAAGCTGGGC AAGAAGGGCAAGAAGGCGAGGGCGGCCAAGCCCAAGACGAGGAGCGCGCGCCGCGGAGCCGACTGGAAGAAGAAG AAGGCGGCGTGA |
| Transcript | >Hirsu2|7420 CTGGAAAAGAACATCAGGCTAGCGCAGAAGCAGGATTTGTCCGGGTCAGACGTCGATGAGGGCGACGACGGCGAG CTCTCAGAAGCAAGCAAAGAGCTGGATGACGATGAGAAAGATGAAGGCGCCTCGGATGCTTCCAGCGAGAAATCG GATGGCGCGGCTACCGATGACAGCAAAGATGGCCCAGAGAGCGTTGAGCATGTCGCCTCGGCCACTTCCGCAACC CAGATAGAGCAGCCTCGACGGGAGAGAAAACGCAAGCGAAAAGACGACAACGACGACCTCGAAGCAAAGTACTTG GCTGAGTTGAGCAAAGACGACGTCCCTCCACCCGACGAGAAGCGTCAAAAGGGCGAACAGGGTGGCGACGCCAAC GACAACGACGAAGACGACGACGATGATCAGGTTGTCCCTGTCCACGAATCCCTTGGACAAGACTCCCGTGCGCCG GACTTGGAAAGAGCCGGTCGGACCATCTTCCTCGGCAACGTTTCGACCGAGGCCATCACGTCCAAGCATGCCAAG AAGACGCTCACCAGCCATCTGTCATCGGTTCTCGATTCAAATGGTCCAGCTCCCGAGAAGCTCGAGTCGTTGCGT TTCCGATCCGTCGCCTTTTCAACGGGTTCCATGCCCAAGAGAGCTGCCTACATCACCAAGTCTATCATGGGCTCC ACGACAAAGTCTGCCAATGCCTACGCCGTCTTTTCTTCGTCCGCCGCAGCCCGGAAAGTCGTCTCCAGCCTCAAC GGCAGCGAGGTTCTGGGCCGGCATATCAGGGTGGACAGCGTTGCGCATCCCAGCCCCATGGACCACCGCCGTTGC GTCTTTGTGGGCAACCTCGAGTTCGTCGACGACGAGACCGTGCTCAACACCAACAGCGAGGGCAAGACTGTGGAG AAGAAGCGGAACAAAGTTCCGGCCGACGTGGAAGAAGGGCTGTGGAGAACGTTCGGAAAGCAGGGAAAAGTGGAA AACGTCCGCGTCGTGCGCGACCCCAAGACCAGGATCGGCAAGGGATTCGCCTATGTTCAGTTCTATGACGGCAAC GATGTCGAGGCCGCCCTGCTCCTCGACGGGAAGAAGTTTCCGCCCATGCTCCCCCGTGCGCTACGCGTGACCAGG GCCAAAGCCCCCCACAAGACGGCCCTGGCCCAGGAGCGCAGCAGGGCAAAGGCCATCGCCTCCGGCGACACCGCC CGCAGGACCAAGTACGAGCGCAAGATCTCGGCCGAGGAACAGGCCGCCGCGGGGCGCGCCGGCAAGCTCCTGGGC CGAGCCGGCGCGGCGCTGCAGCGGAGACAGGACCACGCCGGCGCGCCGGGCGGCGCGTCAGCCGCCGTGAGGAAG TCGCCCGAGCAAATCGTCTTCGAGGGCAGGAGGGCCTCGGCCAAGGACGGCCGCCCCAAGGACCTCAAGCTGGGC AAGAAGGGCAAGAAGGCGAGGGCGGCCAAGCCCAAGACGAGGAGCGCGCGCCGCGGAGCCGACTGGAAGAAGAAG AAGGCGGCGTGA |
| Gene | >Hirsu2|7420 CTGGAAAAGAACATCAGGCTAGCGCAGAAGCAGGATTTGTCCGGGTCAGACGTCGATGAGGGCGACGACGGCGAG CTCTCAGAAGCAAGCAAAGAGCTGGATGACGATGAGAAAGATGAAGGCGCCTCGGATGCTTCCAGCGAGAAATCG GATGGCGCGGCTACCGATGACAGCAAAGATGGCCCAGAGAGCGTTGAGCATGTCGCCTCGGCCACTTCCGCAACC CAGATAGAGCAGCCTCGACGGGAGAGAAAACGCAAGCGAAAAGACGACAACGACGACCTCGAAGCAAAGTACTTG GCTGAGTTGAGCAAAGACGACGTCCCTCCACCCGACGAGAAGCGTCAAAAGGGCGAACAGGGTGGCGACGCCAAC GACAACGACGAAGACGACGACGATGATCAGGTTGTCCCTGTCCACGAATCCCTTGGACAAGACTCCCGTGCGCCG GACTTGGAAAGAGCCGGTCGGACCATCTTCCTCGGCAACGTTTCGACCGAGGCCATCACGTCCAAGCATGCCAAG AAGACGCTCACCAGCCATCTGTCATCGGTTCTCGATTCAAATGGTCCAGCTCCCGAGAAGCTCGAGTCGTTGCGT TTCCGATCCGTCGCCTTTTCAACGGGTTCCATGCCCAAGAGAGCTGCCTACATCACCAAGTCTATCATGGGCTCC ACGACAAAGTCTGCCAATGCCTACGCCGTCTTTTCTTCGTCCGCCGCAGCCCGGAAAGTCGTCTCCAGCCTCAAC GGCAGCGAGGTTCTGGGCCGGCATATCAGGGTGGACAGCGTTGCGCATCCCAGCCCCATGGACCACCGCCGTTGC GTCTTTGTGGGCAACCTCGAGTTCGTCGACGACGAGACCGTGCTCAACACCAACAGCGAGGGCAAGACTGTGGAG AAGAAGCGGAACAAAGTTCCGGCCGACGTGGAAGAAGGGCTGTGGAGAACGTTCGGAAAGCAGGGAAAAGTGGAA AACGTCCGCGTCGTGCGCGACCCCAAGACCAGGATCGGCAAGGGATTCGCCTATGTTCAGTTCTATGTGAGTGCC GGTGCAGGCCCAGGTAGAGCCTCGCAACCCCCGCCCATGCTAACCCCTCGGCAGGACGGCAACGATGTCGAGGCC GCCCTGCTCCTCGACGGGAAGAAGTTTCCGCCCATGCTCCCCCGTGCGCTACGCGTGACCAGGGCCAAAGCCCCC CACAAGACGGCCCTGGCCCAGGAGCGCAGCAGGGCAAAGGCCATCGCCTCCGGCGACACCGCCCGCAGGACCAAG TACGAGCGCAAGATCTCGGCCGAGGAACAGGCCGCCGCGGGGCGCGCCGGCAAGCTCCTGGGCCGAGCCGGCGCG GCGCTGCAGCGGAGACAGGACCACGCCGGCGCGCCGGGCGGCGCGTCAGCCGCCGTGAGGAAGTCGCCCGAGCAA ATCGTCTTCGAGGGCAGGAGGGCCTCGGCCAAGGACGGCCGCCCCAAGGACCTCAAGCTGGGCAAGAAGGGCAAG AAGGCGAGGGCGGCCAAGCCCAAGACGAGGAGCGCGCGCCGCGGAGCCGACTGGAAGAAGAAGAAGGCGGCGTGA |