Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7415
Gene name
LocationContig_43:37967..38624
Strand+
Gene length (bp)657
Transcript length (bp)504
Coding sequence length (bp)504
Protein length (aa) 168

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P42116|NURM_NEUCR NADH-ubiquinone oxidoreductase 17.8 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo17.8 PE=1 SV=1 12 163 3.0E-22

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 40 62 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7415
MLPAARQRAGHLARQLQRTARSYASDAHGHHTPAQQANESFGTGSLLFISAFLGGCFVYNVAPRQGDKSAITDMI
AKYISRPEDWEEINTLHTKAMEQAGYDRNIFENLSNTRRTVDVAYPEALQSHAPRNVRAGQLRNLDDVVEHFRQQ
HLKDEERKAKRLAERQS*
Coding >Hirsu2|7415
ATGCTCCCCGCCGCGCGACAACGGGCGGGCCATCTTGCCCGCCAGCTGCAGCGGACGGCCCGCAGCTACGCCTCC
GACGCTCACGGCCACCACACGCCGGCCCAGCAGGCCAACGAGTCGTTTGGGACGGGCTCCCTCCTCTTCATCTCC
GCCTTCCTCGGCGGCTGCTTCGTCTACAATGTAGCTCCGCGCCAAGGCGACAAGTCGGCCATCACCGACATGATT
GCCAAGTACATCTCCAGGCCCGAGGACTGGGAGGAGATCAACACCCTGCACACAAAGGCCATGGAGCAGGCCGGC
TACGACCGAAACATATTCGAGAACCTGTCCAATACCCGGCGAACCGTCGACGTGGCCTACCCCGAGGCACTTCAG
TCCCACGCGCCGCGCAATGTCCGGGCCGGTCAGCTCAGGAATCTGGACGATGTCGTGGAGCACTTCCGGCAGCAG
CACCTCAAGGACGAGGAGCGGAAAGCCAAGAGGCTGGCGGAGCGGCAATCTTGA
Transcript >Hirsu2|7415
ATGCTCCCCGCCGCGCGACAACGGGCGGGCCATCTTGCCCGCCAGCTGCAGCGGACGGCCCGCAGCTACGCCTCC
GACGCTCACGGCCACCACACGCCGGCCCAGCAGGCCAACGAGTCGTTTGGGACGGGCTCCCTCCTCTTCATCTCC
GCCTTCCTCGGCGGCTGCTTCGTCTACAATGTAGCTCCGCGCCAAGGCGACAAGTCGGCCATCACCGACATGATT
GCCAAGTACATCTCCAGGCCCGAGGACTGGGAGGAGATCAACACCCTGCACACAAAGGCCATGGAGCAGGCCGGC
TACGACCGAAACATATTCGAGAACCTGTCCAATACCCGGCGAACCGTCGACGTGGCCTACCCCGAGGCACTTCAG
TCCCACGCGCCGCGCAATGTCCGGGCCGGTCAGCTCAGGAATCTGGACGATGTCGTGGAGCACTTCCGGCAGCAG
CACCTCAAGGACGAGGAGCGGAAAGCCAAGAGGCTGGCGGAGCGGCAATCTTGA
Gene >Hirsu2|7415
ATGCTCCCCGCCGCGCGACAACGGGCGGGCCATCTTGCCCGCCAGCTGCAGCGGACGGCCCGCAGCTACGCCTCC
GACGCTCACGGCCACCACACGCCGGCCCAGCAGGCCAACGAGTCGTTTGGGGTACGGGCCGCTCCCCCTTGCCGC
GGCGGCGAAGCAGGGCACGCCGACGGCCGCCGTCGAGGGACGTTGCTGACTCGGTTGTCTGCCCACAGACGGGCT
CCCTCCTCTTCATCTCCGCCTTCCTCGGCGGCTGCTTCGTCTACAATGTAGCTCCGCGCCAAGGCGACAAGTCGG
CCATCACCGACATGATTGCCAAGTACATCTCCAGGCCCGAGGACTGGGAGGAGATCAACACCCTGCACACAAAGG
CCATGGAGCAGGCCGGCTACGACCGAAACATATTCGAGAACCTGTCCAATACCCGGCGAACCGTCGACGTGGCCT
ACCCCGAGTATGATTGCAGTCCGCTGGCCCACCCGAGGCGAGAGCTCGAAGCTGACACGTTGGTCCAGGGCACTT
CAGTCCCACGCGCCGCGCAATGTCCGGGCCGGTCAGCTCAGGAATCTGGACGATGTCGTGGAGCACTTCCGGCAG
CAGCACCTCAAGGACGAGGAGCGGAAAGCCAAGAGGCTGGCGGAGCGGCAATCTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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