© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7397 |
| Gene name | |
| Location | Contig_429:18351..19265 |
| Strand | + |
| Gene length (bp) | 914 |
| Transcript length (bp) | 825 |
| Coding sequence length (bp) | 825 |
| Protein length (aa) | 275 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00403 | HMA | Heavy-metal-associated domain | 7.4E-07 | 39 | 93 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38360|ATU1_YEAST | P-type cation-transporting ATPase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCA1 PE=1 SV=2 | 3 | 267 | 2.0E-78 |
| sp|Q9SH30|HMA5_ARATH | Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=1 SV=2 | 5 | 271 | 8.0E-11 |
| sp|Q9XT50|ATP7B_SHEEP | Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1 | 30 | 265 | 1.0E-09 |
| sp|Q64446|ATP7B_MOUSE | Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=2 | 29 | 265 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 184 | 206 | 22 |
| 2 | 211 | 233 | 22 |
| 3 | 240 | 262 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7397 MPHASLTLKRVRADKANAVPSASDVENQAVGSEHVVLCVSGMTCTGCETKLNRTLATVHGVGSLKTSLVLSRAEF DVDLRLVAVADVIKHLERTTEFKCERIADRGSSLDVLVAGDGTSFVDRPWPEGVMDMSLADKGVVRITFDPAIVG ARDLLTTHLGPDVRLAPVCADASLKAGGKHVRHVGFVTMLSSVLTVPVLVMAWAPLPKHEMAYSSASLALATIVQ IFVAGPFYPKALKALVFSRVIEMDLLIVLSTSAAYVFSTVSFSRRARCS* |
| Coding | >Hirsu2|7397 ATGCCGCACGCCTCTCTCACGCTCAAGCGCGTCCGAGCGGACAAAGCCAACGCCGTGCCCTCGGCAAGTGATGTT GAGAACCAGGCCGTTGGCAGCGAACACGTCGTCCTCTGCGTCTCCGGCATGACCTGCACCGGCTGCGAGACGAAG CTGAACCGGACCCTGGCGACGGTCCACGGCGTCGGGAGCCTGAAGACGAGCTTGGTTCTCTCGCGGGCCGAGTTC GACGTCGACCTCCGACTGGTCGCCGTCGCCGACGTCATAAAGCACCTGGAACGAACGACCGAGTTCAAGTGCGAG CGGATCGCCGACAGGGGATCGAGCTTGGACGTCCTCGTCGCCGGAGACGGGACCAGCTTCGTCGACCGGCCGTGG CCCGAGGGGGTCATGGACATGAGTCTCGCCGACAAGGGCGTGGTGCGGATCACATTCGACCCGGCCATCGTCGGC GCCAGAGATCTCCTCACGACGCACCTGGGCCCCGACGTGAGACTTGCTCCCGTGTGCGCCGACGCTTCGCTCAAG GCCGGGGGCAAACACGTCCGCCACGTCGGCTTCGTGACGATGCTGTCCTCGGTCTTGACCGTGCCGGTCCTGGTC ATGGCGTGGGCCCCGCTGCCGAAACATGAGATGGCCTACAGCTCGGCGTCGCTGGCCCTGGCCACCATCGTCCAG ATCTTCGTCGCGGGACCCTTCTACCCCAAGGCGCTCAAGGCGCTCGTCTTCTCCCGCGTCATCGAAATGGACCTG CTCATCGTGCTCAGCACCAGCGCCGCCTACGTCTTCTCTACCGTCTCTTTTTCGAGACGAGCACGCTGCTCGTGA |
| Transcript | >Hirsu2|7397 ATGCCGCACGCCTCTCTCACGCTCAAGCGCGTCCGAGCGGACAAAGCCAACGCCGTGCCCTCGGCAAGTGATGTT GAGAACCAGGCCGTTGGCAGCGAACACGTCGTCCTCTGCGTCTCCGGCATGACCTGCACCGGCTGCGAGACGAAG CTGAACCGGACCCTGGCGACGGTCCACGGCGTCGGGAGCCTGAAGACGAGCTTGGTTCTCTCGCGGGCCGAGTTC GACGTCGACCTCCGACTGGTCGCCGTCGCCGACGTCATAAAGCACCTGGAACGAACGACCGAGTTCAAGTGCGAG CGGATCGCCGACAGGGGATCGAGCTTGGACGTCCTCGTCGCCGGAGACGGGACCAGCTTCGTCGACCGGCCGTGG CCCGAGGGGGTCATGGACATGAGTCTCGCCGACAAGGGCGTGGTGCGGATCACATTCGACCCGGCCATCGTCGGC GCCAGAGATCTCCTCACGACGCACCTGGGCCCCGACGTGAGACTTGCTCCCGTGTGCGCCGACGCTTCGCTCAAG GCCGGGGGCAAACACGTCCGCCACGTCGGCTTCGTGACGATGCTGTCCTCGGTCTTGACCGTGCCGGTCCTGGTC ATGGCGTGGGCCCCGCTGCCGAAACATGAGATGGCCTACAGCTCGGCGTCGCTGGCCCTGGCCACCATCGTCCAG ATCTTCGTCGCGGGACCCTTCTACCCCAAGGCGCTCAAGGCGCTCGTCTTCTCCCGCGTCATCGAAATGGACCTG CTCATCGTGCTCAGCACCAGCGCCGCCTACGTCTTCTCTACCGTCTCTTTTTCGAGACGAGCACGCTGCTCGTGA |
| Gene | >Hirsu2|7397 ATGCCGCGTCAGTGCCACTGCCGCCGCCGCCCCGGCTCCGGGCCAAGATGCAGACGCCTCTCTCACGCTCAAGCG CGTCCGAGCGGACAAAGCCAACGCCGTGCCCTCGGCAAGTGATGTTGAGAACCAGGCCGTTGGCAGCGAACACGT CGTCCTCTGCGTCTCCGGCATGACCTGCACCGGCTGCGAGACGAAGCTGAACCGGACCCTGGCGACGGTCCACGG CGTCGGGAGCCTGAAGACGAGCTTGGTTCTCTCGCGGGCCGAGTTCGACGTCGACCTCCGACTGGTCGCCGTCGC CGACGTCATAAAGCACCTGGAACGAACGACCGAGTTCAAGTGCGAGCGGATCGCCGACAGGGGATCGAGCTTGGA CGTCCTCGTCGCCGGAGACGGGACCAGCTTCGTCGACCGGCCGTGGCCCGAGGGGGTCATGGACATGAGTCTCGC CGACAAGGGCGTGGTGCGGATCACATTCGACCCGGCCATCGTCGGCGCCAGAGATCTCCTCACGACGCACCTGGG CCCCGACGTGAGACTTGCTCCCGTGTGCGCCGACGCTTCGCTCAAGGCCGGGGGCAAACACGTCCGCCACGTCGG CTTCGTGACGATGCTGTCCTCGGTCTTGACCGTGCCGGTCCTGGTCATGGCGTGGGCCCCGCTGCCGAAACATGA GATGGCCTACAGCTCGGCGTCGCTGGCCCTGGCCACCATCGTCCAGATCTTCGTCGCGGGACCCTTCTACCCCAA GGCGCTCAAGGCGCTCGTCTTCTCCCGCGTCATCGAAATGGACCTGCTCATCGTGCTCAGCACCAGCGCCGCCTA CGTCTTCTCTACCGTCTCGTTCGCCTATCTCGTCGCGGGCAGGCCGCTCTCGACCGGCCAGTTTTTCGAGACGAG CACGCTGCTCGTGA |