Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280

General Properties

Protein ID	Hirsu2|7394
Gene name
Location	Contig_429:7303..9987
Strand	-
Gene length (bp)	2684
Transcript length (bp)	2115
Coding sequence length (bp)	2115
Protein length (aa)	705

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04818	CTD_bind	RNA polymerase II-binding domain.	2.0E-09	47	124
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4.3E-06	475	521

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9UTE3|SEB1_SCHPO	Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seb1 PE=1 SV=3	8	606	3.0E-91
sp|P53617|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	453	619	3.0E-49
sp|P53617|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	8	149	2.0E-18

GO

GO Term	Description	Terminal node
GO:0003676	nucleic acid binding	Yes
GO:1901363	heterocyclic compound binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|7394 MLNLKPPGVSGSRITSLTSLCVSNIQSESVLIQKIYTHFKKAPGTHKLGVLYVVDSVTRKWLEQAKAQGQPVNSS AQDGTYAAGVHRVTELMPVLMNDILQSAPEEQKEKIKKLLDIWEKGQTFPAPMLESFRQKMSAPAPMADCFAFDP DASTTPPGSPPPGGPLAALQDRPQASTTPAAPNGSSILEALANMARQNTTASTNNKPVTPTPAAPFGLPTGAVPQ QPATSSVHQQALNALNPSAYPPASQPVNGSSLPFSLPQMAGQGAQQPAALAAATNAALNPYAAAASTPAATAGGL GLDSNTQQQIMLIKALADQGVPFDKIPALIQSMTGAASANAQAAFQPPVPAAQGTFSTAQQAWGANTAHGFQDGT RSPSRYQGRSRSRSPDRGWGSRGSPRNGGAHDGLDHNHHEERERGGRRGNGYRQRSPQGRRARSASPPSEFPHIE RWVEWDPTLPAGHIRVLSRTLFVGGVTCSEADLRKIFSRYGTVQTCIVNKEKRHAFVKMLTRKDAVHAKDSTEDT RNLELPLRTRWGVGYGPRDCSDYATGISVIPIHKLTEADRKWMLTAPYGGSGGRPIETGMCVEEPDIEIGAGVSS KAISRRMQTDKGGSNGPKSTRNREEESSGRGRRGRGRGEQADNGAASQQQQQQQQQQQQQQQQQQQAAAMSAFAP FGMNSLPNGIPNFPTGGYAFPNSGAGNGA*
Coding	>Hirsu2|7394 ATGCTCAACTTGAAACCTCCCGGAGTGTCGGGATCACGTATCACTAGCCTCACCTCACTCTGCGTCTCCAACATT CAGTCCGAGTCCGTCCTGATCCAAAAAATATACACTCACTTCAAGAAGGCGCCCGGGACGCACAAGTTGGGGGTA CTCTACGTAGTAGACTCTGTAACCCGGAAATGGCTCGAGCAAGCAAAGGCCCAAGGGCAGCCAGTAAACAGCTCT GCACAGGACGGCACGTATGCCGCCGGCGTACACCGAGTGACGGAACTGATGCCCGTTTTGATGAATGACATTCTT CAGTCTGCGCCCGAGGAGCAAAAGGAAAAGATCAAGAAGCTCCTTGACATCTGGGAGAAGGGCCAGACCTTCCCG GCGCCGATGCTCGAGTCCTTCCGCCAAAAAATGAGTGCTCCGGCCCCAATGGCTGACTGCTTCGCCTTCGACCCA GATGCTTCGACGACGCCCCCCGGCAGCCCTCCTCCCGGCGGCCCGCTGGCCGCCCTGCAAGACAGACCTCAGGCC TCGACCACGCCGGCGGCCCCGAACGGCTCGTCCATTCTTGAAGCGCTCGCCAACATGGCGCGCCAGAACACGACG GCGTCGACCAACAACAAGCCCGTCACGCCGACGCCCGCGGCGCCGTTCGGACTGCCGACCGGGGCCGTGCCACAG CAGCCGGCGACGTCTTCGGTCCATCAGCAGGCGCTCAATGCCCTGAACCCATCGGCGTACCCCCCCGCCTCGCAG CCGGTGAACGGCTCGTCCCTGCCCTTCTCGCTACCTCAGATGGCCGGTCAGGGCGCCCAGCAGCCGGCGGCGTTG GCCGCCGCGACGAATGCGGCTCTCAACCCATACGCCGCCGCCGCTTCGACGCCGGCCGCCACTGCCGGAGGACTC GGCCTCGACTCAAATACGCAGCAGCAGATCATGCTGATCAAGGCCCTCGCGGACCAGGGCGTGCCTTTCGACAAG ATACCCGCCCTGATCCAGAGCATGACTGGCGCCGCCAGCGCCAACGCGCAGGCCGCCTTTCAGCCGCCCGTGCCG GCCGCCCAAGGGACCTTCTCGACGGCGCAGCAGGCGTGGGGGGCGAACACGGCCCACGGCTTCCAAGACGGCACG AGATCGCCCAGCAGATACCAGGGACGCTCCCGATCCCGCTCTCCCGACCGCGGCTGGGGCTCACGCGGATCCCCT CGCAACGGGGGGGCGCATGACGGGCTCGACCACAACCATCACGAGGAGCGCGAGCGCGGCGGCCGCCGGGGCAAT GGCTACCGGCAGCGGAGCCCACAGGGGCGCCGGGCTCGCAGCGCCTCCCCACCGTCCGAGTTCCCCCATATAGAG AGATGGGTCGAGTGGGATCCAACGCTGCCGGCGGGCCACATCAGGGTGCTGAGCCGAACGCTCTTTGTTGGGGGA GTGACATGCAGCGAGGCGGACCTGCGCAAGATCTTCAGCCGTTACGGCACGGTTCAGACGTGCATCGTGAATAAG GAGAAGCGACACGCGTTTGTCAAGATGCTGACGCGCAAGGATGCGGTGCATGCCAAGGACAGCACGGAAGACACC AGGAACCTGGAGCTGCCTCTTCGGACACGCTGGGGCGTCGGCTACGGCCCTCGGGACTGCAGCGACTACGCGACG GGCATCAGCGTGATCCCGATCCACAAGCTTACCGAGGCGGACCGAAAGTGGATGCTGACGGCGCCCTACGGCGGC AGCGGAGGACGGCCGATCGAGACGGGCATGTGCGTCGAGGAGCCAGACATTGAGATAGGGGCCGGGGTGTCGTCC AAGGCGATCAGCCGGCGGATGCAGACGGACAAGGGCGGCAGCAACGGACCCAAGTCGACGCGGAATCGCGAGGAG GAGTCGTCGGGCCGGGGACGTCGCGGGCGAGGGCGCGGCGAGCAGGCAGACAACGGGGCGGCAAGCCAACAACAA CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCAGCGGCGATGTCGGCCTTTGCCCCC TTTGGCATGAACAGCCTGCCGAACGGCATCCCCAACTTCCCGACGGGGGGGTATGCGTTCCCGAACAGCGGTGCA GGAAACGGAGCGTGA
Transcript	>Hirsu2|7394 ATGCTCAACTTGAAACCTCCCGGAGTGTCGGGATCACGTATCACTAGCCTCACCTCACTCTGCGTCTCCAACATT CAGTCCGAGTCCGTCCTGATCCAAAAAATATACACTCACTTCAAGAAGGCGCCCGGGACGCACAAGTTGGGGGTA CTCTACGTAGTAGACTCTGTAACCCGGAAATGGCTCGAGCAAGCAAAGGCCCAAGGGCAGCCAGTAAACAGCTCT GCACAGGACGGCACGTATGCCGCCGGCGTACACCGAGTGACGGAACTGATGCCCGTTTTGATGAATGACATTCTT CAGTCTGCGCCCGAGGAGCAAAAGGAAAAGATCAAGAAGCTCCTTGACATCTGGGAGAAGGGCCAGACCTTCCCG GCGCCGATGCTCGAGTCCTTCCGCCAAAAAATGAGTGCTCCGGCCCCAATGGCTGACTGCTTCGCCTTCGACCCA GATGCTTCGACGACGCCCCCCGGCAGCCCTCCTCCCGGCGGCCCGCTGGCCGCCCTGCAAGACAGACCTCAGGCC TCGACCACGCCGGCGGCCCCGAACGGCTCGTCCATTCTTGAAGCGCTCGCCAACATGGCGCGCCAGAACACGACG GCGTCGACCAACAACAAGCCCGTCACGCCGACGCCCGCGGCGCCGTTCGGACTGCCGACCGGGGCCGTGCCACAG CAGCCGGCGACGTCTTCGGTCCATCAGCAGGCGCTCAATGCCCTGAACCCATCGGCGTACCCCCCCGCCTCGCAG CCGGTGAACGGCTCGTCCCTGCCCTTCTCGCTACCTCAGATGGCCGGTCAGGGCGCCCAGCAGCCGGCGGCGTTG GCCGCCGCGACGAATGCGGCTCTCAACCCATACGCCGCCGCCGCTTCGACGCCGGCCGCCACTGCCGGAGGACTC GGCCTCGACTCAAATACGCAGCAGCAGATCATGCTGATCAAGGCCCTCGCGGACCAGGGCGTGCCTTTCGACAAG ATACCCGCCCTGATCCAGAGCATGACTGGCGCCGCCAGCGCCAACGCGCAGGCCGCCTTTCAGCCGCCCGTGCCG GCCGCCCAAGGGACCTTCTCGACGGCGCAGCAGGCGTGGGGGGCGAACACGGCCCACGGCTTCCAAGACGGCACG AGATCGCCCAGCAGATACCAGGGACGCTCCCGATCCCGCTCTCCCGACCGCGGCTGGGGCTCACGCGGATCCCCT CGCAACGGGGGGGCGCATGACGGGCTCGACCACAACCATCACGAGGAGCGCGAGCGCGGCGGCCGCCGGGGCAAT GGCTACCGGCAGCGGAGCCCACAGGGGCGCCGGGCTCGCAGCGCCTCCCCACCGTCCGAGTTCCCCCATATAGAG AGATGGGTCGAGTGGGATCCAACGCTGCCGGCGGGCCACATCAGGGTGCTGAGCCGAACGCTCTTTGTTGGGGGA GTGACATGCAGCGAGGCGGACCTGCGCAAGATCTTCAGCCGTTACGGCACGGTTCAGACGTGCATCGTGAATAAG GAGAAGCGACACGCGTTTGTCAAGATGCTGACGCGCAAGGATGCGGTGCATGCCAAGGACAGCACGGAAGACACC AGGAACCTGGAGCTGCCTCTTCGGACACGCTGGGGCGTCGGCTACGGCCCTCGGGACTGCAGCGACTACGCGACG GGCATCAGCGTGATCCCGATCCACAAGCTTACCGAGGCGGACCGAAAGTGGATGCTGACGGCGCCCTACGGCGGC AGCGGAGGACGGCCGATCGAGACGGGCATGTGCGTCGAGGAGCCAGACATTGAGATAGGGGCCGGGGTGTCGTCC AAGGCGATCAGCCGGCGGATGCAGACGGACAAGGGCGGCAGCAACGGACCCAAGTCGACGCGGAATCGCGAGGAG GAGTCGTCGGGCCGGGGACGTCGCGGGCGAGGGCGCGGCGAGCAGGCAGACAACGGGGCGGCAAGCCAACAACAA CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCAGCGGCGATGTCGGCCTTTGCCCCC TTTGGCATGAACAGCCTGCCGAACGGCATCCCCAACTTCCCGACGGGGGGGTATGCGTTCCCGAACAGCGGTGCA GGAAACGGAGCGTGA
Gene	>Hirsu2|7394 ATGCTCAACTTGAAACCTCCCGGAGTGTCGGGATCACGTATCACTAGCCTCACCTCACTCTGCGTCTCCAACATT CAGGTATGCAACGTCCGCTTCGTCTTGCCGGCCGTCCGCCCCGCGCTGACCAACGGCCGTACAGTCCGAGTCCGT CCTGATCCAAAAAATATACACTCACTTCAAGAAGGCGCCCGGGACGCACAAGTTGGGGGTACTCTACGTAGTAGA CTCTGTAACCCGGAAATGGCTCGAGCAAGCAAAGGCCCAAGGGCAGCCAGTAAACAGCTCTGCACAGGACGGCAC GTATGCCGCCGGCGTACACCGAGTGACGGAACTGATGCCCGTTTTGATGAATGACATTCTTCAGTCTGCGCCCGA GGAGCAAAAGGTACGCATCTTATTTTCCGATGACCACACTCCCAGATGCTCTGCCTCGTAGCAGTATCCCTCTGT CGGCCGCTGGCCAGCCGCGTGCGACTCTTGGCCACGAAGACGTCTCTTCAACGCCGTCGTCGCCATCCTCGTGTC TCGCGCCCAGCCCTCGTGGGTCGGCGTCGCAATCGAGAGATGCAAGATGACCGACGCGACGCGCCAGTCAGCCCG TCATGGAACTCGTTCCCTCGTTGGCACACTAGCATCCATGTCCGGAGTACAGTGACTTACCAGACGACTCGCCGT GTAGGAAAAGATCAAGAAGCTCCTTGACATCTGGGAGAAGGGCCAGACCTTCCCGGCGCCGATGCTCGAGTCCTT CCGCCAAAAAATGAGTGCTCCGGCCCCAAGTATGTTGTCCTCGGCTCCTGTCCTCCCAGCTGCCTCGACCAGGCC CAGGCCGTGGTGCCGGTCGAGCCGCCGCGCGCCGTGTCCAGTGGCTGACTGCTTCGCCTTCGACCCAGATGCTTC GACGACGCCCCCCGGCAGCCCTCCTCCCGGCGGCCCGCTGGCCGCCCTGCAAGACAGACCTCAGGCCTCGACCAC GCCGGCGGCCCCGAACGGCTCGTCCATTCTTGAAGCGCTCGCCAACATGGCGCGCCAGAACACGACGGCGTCGAC CAACAACAAGCCCGTCACGCCGACGCCCGCGGCGCCGTTCGGACTGCCGACCGGGGCCGTGCCACAGCAGCCGGC GACGTCTTCGGTCCATCAGCAGGCGCTCAATGCCCTGAACCCATCGGCGTACCCCCCCGCCTCGCAGCCGGTGAA CGGCTCGTCCCTGCCCTTCTCGCTACCTCAGATGGCCGGTCAGGGCGCCCAGCAGCCGGCGGCGTTGGCCGCCGC GACGAATGCGGCTCTCAACCCATACGCCGCCGCCGCTTCGACGCCGGCCGCCACTGCCGGAGGACTCGGCCTCGA CTCAAATACGCAGCAGCAGATCATGCTGATCAAGGCCCTCGCGGACCAGGGCGTGCCTTTCGACAAGATACCCGC CCTGATCCAGAGCATGACTGGCGCCGCCAGCGCCAACGCGCAGGCCGCCTTTCAGCCGCCCGTGCCGGCCGCCCA AGGGACCTTCTCGACGGCGCAGCAGGCGTGGGGGGCGAACACGGCCCACGGCTTCCAAGACGGCACGAGATCGCC CAGCAGATACCAGGGACGCTCCCGATCCCGCTCTCCCGACCGCGGCTGGGGCTCACGCGGATCCCCTCGCAACGG GGGGGCGCATGACGGGCTCGACCACAACCATCACGAGGAGCGCGAGCGCGGCGGCCGCCGGGGCAATGGCTACCG GCAGCGGAGCCCACAGGGGCGCCGGGCTCGCAGCGCCTCCCCACCGTCCGAGTTCCCCCATATAGAGAGATGGGT CGAGTGGGATCCAACGCTGCCGGCGGGCCACATCAGGGTGCTGAGCCGAACGCTCTTTGTTGGGGGAGTGACGTG AGTATCCGGTCGTTGGCTTCCCCCTGCCGCGGACGAGCTGCTAACTAGGGCAACAGATGCAGCGAGGCGGACCTG CGCAAGATCTTCAGCCGTTACGGCACGGTTCAGACGTGCATCGTGAATAAGGAGAAGCGACACGCGTTTGTCAAG ATGCTGACGCGCAAGGATGCGGTGCATGCCAAGGACAGCACGGAAGACACCAGGAACCTGGAGCTGCCTCTTCGG GTGAGTCTTGTCGGGTTCGGCCGGGAGAGGGGGAGAGGGAGGACGAGTGCTAACGGCGAGCTCGACAGACACGCT GGGGCGTCGGCTACGGCCCTCGGGACTGCAGCGACTACGCGACGGGCATCAGCGTGATCCCGATCCACAAGCTTA CCGAGGCGGACCGAAAGTGGATGCTGACGGCGCCCTACGGCGGCAGCGGAGGACGGCCGATCGAGACGGGCATGT GCGTCGAGGAGCCAGACATTGAGATAGGGGCCGGGGTGTCGTCCAAGGCGATCAGCCGGCGGATGCAGACGGACA AGGGCGGCAGCAACGGACCCAAGTCGACGCGGAATCGCGAGGAGGAGTCGTCGGGCCGGGGACGTCGCGGGCGAG GGCGCGGCGAGCAGGCAGACAACGGGGCGGCAAGCCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGGCAGCGGCGATGTCGGCCTTTGCCCCCTTTGGCATGAACAGCCTGCCGAACGGCATCC CCAACTTCCCGACGGGGGGGTATGCGTTCCCGAACAGCGGTGCAGGAAACGGAGCGTGA