© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7375 |
| Gene name | |
| Location | Contig_426:332..1801 |
| Strand | - |
| Gene length (bp) | 1469 |
| Transcript length (bp) | 1239 |
| Coding sequence length (bp) | 1239 |
| Protein length (aa) | 413 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.0E-33 | 24 | 384 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 5.9E-07 | 47 | 166 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 11 | 366 | 5.0E-53 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 8 | 357 | 4.0E-38 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 11 | 381 | 4.0E-37 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 8 | 364 | 1.0E-34 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 18 | 221 | 4.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 11 | 366 | 5.0E-53 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 8 | 357 | 4.0E-38 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 11 | 381 | 4.0E-37 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 8 | 364 | 1.0E-34 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 18 | 221 | 4.0E-10 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 33 | 176 | 5.0E-10 |
| sp|Q0P5M9|MFS10_BOVIN | Major facilitator superfamily domain-containing protein 10 OS=Bos taurus GN=MFSD10 PE=2 SV=1 | 47 | 293 | 2.0E-09 |
| sp|P02981|TCR3_ECOLX | Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1 | 33 | 175 | 6.0E-09 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 18 | 175 | 2.0E-08 |
| sp|Q07282|TCR5_ECOLX | Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1 | 20 | 243 | 4.0E-08 |
| sp|P0A4K5|PMRA_STRR6 | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | 33 | 167 | 5.0E-08 |
| sp|P0A4K4|PMRA_STRPN | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | 33 | 167 | 5.0E-08 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 29 | 167 | 1.0E-07 |
| sp|Q14728|MFS10_HUMAN | Major facilitator superfamily domain-containing protein 10 OS=Homo sapiens GN=MFSD10 PE=1 SV=1 | 47 | 245 | 1.0E-07 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 6 | 166 | 1.0E-07 |
| sp|D8MQN9|MDTG_ERWBE | Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | 28 | 167 | 3.0E-07 |
| sp|Q5HHX4|NORA_STAAC | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|P0A0J6|NORA_STAAW | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|P0A0J7|NORA_STAAU | Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|P0A0J5|NORA_STAAN | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|P0A0J4|NORA_STAAM | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|Q6GBD5|NORA_STAAS | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | 33 | 176 | 3.0E-07 |
| sp|Q9D2V8|MFS10_MOUSE | Major facilitator superfamily domain-containing protein 10 OS=Mus musculus GN=Mfsd10 PE=1 SV=1 | 47 | 175 | 4.0E-07 |
| sp|Q6GIU7|NORA_STAAR | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | 33 | 176 | 6.0E-07 |
| sp|P58120|PMRA_LACLA | Multi-drug resistance efflux pump PmrA homolog OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=pmrA PE=3 SV=1 | 29 | 167 | 1.0E-06 |
| sp|A8GCZ5|MDTG_SERP5 | Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | 29 | 167 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 85 | 104 | 19 |
| 2 | 144 | 166 | 22 |
| 3 | 187 | 209 | 22 |
| 4 | 338 | 360 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7375 MTEASPSRPRLPVQQLAILVVVRLAEPLAYTSIYPYLPEMIRGFGVRQNEVAKWAGLTTAVFAISQGLAAVPWGR ASDRYGRKPVILCGLASTMVCFVAWGMSTSLPMAMAARAVQGAGNGNVAIIRTVVAEIVPVKELQPRAFSIMPLV WSVGSVIGPAFGGFLAQPAVKYPHLFGHIHFFQRFPYALPNLVATLFFLVSAAAAILFLQESLPSKRDEPDAGLE LGKRISRLFRRTRSPPSGRRPFADGEAALPSRLAEAQSKKARSPEPPPRVKEILTRQTSISLLTYTILCLHSVAF DQNITVFLNYPVVEHTPDNTKLPFYFTGGFGLESNRIGTLFAVYGITCGLIQFIIYPSLVRKYGILKCWNFCGPS SLPFISSLTHCPQQALPPLFPLDSEFMLSDRPADRRS* |
| Coding | >Hirsu2|7375 ATGACGGAGGCTTCGCCGTCGAGGCCCAGGCTGCCCGTCCAGCAGCTGGCCATCCTCGTCGTCGTGCGGCTCGCC GAGCCCCTGGCTTACACCTCCATCTACCCCTACCTGCCCGAGATGATCCGGGGCTTCGGCGTGCGGCAGAACGAG GTGGCCAAGTGGGCCGGCCTCACCACCGCCGTCTTCGCCATCTCCCAGGGCCTGGCCGCCGTCCCCTGGGGCCGC GCCTCGGACCGCTACGGCCGGAAGCCCGTCATCCTGTGCGGCCTGGCCAGCACCATGGTCTGCTTCGTCGCCTGG GGCATGTCCACCAGCCTGCCCATGGCCATGGCCGCCCGCGCCGTCCAGGGCGCCGGCAACGGGAACGTCGCCATC ATCCGCACCGTCGTCGCCGAGATCGTCCCGGTCAAGGAGCTGCAGCCGCGCGCCTTTTCCATCATGCCCCTGGTC TGGTCCGTCGGCTCCGTCATCGGCCCGGCCTTCGGCGGCTTCCTGGCCCAGCCGGCCGTCAAGTACCCTCACCTC TTCGGCCACATCCACTTCTTCCAGCGCTTCCCCTACGCCCTGCCCAACCTCGTCGCCACCCTCTTCTTCCTCGTC TCCGCCGCTGCCGCCATCCTCTTCCTTCAGGAATCGCTGCCGAGCAAGCGCGACGAGCCCGACGCCGGCCTGGAG CTGGGGAAGCGCATCTCGCGCCTCTTCCGCCGCACGAGGTCGCCGCCGTCTGGCCGGCGGCCGTTCGCTGACGGA GAGGCCGCCCTGCCGTCGCGTCTGGCCGAGGCGCAGTCGAAAAAGGCGCGGTCGCCGGAGCCGCCGCCGAGGGTC AAGGAGATCCTGACGCGCCAGACGTCCATCAGCCTGCTGACCTACACCATCCTGTGCCTGCACTCGGTCGCCTTC GACCAGAACATCACCGTCTTCCTCAACTACCCCGTCGTCGAGCACACGCCCGACAACACCAAGCTCCCCTTCTAC TTCACCGGCGGCTTCGGCCTCGAGTCCAACCGGATCGGCACCCTCTTCGCCGTCTACGGCATCACCTGCGGCCTC ATCCAGTTCATCATCTACCCGTCCCTGGTCAGGAAGTACGGCATTCTCAAGTGCTGGAATTTCTGCGGTCCGTCT TCTCTCCCCTTCATCTCCTCCCTCACCCACTGCCCACAGCAGGCCCTCCCCCCCCTATTCCCGCTCGATTCCGAG TTCATGCTATCCGATCGGCCCGCTGACCGGCGGAGCTGA |
| Transcript | >Hirsu2|7375 ATGACGGAGGCTTCGCCGTCGAGGCCCAGGCTGCCCGTCCAGCAGCTGGCCATCCTCGTCGTCGTGCGGCTCGCC GAGCCCCTGGCTTACACCTCCATCTACCCCTACCTGCCCGAGATGATCCGGGGCTTCGGCGTGCGGCAGAACGAG GTGGCCAAGTGGGCCGGCCTCACCACCGCCGTCTTCGCCATCTCCCAGGGCCTGGCCGCCGTCCCCTGGGGCCGC GCCTCGGACCGCTACGGCCGGAAGCCCGTCATCCTGTGCGGCCTGGCCAGCACCATGGTCTGCTTCGTCGCCTGG GGCATGTCCACCAGCCTGCCCATGGCCATGGCCGCCCGCGCCGTCCAGGGCGCCGGCAACGGGAACGTCGCCATC ATCCGCACCGTCGTCGCCGAGATCGTCCCGGTCAAGGAGCTGCAGCCGCGCGCCTTTTCCATCATGCCCCTGGTC TGGTCCGTCGGCTCCGTCATCGGCCCGGCCTTCGGCGGCTTCCTGGCCCAGCCGGCCGTCAAGTACCCTCACCTC TTCGGCCACATCCACTTCTTCCAGCGCTTCCCCTACGCCCTGCCCAACCTCGTCGCCACCCTCTTCTTCCTCGTC TCCGCCGCTGCCGCCATCCTCTTCCTTCAGGAATCGCTGCCGAGCAAGCGCGACGAGCCCGACGCCGGCCTGGAG CTGGGGAAGCGCATCTCGCGCCTCTTCCGCCGCACGAGGTCGCCGCCGTCTGGCCGGCGGCCGTTCGCTGACGGA GAGGCCGCCCTGCCGTCGCGTCTGGCCGAGGCGCAGTCGAAAAAGGCGCGGTCGCCGGAGCCGCCGCCGAGGGTC AAGGAGATCCTGACGCGCCAGACGTCCATCAGCCTGCTGACCTACACCATCCTGTGCCTGCACTCGGTCGCCTTC GACCAGAACATCACCGTCTTCCTCAACTACCCCGTCGTCGAGCACACGCCCGACAACACCAAGCTCCCCTTCTAC TTCACCGGCGGCTTCGGCCTCGAGTCCAACCGGATCGGCACCCTCTTCGCCGTCTACGGCATCACCTGCGGCCTC ATCCAGTTCATCATCTACCCGTCCCTGGTCAGGAAGTACGGCATTCTCAAGTGCTGGAATTTCTGCGGTCCGTCT TCTCTCCCCTTCATCTCCTCCCTCACCCACTGCCCACAGCAGGCCCTCCCCCCCCTATTCCCGCTCGATTCCGAG TTCATGCTATCCGATCGGCCCGCTGACCGGCGGAGCTGA |
| Gene | >Hirsu2|7375 ATGACGGAGGCTTCGCCGTCGAGGCCCAGGCTGCCCGTCCAGCAGCTGGCCATCCTCGGCAAGTCTGCCCGCGGG AACAGGCCCTCCGCTGTCCTGTCGTCCTTCTTCCTCGCCATTCCCGCGCTGGTTGCTGACGTCTCTCGGCCGACA GTCGTCGTGCGGCTCGCCGAGCCCCTGGCTTACACCTCCATCTACCCCTACCTGCCCGAGATGATCCGGGGCTTC GGCGTGCGGCAGAACGAGGTGGCCAAGTGGGCCGGCCTCACCACCGCCGTCTTCGCCATCTCCCAGGGCCTGGCC GCCGTCCCCTGGGGCCGCGCCTCGGACCGCTACGGCCGGAAGCCCGTCATCCTGTGCGGCCTGGCCAGCACCATG GTCTGCTTCGTCGCCTGGGGCATGTCCACCAGCCTGCCCATGGCCATGGCCGCCCGCGCCGTCCAGGGCGCCGGC AACGGGAACGGTGCCCTCTCCTTTGCATTCCTCCTCCTCCTCTAGCAACGGCCGTGGCCGCTGACCGCCCGCAGT CGCCATCATCCGCACCGTCGTCGCCGAGATCGTCCCGGTCAAGGAGCTGCAGCCGCGCGCCTTTTCCATCATGCC CCTGGTCTGGTCCGTCGGCTCCGTCATCGGCCCGGCCTTCGGCGGCTTCCTGGCCCAGCCGGCCGTCAAGTACCC TCACCTCTTCGGCCACATCCACTTCTTCCAGCGCTTCCCCTACGCCCTGCCCAACCTCGTCGCCACCCTCTTCTT CCTCGTCTCCGCCGCTGCCGCCATCCTCTTCCTTCAGGTACACCGCTCTCCNNNNCCCCCCTTTTTTTTTTCTTC GGCCCGCACCAGCCACCTGACCGGATCCTGTCCAGGAATCGCTGCCGAGCAAGCGCGACGAGCCCGACGCCGGCC TGGAGCTGGGGAAGCGCATCTCGCGCCTCTTCCGCCGCACGAGGTCGCCGCCGTCTGGCCGGCGGCCGTTCGCTG ACGGAGAGGCCGCCCTGCCGTCGCGTCTGGCCGAGGCGCAGTCGAAAAAGGCGCGGTCGCCGGAGCCGCCGCCGA GGGTCAAGGAGATCCTGACGCGCCAGACGTCCATCAGCCTGCTGACCTACACCATCCTGTGCCTGCACTCGGTCG CCTTCGACCAGAACATCACCGTCTTCCTCAACTACCCCGTCGTCGAGCACACGCCCGACAACACCAAGCTCCCCT TCTACTTCACCGGCGGCTTCGGCCTCGAGTCCAACCGGATCGGCACCCTCTTCGCCGTCTACGGCATCACCTGCG GCCTCATCCAGTTCATCATCTACCCGTCCCTGGTCAGGAAGTACGGCATTCTCAAGTGCTGGAATTTCTGCGGTC CGTCTTCTCTCCCCTTCATCTCCTCCCTCACCCACTGCCCACAGCAGGCCCTCCCCCCCCTATTCCCGCTCGATT CCGAGTTCATGCTATCCGATCGGCCCGCTGACCGGCGGAGCTGA |