Protein ID | Hirsu2|7346 |
Gene name | |
Location | Contig_421:10143..11336 |
Strand | - |
Gene length (bp) | 1193 |
Transcript length (bp) | 1065 |
Coding sequence length (bp) | 1065 |
Protein length (aa) | 355 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 1.2E-02 | 281 | 297 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.4666 | 0.6912 | 0.1183 | 0.0471 | 0.1238 | 0.0129 | 0.0845 | 0.0671 | 0.0732 | 0.0056 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Orthofinder run ID | 4 |
Orthogroup | 3767 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7346 MPSGLQSNGQWLCQPCNELFDSWEALLAHKRTIRSSKVRNHIHCKHCGQDFKTGQAEFEHIKQFHPQDQQLVCPG CGQGPFARVSGLMGHIEGGQCSGLDIAVLDERREQRTEFSRRLQDFTDQPVRNNFTKYMAAPRTLGSTWLPKPED GVPAAASPSGSAEDEAKPAIDAATADWGARDDLPSGETKREEGEEDGWAKWNSLTTAAAAVPMAAGLASDAKLIT SMDVEHPDHPSFSAMKYYSPYIEQFTCPKLPCGKTFKKAGGLISHLRSEAHGNRTYRCPSCNRAFKSLKAIVSHA EQSSARCQVRESDNYVAFMDQLTAGVVDVSETPHDDGTIRYVSSGKSAGTTTDV* |
Coding | >Hirsu2|7346 ATGCCTTCTGGCCTGCAGAGCAACGGCCAGTGGCTCTGCCAGCCGTGCAACGAGCTTTTCGACAGCTGGGAGGCC CTGCTGGCCCACAAGCGGACGATACGCTCGTCCAAAGTTCGCAATCACATCCACTGCAAGCACTGCGGCCAGGAC TTCAAGACGGGCCAGGCCGAGTTTGAACACATCAAACAGTTTCATCCCCAGGACCAGCAGCTCGTGTGTCCCGGC TGCGGTCAAGGCCCCTTTGCCCGCGTGAGCGGCCTGATGGGCCACATCGAGGGAGGCCAGTGCTCCGGGCTCGAC ATCGCCGTCCTCGACGAGCGGCGAGAGCAGCGAACCGAGTTCTCGAGAAGGCTGCAGGACTTTACGGACCAGCCG GTTCGCAACAACTTCACCAAATACATGGCCGCTCCGCGCACACTCGGCTCCACCTGGCTCCCCAAGCCGGAGGAC GGCGTCCCCGCCGCGGCCTCTCCGTCCGGATCTGCTGAGGACGAGGCGAAGCCGGCCATAGATGCGGCAACGGCA GACTGGGGCGCGAGGGACGATTTGCCGTCGGGGGAGACGAAGCGCGAAGAAGGGGAAGAGGACGGCTGGGCCAAG TGGAACAGCCTCACGACGGCGGCGGCGGCGGTGCCGATGGCGGCGGGCTTGGCCTCTGACGCGAAGCTCATCACG TCCATGGACGTGGAGCACCCGGACCACCCGTCGTTCAGTGCGATGAAGTACTACTCGCCCTACATCGAACAGTTC ACCTGCCCCAAGCTGCCGTGCGGCAAGACGTTCAAGAAGGCGGGCGGCCTGATCAGCCACCTCCGGTCCGAGGCG CACGGAAACAGGACGTACCGGTGCCCGTCGTGCAACCGAGCGTTCAAGTCGCTCAAGGCCATCGTGTCCCACGCG GAGCAGAGCAGCGCGCGGTGCCAGGTGCGCGAGTCGGACAACTACGTCGCCTTCATGGACCAGCTGACGGCCGGC GTCGTCGACGTGTCGGAGACGCCCCACGACGACGGCACGATCCGATACGTGTCGTCGGGCAAGAGTGCCGGGACG ACGACGGATGTGTAA |
Transcript | >Hirsu2|7346 ATGCCTTCTGGCCTGCAGAGCAACGGCCAGTGGCTCTGCCAGCCGTGCAACGAGCTTTTCGACAGCTGGGAGGCC CTGCTGGCCCACAAGCGGACGATACGCTCGTCCAAAGTTCGCAATCACATCCACTGCAAGCACTGCGGCCAGGAC TTCAAGACGGGCCAGGCCGAGTTTGAACACATCAAACAGTTTCATCCCCAGGACCAGCAGCTCGTGTGTCCCGGC TGCGGTCAAGGCCCCTTTGCCCGCGTGAGCGGCCTGATGGGCCACATCGAGGGAGGCCAGTGCTCCGGGCTCGAC ATCGCCGTCCTCGACGAGCGGCGAGAGCAGCGAACCGAGTTCTCGAGAAGGCTGCAGGACTTTACGGACCAGCCG GTTCGCAACAACTTCACCAAATACATGGCCGCTCCGCGCACACTCGGCTCCACCTGGCTCCCCAAGCCGGAGGAC GGCGTCCCCGCCGCGGCCTCTCCGTCCGGATCTGCTGAGGACGAGGCGAAGCCGGCCATAGATGCGGCAACGGCA GACTGGGGCGCGAGGGACGATTTGCCGTCGGGGGAGACGAAGCGCGAAGAAGGGGAAGAGGACGGCTGGGCCAAG TGGAACAGCCTCACGACGGCGGCGGCGGCGGTGCCGATGGCGGCGGGCTTGGCCTCTGACGCGAAGCTCATCACG TCCATGGACGTGGAGCACCCGGACCACCCGTCGTTCAGTGCGATGAAGTACTACTCGCCCTACATCGAACAGTTC ACCTGCCCCAAGCTGCCGTGCGGCAAGACGTTCAAGAAGGCGGGCGGCCTGATCAGCCACCTCCGGTCCGAGGCG CACGGAAACAGGACGTACCGGTGCCCGTCGTGCAACCGAGCGTTCAAGTCGCTCAAGGCCATCGTGTCCCACGCG GAGCAGAGCAGCGCGCGGTGCCAGGTGCGCGAGTCGGACAACTACGTCGCCTTCATGGACCAGCTGACGGCCGGC GTCGTCGACGTGTCGGAGACGCCCCACGACGACGGCACGATCCGATACGTGTCGTCGGGCAAGAGTGCCGGGACG ACGACGGATGTGTAA |
Gene | >Hirsu2|7346 ATGCCTTCTGGCCTGCAGAGCAACGGCCAGTGGCTCTGCCAGCCGTGCAACGAGCTTTTCGACAGCTGGGAGGCC CTGCTGGCCCACAAGCGGACGATACGCTCGTCCAAAGTTCGCAATCACATCCACTGCAAGCACTGCGGCCAGGAC TTCAAGACGGGCCAGGCCGAGTTTGAACACATCAAACAGGTGAGCGTGCTCCCTCTTCCTCTTTTTCCCTCTCCG GTCCGCATGGCTCAGTGTGCGCGGCAGTTTCATCCCCAGGACCAGCAGCTCGTGTGTCCCGGCTGCGGTCAAGGC CCCTTTGCCCGCGTGAGCGGCCTGATGGGCCACATCGAGGGAGGCCAGTGCTCCGGGCTCGACATCGCCGTCCTC GACGAGCGGCGAGAGCAGCGAACCGAGTTCTCGAGAAGGCTGCAGGACTTTACGGACCAGCCGGTTCGCAACAAC TTCACCAAATACATGGCCGCTCCGCGCACACTCGGCTCCACCTGGCTCCCCAAGCCGGAGGACGGCGTCCCCGCC GCGGCCTCTCCGTCCGGATCTGCTGAGGACGAGGCGAAGCCGGCCATAGATGCGGCAACGGCAGACTGGGGCGCG AGGGACGATTTGCCGTCGGGGGAGACGAAGCGCGAAGAAGGGGAAGAGGACGGCTGGGCCAAGTGGAACAGCCTC ACGACGGCGGCGGCGGCGGTGCCGATGGCGGCGGGCTTGGCCTCTGACGCGAAGCTCATCACGTCCATGGACGTG GAGCACCCGGACCACCCGTCGTTCAGTGCGATGAAGTACTACTCGCCCTACATCGAACAGTTCACCTGCCCCAAG CTGCCGTGCGGGTGAGTGCGGCCCCGGCCCCGAGCAGAGAGCTTGACCGGGTCGGCATCGCTGACGCGTGCGACA GCAAGACGTTCAAGAAGGCGGGCGGCCTGATCAGCCACCTCCGGTCCGAGGCGCACGGAAACAGGACGTACCGGT GCCCGTCGTGCAACCGAGCGTTCAAGTCGCTCAAGGCCATCGTGTCCCACGCGGAGCAGAGCAGCGCGCGGTGCC AGGTGCGCGAGTCGGACAACTACGTCGCCTTCATGGACCAGCTGACGGCCGGCGTCGTCGACGTGTCGGAGACGC CCCACGACGACGGCACGATCCGATACGTGTCGTCGGGCAAGAGTGCCGGGACGACGACGGATGTGTAA |