© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7334 |
| Gene name | |
| Location | Contig_42:43655..44578 |
| Strand | + |
| Gene length (bp) | 923 |
| Transcript length (bp) | 783 |
| Coding sequence length (bp) | 783 |
| Protein length (aa) | 261 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 2.7E-17 | 76 | 193 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59668|FAD12_MORIS | Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1 | 26 | 256 | 5.0E-37 |
| sp|Q9Y8H5|FAD12_MORAP | Delta(12) fatty acid desaturase OS=Mortierella alpina PE=1 SV=2 | 3 | 256 | 6.0E-37 |
| sp|Q6RS95|FAD21_DIMSI | Acyl-lipid (9+3)-(E)-desaturase OS=Dimorphotheca sinuata PE=1 SV=1 | 6 | 255 | 1.0E-35 |
| sp|P48630|FD6E1_SOYBN | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1 | 15 | 255 | 7.0E-35 |
| sp|P46313|FAD6E_ARATH | Delta(12)-fatty-acid desaturase OS=Arabidopsis thaliana GN=FAD2 PE=1 SV=1 | 2 | 254 | 9.0E-35 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P59668|FAD12_MORIS | Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1 | 26 | 256 | 5.0E-37 |
| sp|Q9Y8H5|FAD12_MORAP | Delta(12) fatty acid desaturase OS=Mortierella alpina PE=1 SV=2 | 3 | 256 | 6.0E-37 |
| sp|Q6RS95|FAD21_DIMSI | Acyl-lipid (9+3)-(E)-desaturase OS=Dimorphotheca sinuata PE=1 SV=1 | 6 | 255 | 1.0E-35 |
| sp|P48630|FD6E1_SOYBN | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1 | 15 | 255 | 7.0E-35 |
| sp|P46313|FAD6E_ARATH | Delta(12)-fatty-acid desaturase OS=Arabidopsis thaliana GN=FAD2 PE=1 SV=1 | 2 | 254 | 9.0E-35 |
| sp|P48631|FD6E2_SOYBN | Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1 | 26 | 251 | 1.0E-34 |
| sp|A3F5L3|DES2_SORBI | Fatty acid desaturase DES2 OS=Sorghum bicolor GN=DES2 PE=2 SV=1 | 29 | 256 | 3.0E-34 |
| sp|Q84VT2|FAD12_PUNGR | Delta(12)-acyl-lipid-desaturase OS=Punica granatum GN=FAD12 PE=2 SV=2 | 26 | 254 | 6.0E-34 |
| sp|Q8GZC3|FAD2_VERFO | Delta(12)-fatty-acid desaturase FAD2 OS=Vernicia fordii GN=FAD2 PE=1 SV=1 | 7 | 254 | 4.0E-33 |
| sp|Q6RS96|FAD22_DIMSI | Delta(9) fatty acid conjugase-like enzyme OS=Dimorphotheca sinuata PE=2 SV=1 | 1 | 253 | 9.0E-33 |
| sp|Q39287|FAD6E_BRAJU | Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1 | 29 | 254 | 9.0E-33 |
| sp|D2CPE1|FH12M_RICCO | Phosphatidylcholine 12-monooxygenase OS=Ricinus communis GN=FAH12 PE=2 SV=1 | 26 | 253 | 6.0E-32 |
| sp|Q41131|FH12_RICCO | Phosphatidylcholine 12-monooxygenase OS=Ricinus communis GN=FAH12 PE=1 SV=1 | 26 | 253 | 8.0E-32 |
| sp|O81931|FAD12_CREAL | Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=1 SV=2 | 26 | 249 | 1.0E-31 |
| sp|Q84UB8|FADX_PUNGR | Bifunctional fatty acid conjugase/Delta(12)-oleate desaturase OS=Punica granatum GN=FADX PE=1 SV=1 | 6 | 255 | 2.0E-31 |
| sp|Q8GZC2|FADX_VERFO | Bifunctional desaturase/conjugase FADX OS=Vernicia fordii PE=1 SV=1 | 26 | 251 | 3.0E-31 |
| sp|Q84UC0|FADX_TRIKI | Bifunctional fatty acid conjugase/Delta(12)-oleate desaturase OS=Trichosanthes kirilowii GN=FAC PE=2 SV=1 | 26 | 251 | 6.0E-31 |
| sp|Q84UB9|FAD12_TRIKI | Delta(12)-oleate desaturase OS=Trichosanthes kirilowii GN=FAD2 PE=2 SV=1 | 26 | 251 | 4.0E-29 |
| sp|Q9SP62|FADX_IMPBA | Delta(12) acyl-lipid conjugase (11E,13E-forming) OS=Impatiens balsamina GN=FADX PE=1 SV=1 | 26 | 253 | 1.0E-28 |
| sp|Q9SP61|FADX_MOMCH | Delta(12) acyl-lipid conjugase (11E,13E-forming) OS=Momordica charantia GN=FADX PE=1 SV=1 | 26 | 243 | 1.0E-27 |
| sp|P48626|FAD3E_TOBAC | Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1 | 26 | 249 | 5.0E-25 |
| sp|P32291|FAD3E_VIGRR | Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Vigna radiata var. radiata GN=ARG1 PE=2 SV=1 | 26 | 238 | 1.0E-23 |
| sp|P48619|FAD3C_RICCO | Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1 | 26 | 249 | 7.0E-22 |
| sp|P48618|FAD3C_BRANA | Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1 | 2 | 256 | 1.0E-21 |
| sp|P48622|FAD3D_ARATH | Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1 | 4 | 249 | 2.0E-21 |
| sp|P48620|FAD3C_SESIN | Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1 | 26 | 249 | 3.0E-21 |
| sp|Q9NEQ0|FAT1_CAEEL | Omega-3 fatty acid desaturase fat-1 OS=Caenorhabditis elegans GN=fat-1 PE=2 SV=1 | 12 | 147 | 9.0E-21 |
| sp|P48624|FAD3E_BRANA | Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1 | 15 | 249 | 9.0E-21 |
| sp|P48625|FAD3E_SOYBN | Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1 | 26 | 238 | 1.0E-20 |
| sp|P46310|FAD3C_ARATH | Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=2 SV=1 | 25 | 249 | 2.0E-20 |
| sp|P48623|FAD3E_ARATH | Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1 | 12 | 249 | 6.0E-19 |
| sp|A3F5L2|DES1_SORBI | Probable fatty acid desaturase DES1 OS=Sorghum bicolor GN=DES1 PE=2 SV=1 | 29 | 249 | 2.0E-18 |
| sp|G5EGA5|FAT2_CAEEL | Delta(12) fatty acid desaturase fat-2 OS=Caenorhabditis elegans GN=fat-2 PE=2 SV=1 | 24 | 147 | 1.0E-16 |
| sp|Q594P3|DES3_SORBI | Fatty acid desaturase DES3 OS=Sorghum bicolor GN=DES3 PE=1 SV=1 | 29 | 249 | 3.0E-16 |
| sp|P48621|FAD3C_SOYBN | Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1 | 25 | 249 | 1.0E-15 |
| sp|Q54794|DESA_ARTPT | Delta(12)-fatty-acid desaturase OS=Arthrospira platensis GN=desA PE=1 SV=1 | 76 | 154 | 1.0E-08 |
| sp|P20388|DESA_SYNY3 | Delta(12)-fatty-acid desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=desA PE=1 SV=1 | 14 | 171 | 2.0E-07 |
| sp|P48629|FAD6C_SPIOL | Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1 | 54 | 152 | 1.0E-06 |
| sp|P48628|FAD6C_SOYBN | Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1 | 17 | 152 | 3.0E-06 |
| sp|P46312|FAD6C_ARATH | Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2 | 58 | 152 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 76 | 98 | 22 |
| 3 | 111 | 130 | 19 |
| 4 | 185 | 207 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7334 MASSPQEPALFRPPPNGQPRVAAPDLQALRRAIPQHCFRPSIAVSLRHIALDLSFALLLLAVTLYLPGAEPSPLR WALLLAFSFLQGLVFMGLWVLGHECGHGALFPSRRLNDFFGFTLHSILLVPYFSFKYSHARHHRYTNHIDKDTVF VPSRGSVDALHWQIVRLHRALGFAHDSPFVSLLQLLSQQLFAVPMYFLFYLSGGAGSGTEKPKFLFKSHFNPKSG LFSPSEQPYILLSDAGVLLLLAALWKASSVLPSRI* |
| Coding | >Hirsu2|7334 ATGGCATCGTCACCGCAAGAGCCTGCCTTGTTTCGTCCGCCGCCGAACGGACAGCCTCGCGTGGCCGCCCCCGAC CTGCAGGCGCTTCGCCGGGCCATTCCACAGCACTGCTTCCGCCCAAGTATAGCCGTGTCTCTGCGGCACATCGCC CTTGACCTCTCCTTTGCTCTACTCCTGCTCGCCGTGACGCTCTACCTGCCCGGCGCCGAGCCGTCACCCCTCCGC TGGGCCTTGCTGTTAGCCTTTAGCTTTCTCCAGGGCCTAGTATTTATGGGCCTTTGGGTTCTGGGCCACGAATGT GGCCACGGAGCCCTGTTCCCCTCGCGCAGACTCAACGACTTCTTCGGCTTCACCTTGCATAGTATCCTCCTCGTT CCCTACTTCTCCTTTAAGTATAGTCACGCACGCCACCACCGCTACACAAACCACATTGACAAGGACACCGTCTTT GTGCCCAGCCGGGGAAGCGTCGATGCGCTGCACTGGCAAATCGTGAGGCTTCACAGGGCCTTGGGCTTCGCCCAC GACAGTCCCTTCGTCAGTCTCCTTCAGCTCCTGAGCCAGCAACTGTTCGCTGTGCCCATGTATTTCCTCTTCTAC TTGAGTGGCGGCGCCGGCAGCGGCACTGAGAAGCCCAAGTTCCTGTTCAAAAGCCACTTCAACCCCAAAAGTGGC CTGTTCTCACCGTCTGAGCAACCATACATCCTGCTGTCAGATGCCGGCGTCTTGCTCCTGCTCGCGGCGCTTTGG AAAGCCTCGTCGGTTCTGCCATCTCGTATATGA |
| Transcript | >Hirsu2|7334 ATGGCATCGTCACCGCAAGAGCCTGCCTTGTTTCGTCCGCCGCCGAACGGACAGCCTCGCGTGGCCGCCCCCGAC CTGCAGGCGCTTCGCCGGGCCATTCCACAGCACTGCTTCCGCCCAAGTATAGCCGTGTCTCTGCGGCACATCGCC CTTGACCTCTCCTTTGCTCTACTCCTGCTCGCCGTGACGCTCTACCTGCCCGGCGCCGAGCCGTCACCCCTCCGC TGGGCCTTGCTGTTAGCCTTTAGCTTTCTCCAGGGCCTAGTATTTATGGGCCTTTGGGTTCTGGGCCACGAATGT GGCCACGGAGCCCTGTTCCCCTCGCGCAGACTCAACGACTTCTTCGGCTTCACCTTGCATAGTATCCTCCTCGTT CCCTACTTCTCCTTTAAGTATAGTCACGCACGCCACCACCGCTACACAAACCACATTGACAAGGACACCGTCTTT GTGCCCAGCCGGGGAAGCGTCGATGCGCTGCACTGGCAAATCGTGAGGCTTCACAGGGCCTTGGGCTTCGCCCAC GACAGTCCCTTCGTCAGTCTCCTTCAGCTCCTGAGCCAGCAACTGTTCGCTGTGCCCATGTATTTCCTCTTCTAC TTGAGTGGCGGCGCCGGCAGCGGCACTGAGAAGCCCAAGTTCCTGTTCAAAAGCCACTTCAACCCCAAAAGTGGC CTGTTCTCACCGTCTGAGCAACCATACATCCTGCTGTCAGATGCCGGCGTCTTGCTCCTGCTCGCGGCGCTTTGG AAAGCCTCGTCGGTTCTGCCATCTCGTATATGA |
| Gene | >Hirsu2|7334 ATGGCATCGTCACCGCAAGAGCCTGCCTTGTTTCGTCCGCCGCCGAACGGACAGCCTCGCGTGGCCGCCCCCGAC CTGCAGGCGCTTCGCCGGGCCATTCCACAGCACTGCTTCCGCCCAAGTATAGCCGTGTCTCTGCGGCACATCGCC CTTGACCTCTCCTTTGCTCTACTCCTGCTCGCCGTGACGCTCTACCTGCCCGGCGCCGAGCCGTCACCCCTCCGC TGGGCCTTGCTGTTAGCCTTTAGCTTTCTCCAGGGCCTAGTATTTATGGGCCTTTGGGTTCTGGGCCACGAATGT GGCCACGGAGCCCTGTTCCCCTCGCGCAGACTCAACGACTTCTTCGGCTTCACCTTGCATAGTATCCTCCTCGTT CCCTACTTCTCCTTTAAGTATAGTCACGCACGCCACCACCGCTACACAAACCACATTGACAAGGACACCGTCTTT GTGCCCAGCCGGGGAAGCGTCGATGCGCTGCACTGGCAAATCGTGAGGCTTCACAGGGCCTTGGGCTTCGCCCAC GACAGTCCCTTCGTCAGTCTCCTTCAGCTCCTGAGCCAGCAACTGTTCGCTGTGCCCATGTATTTCCTCTTCTAC TTGAGTGGCGGCGCCGGCAGCGGCACTGAGAAGCCCAAGTTCCTGTTCAAAAGCCACTTCAACCCCAAAAGTGGC CTGTTCTCACCGTCTGAGCAACCATACATCCTGCTGTCAGATGCCGGCGTCTTGCTCCTGCTCGCGGCGCTTTGG AAAGCCTCGTCGGTTGTAGGCTTCTCCACTATTGTTTGGGCTTACGGCCTTCCCTATTTCTGGATGAACCATTGG CTTGGTACGTTCAATGTTCTATCCGGTCTCAACATCGTTGTCGTCATATTCATTTTCGTTGACGATTCTTTGTTC CGCAGCTGCCATCTCGTATATGA |