© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7316 |
| Gene name | |
| Location | Contig_419:4494..6536 |
| Strand | + |
| Gene length (bp) | 2042 |
| Transcript length (bp) | 1845 |
| Coding sequence length (bp) | 1845 |
| Protein length (aa) | 615 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01424 | R3H | R3H domain | 2.6E-09 | 327 | 380 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-04 | 182 | 252 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09868|CIP2_SCHPO | RNA-binding post-transcriptional regulator cip2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip2 PE=1 SV=1 | 175 | 378 | 5.0E-50 |
| sp|P34217|PIN4_YEAST | RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIN4 PE=1 SV=1 | 175 | 283 | 1.0E-38 |
| sp|O42923|CIP1_SCHPO | RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip1 PE=1 SV=1 | 174 | 378 | 7.0E-38 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.7566 | 0.3519 | 0.0794 | 0.0757 | 0.0817 | 0.0004 | 0.0896 | 0.037 | 0.0231 | 0.0036 |
| Orthofinder run ID | 4 |
| Orthogroup | 3753 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7316 MSQQPHDLGYLDYSSPANRSPGSSRQNYGGGAFASGLSLPRQTQRPFDAPLGSSALYPTDRITGAFNPRAMENMT LAAGMHGGYMLDNGANWSYNASGVATVNGNIHGPNRQRSVNRRAALPQNWTDHAAMSMPATLQPFPTSLNGGHLS NGGLRVDQGPSHTSPDLRSTASDGDQLIPTAIVIKNIPFAVRKETLTSIMLEMNLPQPYAFNYHFDNGVFRGLAF ANFQSAEDTRVVIDAMNGMDVHGRKLRVEYKKMLPEAERERIEREKRERRGQLEEQHRAPMLHNQSSLQSLGGMS QTQQRAPAGHLGDVDLNDPQTLEFYTELVMFKRDDTREVLVFPPSIIPEHRRSIHILAHHMGLEHQSMGEADSRQ LTVLKRQQPSPTTNVQNAAVANSLDMHKRGLSRAATFDFAADRESRAASSNYAHVLGRQGPTLELPGSPDGSGIP NNLRAAKSFADLRSFTPSPSQASSSYLAPGAGVGSIGPGSTARFGDYMGHVQPVSHPGTSGTPGPKGDHGLVAGL GSLSLSPFDPNSMQTQTRNAPGAIGSQRPGAGGGGGKNAPERQPRGPEWETSAGFGGRTGPNGHAQRGSDSSDNG ARVPQSSTGAPRYH* |
| Coding | >Hirsu2|7316 ATGAGCCAACAACCTCACGACTTGGGCTACTTGGACTACTCATCCCCCGCCAACCGCTCTCCCGGCTCCTCCAGG CAGAACTATGGCGGTGGCGCTTTCGCCTCGGGCCTGTCGCTGCCCCGACAAACGCAGCGCCCCTTCGACGCCCCC CTGGGCTCCTCTGCACTCTATCCCACCGACAGAATAACCGGCGCCTTCAACCCCAGGGCCATGGAGAACATGACG CTTGCCGCCGGCATGCACGGCGGCTACATGCTCGACAACGGCGCCAACTGGAGCTATAACGCCTCGGGCGTCGCC ACCGTCAACGGCAACATCCACGGGCCCAACCGCCAGCGCAGCGTCAACCGACGCGCCGCCCTGCCCCAAAACTGG ACTGATCACGCCGCCATGAGCATGCCCGCCACCCTGCAACCCTTCCCCACCAGCCTCAACGGCGGCCACCTGTCC AACGGCGGCCTTCGCGTCGACCAGGGTCCGTCGCACACCTCGCCCGATCTCCGCTCGACCGCCTCGGATGGCGAC CAGCTCATCCCCACGGCCATCGTCATCAAGAACATACCCTTTGCCGTCCGGAAGGAGACACTGACGTCCATCATG CTCGAGATGAACCTCCCCCAGCCCTACGCCTTCAACTACCACTTTGACAATGGCGTCTTTCGTGGCCTGGCCTTT GCCAACTTCCAGTCCGCCGAGGACACCCGGGTCGTCATCGACGCCATGAACGGCATGGACGTCCACGGCCGCAAG CTGCGCGTCGAGTACAAGAAGATGCTGCCCGAGGCGGAGCGCGAACGCATCGAGCGGGAGAAGCGAGAGAGGCGT GGTCAGCTCGAGGAGCAGCATCGCGCGCCCATGCTCCACAACCAGAGCTCCCTGCAGTCGCTCGGCGGCATGTCC CAGACGCAGCAGAGGGCCCCGGCGGGACACCTGGGTGACGTCGACCTCAACGACCCCCAGACTCTCGAATTCTAC ACCGAGCTGGTCATGTTCAAGCGCGACGACACGCGTGAAGTCCTTGTCTTTCCCCCGAGCATCATCCCGGAGCAC CGGCGCTCCATTCACATCCTCGCGCACCATATGGGGCTGGAGCATCAGTCGATGGGAGAGGCCGACTCGAGGCAG CTCACCGTCCTCAAGCGGCAACAGCCCTCCCCGACGACCAATGTGCAAAACGCCGCCGTGGCCAACAGCCTCGAC ATGCACAAGCGGGGGCTGAGCCGGGCCGCCACCTTCGACTTCGCCGCCGACCGGGAGTCGCGTGCCGCCAGCAGC AACTATGCTCATGTGCTGGGCCGGCAGGGGCCCACCCTCGAGCTCCCCGGGAGCCCGGACGGCAGCGGGATCCCC AACAATCTCCGTGCGGCTAAGAGCTTTGCCGACCTCCGATCCTTCACCCCGAGCCCGTCGCAGGCCTCGTCCAGC TACCTGGCTCCCGGGGCTGGTGTGGGTAGCATCGGACCGGGGTCGACGGCCCGATTCGGCGACTACATGGGCCAC GTCCAGCCTGTGTCCCATCCGGGGACATCGGGAACGCCCGGCCCCAAGGGCGACCACGGCCTCGTTGCCGGCCTC GGGAGCCTGAGCCTCAGCCCCTTCGACCCCAACTCGATGCAGACCCAGACGCGCAACGCCCCCGGCGCCATCGGT AGCCAGAGGCCCGGGGCCGGCGGCGGCGGCGGCAAGAACGCGCCGGAGAGGCAGCCCCGCGGTCCCGAGTGGGAG ACGTCGGCCGGCTTCGGCGGCCGGACCGGACCAAACGGCCACGCACAGCGAGGCAGCGATTCCTCCGACAACGGC GCTCGCGTGCCCCAAAGCTCGACGGGTGCCCCGAGGTACCACTAA |
| Transcript | >Hirsu2|7316 ATGAGCCAACAACCTCACGACTTGGGCTACTTGGACTACTCATCCCCCGCCAACCGCTCTCCCGGCTCCTCCAGG CAGAACTATGGCGGTGGCGCTTTCGCCTCGGGCCTGTCGCTGCCCCGACAAACGCAGCGCCCCTTCGACGCCCCC CTGGGCTCCTCTGCACTCTATCCCACCGACAGAATAACCGGCGCCTTCAACCCCAGGGCCATGGAGAACATGACG CTTGCCGCCGGCATGCACGGCGGCTACATGCTCGACAACGGCGCCAACTGGAGCTATAACGCCTCGGGCGTCGCC ACCGTCAACGGCAACATCCACGGGCCCAACCGCCAGCGCAGCGTCAACCGACGCGCCGCCCTGCCCCAAAACTGG ACTGATCACGCCGCCATGAGCATGCCCGCCACCCTGCAACCCTTCCCCACCAGCCTCAACGGCGGCCACCTGTCC AACGGCGGCCTTCGCGTCGACCAGGGTCCGTCGCACACCTCGCCCGATCTCCGCTCGACCGCCTCGGATGGCGAC CAGCTCATCCCCACGGCCATCGTCATCAAGAACATACCCTTTGCCGTCCGGAAGGAGACACTGACGTCCATCATG CTCGAGATGAACCTCCCCCAGCCCTACGCCTTCAACTACCACTTTGACAATGGCGTCTTTCGTGGCCTGGCCTTT GCCAACTTCCAGTCCGCCGAGGACACCCGGGTCGTCATCGACGCCATGAACGGCATGGACGTCCACGGCCGCAAG CTGCGCGTCGAGTACAAGAAGATGCTGCCCGAGGCGGAGCGCGAACGCATCGAGCGGGAGAAGCGAGAGAGGCGT GGTCAGCTCGAGGAGCAGCATCGCGCGCCCATGCTCCACAACCAGAGCTCCCTGCAGTCGCTCGGCGGCATGTCC CAGACGCAGCAGAGGGCCCCGGCGGGACACCTGGGTGACGTCGACCTCAACGACCCCCAGACTCTCGAATTCTAC ACCGAGCTGGTCATGTTCAAGCGCGACGACACGCGTGAAGTCCTTGTCTTTCCCCCGAGCATCATCCCGGAGCAC CGGCGCTCCATTCACATCCTCGCGCACCATATGGGGCTGGAGCATCAGTCGATGGGAGAGGCCGACTCGAGGCAG CTCACCGTCCTCAAGCGGCAACAGCCCTCCCCGACGACCAATGTGCAAAACGCCGCCGTGGCCAACAGCCTCGAC ATGCACAAGCGGGGGCTGAGCCGGGCCGCCACCTTCGACTTCGCCGCCGACCGGGAGTCGCGTGCCGCCAGCAGC AACTATGCTCATGTGCTGGGCCGGCAGGGGCCCACCCTCGAGCTCCCCGGGAGCCCGGACGGCAGCGGGATCCCC AACAATCTCCGTGCGGCTAAGAGCTTTGCCGACCTCCGATCCTTCACCCCGAGCCCGTCGCAGGCCTCGTCCAGC TACCTGGCTCCCGGGGCTGGTGTGGGTAGCATCGGACCGGGGTCGACGGCCCGATTCGGCGACTACATGGGCCAC GTCCAGCCTGTGTCCCATCCGGGGACATCGGGAACGCCCGGCCCCAAGGGCGACCACGGCCTCGTTGCCGGCCTC GGGAGCCTGAGCCTCAGCCCCTTCGACCCCAACTCGATGCAGACCCAGACGCGCAACGCCCCCGGCGCCATCGGT AGCCAGAGGCCCGGGGCCGGCGGCGGCGGCGGCAAGAACGCGCCGGAGAGGCAGCCCCGCGGTCCCGAGTGGGAG ACGTCGGCCGGCTTCGGCGGCCGGACCGGACCAAACGGCCACGCACAGCGAGGCAGCGATTCCTCCGACAACGGC GCTCGCGTGCCCCAAAGCTCGACGGGTGCCCCGAGGTACCACTAA |
| Gene | >Hirsu2|7316 ATGAGCCAACAACCTCACGACTTGGGCTACTTGGACTACTCATCCCCCGCCAACCGCTCTCCCGGCTCCTCCAGG CAGAACTATGGCGGTGGCGCTTTCGCCTCGGGCCTGTCGCTGCCCCGACAAACGCAGCGCCCCTTCGACGCCCCC CTGGGCTCCTCTGCACTCTATCCCACCGACAGAATAACCGGCGCCTTCAACCCCAGGGCCATGGAGAACATGACG CTTGCCGCCGGCATGCACGGCGGCTACATGCTCGACAACGGCGCCAACTGGAGCTATAACGCCTCGGGCGTCGCC ACCGTCAACGGCAACATCCACGGGCCCAACCGCCAGCGCAGCGTCAACCGACGCGCCGCCCTGCCCCAAGTGCGT AGCCCGCAACGCCTGCTGAATGACGACGTGCTGACCGCCCGCTCCGTAGAACTGGACTGATCACGCCGCCATGAG CATGCCCGCCACCCTGCAACCCTTCCCCACCAGCCTCAACGGCGGCCACCTGTCCAACGGCGGCCTTCGCGTCGA CCAGGGTCCGTCGCACACCTCGCCCGATCTCCGCTCGACCGCCTCGGATGGCGACCAGCTCATCCCCACGGCCAT CGTCATCAAGAACATACCCTTTGCCGTCCGGAAGGAGACACTGACGTCCATCATGCTCGAGATGAACCTCCCCCA GCCCTACGCCTTCAACTACCACTTTGACAATGGCGTCTTTCGTGGCCTGGCCTTTGCCAACTTCCAGTCCGCCGA GGACACCCGGGTCGTCATCGACGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTGCGCGTCGAGTACAAGAA GATGCTGCCCGAGGCGGAGCGCGAACGCATCGAGCGGGAGAAGCGAGAGAGGCGTGGTCAGCTCGAGGAGCAGCA TCGCGCGCCCATGCTCCACAACCAGAGCTCCCTGCAGTCGCTCGGCGGCATGTCCCAGACGCAGCAGAGGGCCCC GGCGGGACACCTGGGTACGCTCTCCCCCTCCCCTCGGCCCGCCAAGCCAAGGCAAAGCCCCGTGCCGTTTCTCAC CCCTCATACCCTCTCCGCAGGTGACGTCGACCTCAACGACCCCCAGACTCTCGAATTCTACACCGAGCTGGTCAT GTTCAAGCGCGACGACACGCGTGAAGTCCTTGTCTTTCCCCCGAGCATCATCCCGGAGCACCGGCGCTCCATTCA CATCCTCGCGCACCATATGGGGCTGGAGCATCAGTCGATGGGAGAGGCCGACTCGAGGCAGCTCACCGTCCTCAA GCGGCAACAGCCCTCCCCGACGACCAATGTGCAAAACGCCGCCGTGGCCAACAGCCTCGACATGCACAAGCGGGG GCTGAGCCGGGCCGCCACCTTCGACTTCGCCGCCGACCGGGAGTCGCGTGCCGCCAGCAGCAACTATGCTCATGT GCTGGGCCGGCAGGGGCCCACCCTCGAGCTCCCCGGGAGCCCGGACGGCAGCGGGATCCCCAACAATCTCCGTGC GGCTAAGAGCTTTGCCGACCTCCGATCCTTCACCCCGAGCCCGTCGCAGGCCTCGTCCAGCTACCTGGCTCCCGG GGCTGGTGTGGGTAGCATCGGACCGGGGTCGACGGCCCGATTCGGCGACTACATGGGCCACGTCCAGCCTGTGTC CCATCCGGGGACATCGGGAACGCCCGGCCCCAAGGGCGACCACGGCCTCGTTGCCGGCCTCGGGAGCCTGAGCCT CAGCCCCTTCGACCCCAACTCGATGCAGACCCAGACGCGCAACGCCCCCGGCGCCATCGGTAGCCAGAGGCCCGG GGCCGGCGGCGGCGGCGGCAAGAACGCGCCGGAGAGGCAGCCCCGCGGTCCCGAGTGGGAGACGTCGGCCGGCTT CGGCGGCCGGACCGGACCAAACGGCCACGCACAGCGAGGCAGCGGTATGTAGTCGACGCGTCCGGCACGTGACAC GGGGTCGCGCTCATCAACCAGTCGCTTCAGATTCCTCCGACAACGGCGCTCGCGTGCCCCAAAGCTCGACGGGTG CCCCGAGGTACCACTAA |