Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7304
Gene name
LocationContig_416:12537..13491
Strand+
Gene length (bp)954
Transcript length (bp)882
Coding sequence length (bp)882
Protein length (aa) 294

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08297 U3_snoRNA_assoc U3 snoRNA associated 3.6E-15 192 279

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0006364 rRNA processing Yes
GO:0030515 snoRNA binding Yes
GO:0003674 molecular_function No
GO:0009987 cellular process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0008152 metabolic process No
GO:0005488 binding No
GO:0044238 primary metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0003676 nucleic acid binding No
GO:0016070 RNA metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0016072 rRNA metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0034470 ncRNA processing No
GO:0090304 nucleic acid metabolic process No
GO:0003723 RNA binding No
GO:0006396 RNA processing No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 45 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7304
MVAQTRKRKAAVERAAEKAPEASTAAAPPKRQKLPVRSKTDEPPAQETSGKGTLITFHDDDGLDGGVKLDPAVGA
STTDAVATSLAEQETSDDDDAPPEAVSTAQAASDVKKSAQAAQEAARQKSAAEKRKRQERDALLKKQAEGRKRAE
KEAGAAAPQPEDGGGDVAPSTTHRLAAGGRRRTDKVSIPTVLPVEFLTDSSSEDDEEGEGNERRLDSSKRPPKKR
GVQAVEKRLSRQSKGPRDERRGSTVYRVAAERDERLAPKSRTESMNFRDALLRRKRTAVKPRPGFLIK*
Coding >Hirsu2|7304
ATGGTGGCGCAGACGCGCAAGAGAAAGGCTGCCGTGGAGCGAGCGGCAGAAAAGGCTCCCGAGGCATCGACGGCC
GCGGCGCCCCCCAAGCGCCAAAAGCTTCCCGTTCGATCGAAGACGGACGAGCCTCCGGCTCAGGAGACTTCCGGC
AAAGGCACGCTCATCACTTTCCATGATGATGATGGCCTTGACGGGGGCGTGAAACTGGACCCGGCAGTCGGCGCG
TCTACCACCGACGCGGTTGCAACGAGCCTTGCGGAGCAGGAGACGAGCGACGACGACGACGCGCCGCCCGAGGCG
GTGTCGACGGCACAGGCGGCTTCGGACGTAAAGAAGTCTGCTCAGGCTGCTCAAGAGGCCGCTAGGCAGAAATCG
GCCGCCGAGAAGCGAAAGCGCCAAGAGCGCGACGCACTCCTCAAGAAGCAGGCCGAAGGGCGCAAAAGGGCCGAA
AAGGAGGCCGGGGCCGCCGCTCCCCAACCAGAGGACGGCGGCGGTGACGTCGCTCCGTCGACTACGCACCGACTG
GCCGCAGGCGGCCGGAGGCGGACGGACAAGGTCTCAATCCCGACCGTCTTGCCCGTCGAGTTCCTCACCGACTCG
TCCAGCGAGGACGACGAAGAGGGCGAGGGTAACGAAAGAAGGCTCGACAGCAGCAAGCGGCCGCCCAAGAAGAGG
GGGGTGCAGGCGGTGGAGAAGAGGCTGTCGCGCCAGAGCAAGGGCCCGCGGGACGAAAGGAGGGGGTCTACTGTT
TATCGGGTAGCGGCCGAGAGGGACGAGAGGCTGGCACCCAAGAGCAGAACGGAGTCGATGAACTTCCGGGACGCC
CTGCTCCGGAGAAAGAGGACGGCGGTCAAGCCACGGCCCGGGTTTCTCATCAAGTAG
Transcript >Hirsu2|7304
ATGGTGGCGCAGACGCGCAAGAGAAAGGCTGCCGTGGAGCGAGCGGCAGAAAAGGCTCCCGAGGCATCGACGGCC
GCGGCGCCCCCCAAGCGCCAAAAGCTTCCCGTTCGATCGAAGACGGACGAGCCTCCGGCTCAGGAGACTTCCGGC
AAAGGCACGCTCATCACTTTCCATGATGATGATGGCCTTGACGGGGGCGTGAAACTGGACCCGGCAGTCGGCGCG
TCTACCACCGACGCGGTTGCAACGAGCCTTGCGGAGCAGGAGACGAGCGACGACGACGACGCGCCGCCCGAGGCG
GTGTCGACGGCACAGGCGGCTTCGGACGTAAAGAAGTCTGCTCAGGCTGCTCAAGAGGCCGCTAGGCAGAAATCG
GCCGCCGAGAAGCGAAAGCGCCAAGAGCGCGACGCACTCCTCAAGAAGCAGGCCGAAGGGCGCAAAAGGGCCGAA
AAGGAGGCCGGGGCCGCCGCTCCCCAACCAGAGGACGGCGGCGGTGACGTCGCTCCGTCGACTACGCACCGACTG
GCCGCAGGCGGCCGGAGGCGGACGGACAAGGTCTCAATCCCGACCGTCTTGCCCGTCGAGTTCCTCACCGACTCG
TCCAGCGAGGACGACGAAGAGGGCGAGGGTAACGAAAGAAGGCTCGACAGCAGCAAGCGGCCGCCCAAGAAGAGG
GGGGTGCAGGCGGTGGAGAAGAGGCTGTCGCGCCAGAGCAAGGGCCCGCGGGACGAAAGGAGGGGGTCTACTGTT
TATCGGGTAGCGGCCGAGAGGGACGAGAGGCTGGCACCCAAGAGCAGAACGGAGTCGATGAACTTCCGGGACGCC
CTGCTCCGGAGAAAGAGGACGGCGGTCAAGCCACGGCCCGGGTTTCTCATCAAGTAG
Gene >Hirsu2|7304
ATGGTGGCGCAGACGCGCAAGAGAAAGGCTGCCGTGGAGCGAGCGGCAGAAAAGGCTCCCGAGGCATCGACGGCC
GCGGCGCCCCCCAAGCGCCAAAAGCTTCCCGTTCGATCGAAGACGGACGAGCCTCCGGCTCAGGAGACTTCCGGC
AAAGGCACGCTCATCACTTTCCATGATGATGATGGCCTTGACGGGGGCGTGAAACTGGACCCGGCAGTCGGCGCG
TCTACCACCGACGCGGTTGCAACGAGCCTTGCGGAGCAGGAGACGAGCGACGACGACGACGCGCCGCCCGAGGCG
GTGTCGACGGCACAGGCGGCTTCGGACGTAAAGAAGTCTGCTCAGGCTGCTCAAGAGGCCGCTAGGCAGTATGTT
GCTCTCGCCGTGGTCCGAAACAGATGATCGTGCGACCCTGTTTGTCTGACAGTCCCGTGATGCAGGAAATCGGCC
GCCGAGAAGCGAAAGCGCCAAGAGCGCGACGCACTCCTCAAGAAGCAGGCCGAAGGGCGCAAAAGGGCCGAAAAG
GAGGCCGGGGCCGCCGCTCCCCAACCAGAGGACGGCGGCGGTGACGTCGCTCCGTCGACTACGCACCGACTGGCC
GCAGGCGGCCGGAGGCGGACGGACAAGGTCTCAATCCCGACCGTCTTGCCCGTCGAGTTCCTCACCGACTCGTCC
AGCGAGGACGACGAAGAGGGCGAGGGTAACGAAAGAAGGCTCGACAGCAGCAAGCGGCCGCCCAAGAAGAGGGGG
GTGCAGGCGGTGGAGAAGAGGCTGTCGCGCCAGAGCAAGGGCCCGCGGGACGAAAGGAGGGGGTCTACTGTTTAT
CGGGTAGCGGCCGAGAGGGACGAGAGGCTGGCACCCAAGAGCAGAACGGAGTCGATGAACTTCCGGGACGCCCTG
CTCCGGAGAAAGAGGACGGCGGTCAAGCCACGGCCCGGGTTTCTCATCAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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