Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7260
Gene name
LocationContig_410:18512..19229
Strand+
Gene length (bp)717
Transcript length (bp)597
Coding sequence length (bp)597
Protein length (aa) 199

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-07 14 128
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-06 29 101

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 119 4.0E-28
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 119 5.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-27
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 1.0E-26
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 20 119 4.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 25 119 4.0E-28
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 25 119 5.0E-28
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 25 119 3.0E-27
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 27 115 1.0E-26
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 20 119 4.0E-24
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 20 119 4.0E-24
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 20 119 4.0E-24
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 20 129 2.0E-23
sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 25 158 2.0E-23
sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1 25 119 3.0E-23
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=1 SV=3 14 119 1.0E-22
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 25 119 5.0E-22
sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 25 134 1.0E-21
sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 25 134 1.0E-21
sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1 25 118 3.0E-21
sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1 25 118 7.0E-21
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 17 114 2.0E-18
sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 23 119 6.0E-18
sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 23 109 2.0E-13
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.1893 0.8884 0.0506 0.0121 0.1383 0.0028 0.025 0.0074 0.0123 0.0004

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3721
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1688
Ophiocordyceps australis map64 (Brazil) OphauB2|2283
Ophiocordyceps camponoti-floridani Ophcf2|07190
Ophiocordyceps camponoti-rufipedis Ophun1|2341
Ophiocordyceps kimflemingae Ophio5|554
Ophiocordyceps subramaniannii Hirsu2|7260 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7260
MATRAAARPLAPNASLPAKIQSTAPNQTLYVTNLPSSKIRKADLRTALYMLFSTYGSVLDVVALKTMSMRGQAHI
VYRDIQTSTQAMRHLDGQLFLGRPLKIEYAKSKSHFVAKLDGTFKIPNASGATNVEQTELQKSIFDAPPSASAQA
TAKAANTGDQTMKDADAPEGRGQKRTRADESDESEGDVAMEEDSDDDE*
Coding >Hirsu2|7260
ATGGCGACGAGAGCGGCGGCCCGTCCCCTGGCGCCAAATGCTTCTCTCCCGGCCAAGATCCAGTCCACGGCGCCA
AATCAAACTCTCTACGTCACGAACCTGCCGTCGTCCAAAATCCGGAAAGCCGACCTGCGGACTGCTCTCTACATG
CTGTTTTCGACCTACGGCTCGGTGCTCGATGTCGTCGCTCTCAAGACAATGTCGATGCGAGGACAGGCCCACATC
GTCTACCGAGACATACAAACGTCGACACAGGCCATGAGGCACCTGGACGGGCAGCTGTTTCTGGGCCGTCCCCTC
AAAATCGAATACGCCAAGTCCAAATCGCACTTCGTGGCCAAGCTGGACGGGACCTTCAAGATACCCAACGCGTCG
GGTGCCACCAATGTCGAGCAGACGGAGCTGCAGAAGAGCATCTTCGACGCCCCGCCCTCGGCCTCTGCCCAGGCC
ACGGCGAAAGCGGCCAACACTGGCGATCAGACCATGAAGGACGCCGACGCGCCCGAGGGTCGCGGCCAGAAACGG
ACTCGTGCCGACGAGAGCGACGAAAGCGAAGGGGACGTGGCGATGGAGGAGGACAGCGACGATGATGAATGA
Transcript >Hirsu2|7260
ATGGCGACGAGAGCGGCGGCCCGTCCCCTGGCGCCAAATGCTTCTCTCCCGGCCAAGATCCAGTCCACGGCGCCA
AATCAAACTCTCTACGTCACGAACCTGCCGTCGTCCAAAATCCGGAAAGCCGACCTGCGGACTGCTCTCTACATG
CTGTTTTCGACCTACGGCTCGGTGCTCGATGTCGTCGCTCTCAAGACAATGTCGATGCGAGGACAGGCCCACATC
GTCTACCGAGACATACAAACGTCGACACAGGCCATGAGGCACCTGGACGGGCAGCTGTTTCTGGGCCGTCCCCTC
AAAATCGAATACGCCAAGTCCAAATCGCACTTCGTGGCCAAGCTGGACGGGACCTTCAAGATACCCAACGCGTCG
GGTGCCACCAATGTCGAGCAGACGGAGCTGCAGAAGAGCATCTTCGACGCCCCGCCCTCGGCCTCTGCCCAGGCC
ACGGCGAAAGCGGCCAACACTGGCGATCAGACCATGAAGGACGCCGACGCGCCCGAGGGTCGCGGCCAGAAACGG
ACTCGTGCCGACGAGAGCGACGAAAGCGAAGGGGACGTGGCGATGGAGGAGGACAGCGACGATGATGAATGA
Gene >Hirsu2|7260
ATGGCGACGAGAGCGGCGGCCCGTCCCCTGGCGCCAAATGCTTCTCTCCCGGCCAAGATCCAGTCCACGGCGCCA
AATCAAACGTGAGTAATCTCGAATGGTTCCCGTTCTCTTGCGCGTGCTTGGCGGATAACACCTAGTAGTCTCTAC
GTCACGAACCTGCCGTCGTCCAAAATCCGGAAAGCCGACCTGCGGACTGCTCTCTACATGCTGTTTTCGACCTAC
GGCTCGGTGCTCGATGTCGTCGCTCTCAAGACAATGTCGATGCGAGGACAGGCCCACATCGTCTACCGAGACATA
CAAACGTCGACACAGGCCATGAGGCACCTGGACGGGCAGCTGTTTCTGGGCCGTCCCCTCGTGAGAAGCCCCTCT
CGGTCCAAGCTCAGCCGCGACGACGGGAGGAGCTAACCTGGACAGAAAATCGAATACGCCAAGTCCAAATCGCAC
TTCGTGGCCAAGCTGGACGGGACCTTCAAGATACCCAACGCGTCGGGTGCCACCAATGTCGAGCAGACGGAGCTG
CAGAAGAGCATCTTCGACGCCCCGCCCTCGGCCTCTGCCCAGGCCACGGCGAAAGCGGCCAACACTGGCGATCAG
ACCATGAAGGACGCCGACGCGCCCGAGGGTCGCGGCCAGAAACGGACTCGTGCCGACGAGAGCGACGAAAGCGAA
GGGGACGTGGCGATGGAGGAGGACAGCGACGATGATGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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