© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|7213 |
| Gene name | |
| Location | Contig_407:16880..19448 |
| Strand | + |
| Gene length (bp) | 2568 |
| Transcript length (bp) | 2256 |
| Coding sequence length (bp) | 2256 |
| Protein length (aa) | 752 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 7.0E-45 | 219 | 492 |
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 1.3E-29 | 573 | 730 |
| PF00890 | FAD_binding_2 | FAD binding domain | 2.9E-06 | 219 | 251 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B5WWZ9|FAO2_LOTJA | Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1 | 208 | 740 | 7.0E-85 |
| sp|B5WWZ8|FAO1_LOTJA | Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1 | 205 | 740 | 2.0E-71 |
| sp|Q9LW56|FAO3_ARATH | Long-chain-alcohol oxidase FAO3 OS=Arabidopsis thaliana GN=FAO3 PE=1 SV=1 | 236 | 743 | 1.0E-70 |
| sp|Q94BP3|FAO4B_ARATH | Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana GN=FAO4B PE=2 SV=2 | 112 | 740 | 1.0E-64 |
| sp|Q9ZWB9|FAO1_ARATH | Long-chain-alcohol oxidase FAO1 OS=Arabidopsis thaliana GN=FAO1 PE=3 SV=2 | 236 | 737 | 6.0E-60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B5WWZ9|FAO2_LOTJA | Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1 | 208 | 740 | 7.0E-85 |
| sp|B5WWZ8|FAO1_LOTJA | Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1 | 205 | 740 | 2.0E-71 |
| sp|Q9LW56|FAO3_ARATH | Long-chain-alcohol oxidase FAO3 OS=Arabidopsis thaliana GN=FAO3 PE=1 SV=1 | 236 | 743 | 1.0E-70 |
| sp|Q94BP3|FAO4B_ARATH | Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana GN=FAO4B PE=2 SV=2 | 112 | 740 | 1.0E-64 |
| sp|Q9ZWB9|FAO1_ARATH | Long-chain-alcohol oxidase FAO1 OS=Arabidopsis thaliana GN=FAO1 PE=3 SV=2 | 236 | 737 | 6.0E-60 |
| sp|O65709|FAO4A_ARATH | Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=3 SV=2 | 236 | 737 | 5.0E-59 |
| sp|P9WMV7|Y492_MYCTU | Uncharacterized GMC-type oxidoreductase Rv0492c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0492c PE=1 SV=1 | 219 | 729 | 5.0E-39 |
| sp|P9WMV6|Y492_MYCTO | Uncharacterized GMC-type oxidoreductase MT0511/MT0512 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0511/MT0512 PE=3 SV=1 | 219 | 729 | 5.0E-39 |
| sp|P55582|Y4NJ_RHISN | Uncharacterized GMC-type oxidoreductase y4nJ OS=Rhizobium sp. (strain NGR234) GN=NGR_a02320 PE=3 SV=1 | 215 | 733 | 2.0E-23 |
| sp|B5ZUG2|BETA_RHILW | Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1 | 216 | 478 | 3.0E-06 |
| sp|Q2MF66|LIVQ_STRLV | 6'''-hydroxyparomomycin C oxidase OS=Streptomyces lividus GN=livQ PE=1 SV=1 | 674 | 740 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0043168 | anion binding | No |
| GO:0036094 | small molecule binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7213 MDIPPQHAPVATPLPEPPSGQLVSETQWDTLLALLDGCMPAIASAAAGSADPDKLLLDPDRFRATLDSADRFLQG PPDRKALEAFLAHSPSRAADFKAACLRFLASTPHRDRLLRIMGLLGTNYGSLLLTGYWTPVAQQPTETREAIVSS WASSSFAALRMLAKAVTSMAQNANAVSSPYFQQLSGYTDVPRNWAAVDGYPFRFLQLDAGDAVHEMTTDVVVVGS GCGGAVSARNLAEAGHRVLVVEKGYHFPPSHLPMPQAAACSYLFDNGGALVSDDASINVLSGGALGGGGTVNWSV CFRTPHSVRDEWAAAGLPLFASADFDDCLDRVWESIGASTDGIRHNHRNRSMLDGCRKLAWLAAPVEQNTGDREH ACGQCHLGCGSAEKRGPTVAWLPAAAEAGAQLMEGFQVDRVTFAADGVTATGVEGLWTSRGPGGDLGAPPTSRTQ RRVRIKASRVILSAGSLWSPVILMKSGVENRNVGRNLHLHPCNLVSGAYKEDVRPWEGSIITTYSDEFADLDCKG HGVKLEPSCMVPYMALSMQTWLGGLDARMLALKYRHMDCFVALTRDRDSGRVYVDRRTGRPRIDYTISDFDRDHT LEGVQALAKICYVTGATEIRAGLPGLAPFVVEDGGERQRKHPEGRDPEFTDAAFGAWLARLRAADNKPPAAVFGS AHQMGSCRMSADESSGVVDGQGRVWGREGLYVADASVFPSASGVNPMVTAMALADWISRGVARELGGGGGGGGGR G* |
| Coding | >Hirsu2|7213 ATGGACATACCGCCCCAGCACGCGCCCGTGGCCACGCCGCTGCCCGAGCCTCCCTCGGGCCAGCTCGTGTCCGAG ACGCAGTGGGACACGCTCCTGGCCCTCCTCGACGGCTGCATGCCCGCCATCGCCTCCGCCGCCGCCGGCTCGGCC GACCCGGACAAGCTTCTCCTCGACCCCGACCGCTTCCGCGCCACCCTCGACTCGGCCGACCGCTTCCTGCAAGGG CCGCCCGACAGGAAGGCGCTCGAGGCCTTCCTCGCCCACAGCCCTTCGCGCGCCGCCGACTTCAAGGCCGCCTGC CTGCGCTTCCTGGCCAGCACGCCGCATAGGGACCGCCTCCTCCGCATCATGGGCTTGCTAGGGACAAACTACGGC AGCCTGCTCCTGACGGGCTACTGGACCCCCGTCGCCCAGCAGCCGACCGAGACACGCGAGGCCATCGTCAGCTCC TGGGCCTCCTCCTCCTTCGCCGCCCTGCGCATGCTCGCCAAGGCCGTCACGTCGATGGCCCAGAACGCAAACGCC GTCAGCAGCCCCTACTTCCAGCAGCTGTCGGGCTACACCGACGTGCCCCGGAACTGGGCCGCCGTCGACGGCTAC CCCTTCCGCTTCCTCCAGCTCGACGCCGGCGACGCCGTGCACGAGATGACGACCGACGTCGTCGTCGTCGGCTCC GGCTGCGGCGGCGCCGTCTCGGCCAGGAACCTGGCCGAGGCCGGCCACCGCGTCCTCGTCGTCGAGAAGGGCTAC CACTTCCCGCCCTCGCACCTGCCCATGCCCCAGGCCGCCGCCTGCAGCTACCTCTTCGACAACGGCGGCGCCCTC GTGTCCGACGACGCGAGCATCAACGTCCTCAGCGGCGGCGCCCTCGGCGGCGGCGGCACCGTCAACTGGAGCGTC TGCTTCCGCACCCCGCACTCCGTCCGCGACGAGTGGGCCGCCGCCGGCCTGCCGCTCTTCGCCTCGGCCGACTTC GACGACTGCCTCGACCGCGTCTGGGAGTCCATCGGCGCCAGCACCGACGGCATCCGCCACAACCACCGGAACCGG AGCATGCTGGACGGCTGCCGCAAGCTGGCCTGGCTGGCCGCCCCGGTCGAGCAGAACACGGGCGACAGGGAGCAC GCCTGCGGCCAGTGCCACCTGGGCTGCGGCTCGGCCGAGAAGAGGGGCCCGACGGTCGCCTGGCTGCCCGCCGCC GCCGAGGCCGGCGCCCAGCTCATGGAGGGCTTCCAGGTCGACAGGGTCACCTTCGCCGCCGACGGCGTCACGGCC ACGGGCGTCGAGGGGCTGTGGACGTCGCGCGGGCCCGGCGGCGACCTCGGCGCGCCCCCGACGTCGCGGACGCAG AGGAGGGTCCGCATCAAGGCCAGCAGGGTCATCCTGTCCGCCGGCTCGCTCTGGAGCCCCGTCATCCTGATGAAG AGCGGCGTCGAGAACCGGAACGTGGGCCGAAACCTGCACCTGCATCCTTGCAACCTGGTGTCGGGCGCGTACAAG GAGGACGTGCGGCCGTGGGAGGGCAGCATCATCACCACCTACAGCGACGAGTTTGCGGACCTGGACTGCAAGGGT CACGGCGTCAAGCTGGAGCCCTCGTGCATGGTGCCGTACATGGCCCTCAGCATGCAGACGTGGCTCGGCGGGCTG GACGCCAGGATGCTGGCGCTCAAGTACCGGCACATGGACTGCTTCGTCGCGCTGACGCGCGACCGCGACAGCGGG CGGGTGTACGTGGACCGGCGGACGGGACGGCCGCGGATCGACTACACCATCTCCGACTTCGACCGCGACCACACG CTCGAGGGCGTGCAGGCGCTGGCCAAGATCTGCTACGTGACGGGGGCGACGGAGATCCGGGCGGGCCTGCCGGGG CTGGCGCCGTTCGTGGTCGAGGACGGGGGCGAGCGGCAGCGGAAGCACCCGGAGGGCCGGGACCCCGAGTTCACG GACGCGGCGTTCGGGGCGTGGCTGGCGCGGCTGCGGGCGGCGGACAACAAGCCGCCGGCGGCCGTGTTCGGGTCG GCGCACCAGATGGGCTCGTGCCGGATGAGCGCCGACGAGTCGTCCGGGGTGGTGGACGGGCAGGGCCGGGTGTGG GGCCGGGAGGGGCTGTACGTGGCCGACGCCAGCGTGTTTCCGAGCGCGAGCGGAGTGAACCCGATGGTGACGGCC ATGGCCCTGGCCGACTGGATCTCGCGCGGCGTGGCCAGGGAGCTGGGTGGCGGCGGCGGCGGCGGCGGCGGCCGA GGCTGA |
| Transcript | >Hirsu2|7213 ATGGACATACCGCCCCAGCACGCGCCCGTGGCCACGCCGCTGCCCGAGCCTCCCTCGGGCCAGCTCGTGTCCGAG ACGCAGTGGGACACGCTCCTGGCCCTCCTCGACGGCTGCATGCCCGCCATCGCCTCCGCCGCCGCCGGCTCGGCC GACCCGGACAAGCTTCTCCTCGACCCCGACCGCTTCCGCGCCACCCTCGACTCGGCCGACCGCTTCCTGCAAGGG CCGCCCGACAGGAAGGCGCTCGAGGCCTTCCTCGCCCACAGCCCTTCGCGCGCCGCCGACTTCAAGGCCGCCTGC CTGCGCTTCCTGGCCAGCACGCCGCATAGGGACCGCCTCCTCCGCATCATGGGCTTGCTAGGGACAAACTACGGC AGCCTGCTCCTGACGGGCTACTGGACCCCCGTCGCCCAGCAGCCGACCGAGACACGCGAGGCCATCGTCAGCTCC TGGGCCTCCTCCTCCTTCGCCGCCCTGCGCATGCTCGCCAAGGCCGTCACGTCGATGGCCCAGAACGCAAACGCC GTCAGCAGCCCCTACTTCCAGCAGCTGTCGGGCTACACCGACGTGCCCCGGAACTGGGCCGCCGTCGACGGCTAC CCCTTCCGCTTCCTCCAGCTCGACGCCGGCGACGCCGTGCACGAGATGACGACCGACGTCGTCGTCGTCGGCTCC GGCTGCGGCGGCGCCGTCTCGGCCAGGAACCTGGCCGAGGCCGGCCACCGCGTCCTCGTCGTCGAGAAGGGCTAC CACTTCCCGCCCTCGCACCTGCCCATGCCCCAGGCCGCCGCCTGCAGCTACCTCTTCGACAACGGCGGCGCCCTC GTGTCCGACGACGCGAGCATCAACGTCCTCAGCGGCGGCGCCCTCGGCGGCGGCGGCACCGTCAACTGGAGCGTC TGCTTCCGCACCCCGCACTCCGTCCGCGACGAGTGGGCCGCCGCCGGCCTGCCGCTCTTCGCCTCGGCCGACTTC GACGACTGCCTCGACCGCGTCTGGGAGTCCATCGGCGCCAGCACCGACGGCATCCGCCACAACCACCGGAACCGG AGCATGCTGGACGGCTGCCGCAAGCTGGCCTGGCTGGCCGCCCCGGTCGAGCAGAACACGGGCGACAGGGAGCAC GCCTGCGGCCAGTGCCACCTGGGCTGCGGCTCGGCCGAGAAGAGGGGCCCGACGGTCGCCTGGCTGCCCGCCGCC GCCGAGGCCGGCGCCCAGCTCATGGAGGGCTTCCAGGTCGACAGGGTCACCTTCGCCGCCGACGGCGTCACGGCC ACGGGCGTCGAGGGGCTGTGGACGTCGCGCGGGCCCGGCGGCGACCTCGGCGCGCCCCCGACGTCGCGGACGCAG AGGAGGGTCCGCATCAAGGCCAGCAGGGTCATCCTGTCCGCCGGCTCGCTCTGGAGCCCCGTCATCCTGATGAAG AGCGGCGTCGAGAACCGGAACGTGGGCCGAAACCTGCACCTGCATCCTTGCAACCTGGTGTCGGGCGCGTACAAG GAGGACGTGCGGCCGTGGGAGGGCAGCATCATCACCACCTACAGCGACGAGTTTGCGGACCTGGACTGCAAGGGT CACGGCGTCAAGCTGGAGCCCTCGTGCATGGTGCCGTACATGGCCCTCAGCATGCAGACGTGGCTCGGCGGGCTG GACGCCAGGATGCTGGCGCTCAAGTACCGGCACATGGACTGCTTCGTCGCGCTGACGCGCGACCGCGACAGCGGG CGGGTGTACGTGGACCGGCGGACGGGACGGCCGCGGATCGACTACACCATCTCCGACTTCGACCGCGACCACACG CTCGAGGGCGTGCAGGCGCTGGCCAAGATCTGCTACGTGACGGGGGCGACGGAGATCCGGGCGGGCCTGCCGGGG CTGGCGCCGTTCGTGGTCGAGGACGGGGGCGAGCGGCAGCGGAAGCACCCGGAGGGCCGGGACCCCGAGTTCACG GACGCGGCGTTCGGGGCGTGGCTGGCGCGGCTGCGGGCGGCGGACAACAAGCCGCCGGCGGCCGTGTTCGGGTCG GCGCACCAGATGGGCTCGTGCCGGATGAGCGCCGACGAGTCGTCCGGGGTGGTGGACGGGCAGGGCCGGGTGTGG GGCCGGGAGGGGCTGTACGTGGCCGACGCCAGCGTGTTTCCGAGCGCGAGCGGAGTGAACCCGATGGTGACGGCC ATGGCCCTGGCCGACTGGATCTCGCGCGGCGTGGCCAGGGAGCTGGGTGGCGGCGGCGGCGGCGGCGGCGGCCGA GGCTGA |
| Gene | >Hirsu2|7213 ATGGACATACCGCCCCAGCACGCGCCCGTGGCCACGCCGCTGCCCGAGCCTCCCTCGGGCCAGCTCGTGTCCGAG ACGCAGTGGGACACGCTCCTGGCCCTCCTCGACGGCTGCATGCCCGCCATCGCCTCCGCCGCCGCCGGCTCGGCC GACCCGGACAAGCTTCTCCTCGACCCCGACCGCTTCCGCGCCACCCTCGACTCGGCCGACCGCTTCCTGCAAGGG CCGCCCGACAGGAAGGCGCTCGAGGCCTTCCTCGCCCACAGCCCTTCGCGCGCCGCCGACTTCAAGGCCGCCTGC CTGCGCTTCCTGGCCAGCACGCCGCATAGGGACCGCCTCCTCCGCATCATGGGCTTGCTAGGGTGAGTCTTCGGT TTTGTCCTGCCATCCCATCCCCGTCCCCGTCAGCCGGAGAGGCATCGGCGGCCACCACCACGCGCCCGAGCTGAC GGGGCCGCCAGGACAAACTACGGCAGCCTGCTCCTGACGGGCTACTGGACCCCCGTCGCCCAGCAGCCGACCGAG ACACGCGAGGCCATCGTCAGCTCCTGGGCCTCCTCCTCCTTCGCCGCCCTGCGCATGCTCGCCAAGGCCGTCACG TCGATGGCCCAGAACGCAAACGCCGTCAGCAGCCCCTACTTCCAGCAGCTGTCGGGCTACACCGACGTGCCCCGG AACTGGGCCGCCGTCGACGGCTACCCCTTCCGCTTCCTCCAGCTCGACGCCGGCGACGCCGTGCACGAGATGACG ACCGACGTCGTCGTCGTCGGCTCCGGCTGCGGCGGCGCCGTCTCGGCCAGGAACCTGGCCGAGGCCGGCCACCGC GTCCTCGTCGTCGAGAAGGGCTACCACTTCCCGCCCTCGCACCTGCCCATGCCCCAGGCCGCCGCCTGCAGCTAC CTCTTCGACAACGGCGGCGCCCTCGTGTCCGACGACGCGAGCATCAACGTCCTCAGCGGCGGCGCCCTCGGCGGC GGCGGCACCGTCAACTGGAGCGTCTGCTTCCGCACCCCGCACTCCGTCCGCGACGAGTGGGCCGCCGCCGGCCTG CCGCTCTTCGCCTCGGCCGACTTCGACGACTGCCTCGACCGCGTCTGGGAGTCCATCGGCGCCAGCACCGACGGC ATCCGCCACAACCACCGGAACCGGAGCATGCTGGACGGCTGCCGCAAGCTGGCCTGGCTGGCCGCCCCGGTCGAG CAGAACACGGGCGACAGGGAGCACGCCTGCGGCCAGTGCCACCTGGGCTGCGGCTCGGCCGAGAAGAGGGGCCCG ACGGTCGCCTGGCTGCCCGCCGCCGCCGAGGCCGGCGCCCAGCTCATGGAGGGCTTCCAGGTCGACAGGGTCACC TTCGCCGCCGACGGCGTCACGGCCACGGGCGTCGAGGGGCTGTGGACGTCGCGCGGGCCCGGCGGCGACCTCGGC GCGCCCCCGACGTCGCGGACGCAGAGGAGGGTCCGCATCAAGGCCAGCAGGGTCATCCTGTCCGCCGGCTCGCTC TGGAGCCCCGTCATCCTGATGAAGAGCGGCGTCGAGGTGAGTCTGTCCAGCAACAGCAACAGGAGAAGGGACGGG CAAAAAAAAAAAAAAAGGTGCCGATGGGGTCGACGCGACTGACGGCGGGCCGCGCAGAACCGGAACGTGGGCCGA AACCTGCACCTGCATCCTTGCAACCTGGTGTCGGGCGCGTACAAGGAGGACGTGCGGCCGTGGGAGGGCAGCATC ATCACCACCTACAGCGACGAGTTTGCGGACCTGGACTGCAAGGGTCACGGCGTCAAGCTGGAGCCCTCGTGCATG GTGGTGAGTGGCCTGCCTCGTCTTTTCTCGAGCGAACCTGTCGTCTGTCCTCAAGGCGGAGAGAAGTTGTCGTCT GTCCTAGAAGACGGGACAAGAGGCGGGGGCTGACCCGTGGACCAGCCGTACATGGCCCTCAGCATGCAGACGTGG CTCGGCGGGCTGGACGCCAGGATGCTGGCGCTCAAGTACCGGCACATGGACTGCTTCGTCGCGCTGACGCGCGAC CGCGACAGCGGGCGGGTGTACGTGGACCGGCGGACGGGACGGCCGCGGATCGACTACACCATCTCCGACTTCGAC CGCGACCACACGCTCGAGGGCGTGCAGGCGCTGGCCAAGATCTGCTACGTGACGGGGGCGACGGAGATCCGGGCG GGCCTGCCGGGGCTGGCGCCGTTCGTGGTCGAGGACGGGGGCGAGCGGCAGCGGAAGCACCCGGAGGGCCGGGAC CCCGAGTTCACGGACGCGGCGTTCGGGGCGTGGCTGGCGCGGCTGCGGGCGGCGGACAACAAGCCGCCGGCGGCC GTGTTCGGGTCGGCGCACCAGATGGGCTCGTGCCGGATGAGCGCCGACGAGTCGTCCGGGGTGGTGGACGGGCAG GGCCGGGTGTGGGGCCGGGAGGGGCTGTACGTGGCCGACGCCAGCGTGTTTCCGAGCGCGAGCGGAGTGAACCCG ATGGTGACGGCCATGGCCCTGGCCGACTGGATCTCGCGCGGCGTGGCCAGGGAGCTGGGTGGCGGCGGCGGCGGC GGCGGCGGCCGAGGCTGA |