Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7191
Gene name
LocationContig_404:9129..10105
Strand+
Gene length (bp)976
Transcript length (bp)579
Coding sequence length (bp)579
Protein length (aa) 193

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10785 NADH-u_ox-rdase NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit 2.2E-27 22 107
PF12853 NADH_u_ox_C C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit 8.8E-26 116 190

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo20.9 PE=1 SV=1 6 192 9.0E-92

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 45 63 18
2 78 95 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7191
MADTTTTQKPPSYVGTSKVVETDYPLIDNDPHFKRVVGYARRSDYVAGALAASFAPVALLTLERFAPSHVGRGGF
PKVLRLAGFIGLAGGFLYFYQRSCLRFYGATENSREIEMDMREMVDKVKAGQPLYGESKLSPYLQGVAARQSRYS
ALFLSTVPWFNFVNHNQHGVDTAKYYQQAERELEAERAVKGS*
Coding >Hirsu2|7191
ATGGCGGACACGACGACGACACAGAAACCCCCTTCCTACGTGGGCACGAGCAAGGTGGTAGAGACGGACTATCCG
CTCATCGACAATGACCCCCACTTCAAGCGCGTGGTAGGCTACGCCCGGAGGTCGGACTACGTCGCCGGCGCGCTG
GCGGCCTCGTTCGCGCCCGTGGCGCTCTTGACGCTCGAGCGGTTCGCGCCCTCGCACGTCGGCAGGGGCGGCTTC
CCCAAGGTCTTGCGTCTGGCCGGCTTCATCGGCCTGGCCGGCGGCTTCCTCTACTTTTACCAACGCTCGTGCCTG
CGGTTCTACGGCGCGACGGAGAACTCGCGCGAGATCGAAATGGACATGCGCGAGATGGTGGACAAGGTCAAGGCC
GGGCAGCCGCTCTACGGCGAGAGCAAGCTGAGCCCGTACCTGCAGGGCGTCGCGGCGCGACAGAGCCGCTACTCG
GCCCTCTTCCTCAGCACCGTGCCGTGGTTCAACTTTGTCAACCACAACCAGCACGGCGTCGACACGGCCAAGTAT
TACCAGCAGGCCGAGCGGGAGCTGGAGGCAGAGCGGGCGGTCAAGGGCTCGTGA
Transcript >Hirsu2|7191
ATGGCGGACACGACGACGACACAGAAACCCCCTTCCTACGTGGGCACGAGCAAGGTGGTAGAGACGGACTATCCG
CTCATCGACAATGACCCCCACTTCAAGCGCGTGGTAGGCTACGCCCGGAGGTCGGACTACGTCGCCGGCGCGCTG
GCGGCCTCGTTCGCGCCCGTGGCGCTCTTGACGCTCGAGCGGTTCGCGCCCTCGCACGTCGGCAGGGGCGGCTTC
CCCAAGGTCTTGCGTCTGGCCGGCTTCATCGGCCTGGCCGGCGGCTTCCTCTACTTTTACCAACGCTCGTGCCTG
CGGTTCTACGGCGCGACGGAGAACTCGCGCGAGATCGAAATGGACATGCGCGAGATGGTGGACAAGGTCAAGGCC
GGGCAGCCGCTCTACGGCGAGAGCAAGCTGAGCCCGTACCTGCAGGGCGTCGCGGCGCGACAGAGCCGCTACTCG
GCCCTCTTCCTCAGCACCGTGCCGTGGTTCAACTTTGTCAACCACAACCAGCACGGCGTCGACACGGCCAAGTAT
TACCAGCAGGCCGAGCGGGAGCTGGAGGCAGAGCGGGCGGTCAAGGGCTCGTGA
Gene >Hirsu2|7191
ATGGCGGACACGACGACGACACAGAAACCCCCTTCCTACGTGGGCACGAGCAAGGTGGTAGAGACGGACTATCCG
GTAACGAATTGACCCCCCCTCGCCGCTCGTTCAGCGAGCGACCTTGCCTCACTTCGAAGCGGCGACCAAGCTGAC
CCGATCCCAGCTCATCGACAATGACCCGTACGCCTTCCTGATCTCTCTACCCCCTCTTTCACCCTGCTTTCCTGC
GACGCGGCAGACAATCGATCGGGATAAGAAGAGAAGCTGACGCTTGCCTCCCCGCGCCGCAGCCACTTCAAGCGC
GTGGTAGGCTACGCCCGGAGGTCGGACTACGTCGCCGGCGCGCTGGCGGCCTCGTTCGCGCCCGTGGCGCTCTTG
ACGCTCGAGCGGTTCGCGCCCTCGCACGTCGGCAGGGGCGGCTTCCCCAAGGTCTTGCGTCTGGCCGGCTTCATC
GGCCTGGCCGGCGGCTTCCTCTACTTTTACCAACGCTCGTGCCGTACGTCCGAACCGAATTCCTTACTGTCATGG
GAGCGAAGGCGGAGAACACGATGGGAAGAGGACCAGGCAGCAAGATGAGGGGGGGGAAGACGTCGAAGAGAGAGG
CAGACGAAAAGGGAGAGGGGGGGAAGATGTGGTCGATGACCAAGGATGGGATCCCCTTTTTTTCGTCTTGGCTGT
CGGACTAACAAGGGCGGCAGTGCGGTTCTACGGCGCGACGGAGAACTCGCGCGAGATCGAAATGGACATGCGCGA
GATGGTGGACAAGGTCAAGGCCGGGCAGCCGCTCTACGGCGAGAGCAAGCTGAGCCCGTACCTGCAGGGCGTCGC
GGCGCGACAGAGCCGCTACTCGGCCCTCTTCCTCAGCACCGTGCCGTGGTTCAACTTTGTCAACCACAACCAGCA
CGGCGTCGACACGGCCAAGTATTACCAGCAGGCCGAGCGGGAGCTGGAGGCAGAGCGGGCGGTCAAGGGCTCGTG
A

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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