© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7162 |
| Gene name | |
| Location | Contig_40:49816..51205 |
| Strand | - |
| Gene length (bp) | 1389 |
| Transcript length (bp) | 1287 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular|Endoplasmic reticulum | Signal peptide | 0.1777 | 0.1757 | 0.8035 | 0.1446 | 0.2084 | 0.0673 | 0.6709 | 0.4606 | 0.5335 | 0.006 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7106 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|7162 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7162 MALHGHLGGFKTTILILACSILFGFSWASRSYNPPTPLSSLSSKPTDDDGGSTQDVGAYEGYAATTAKDDDDLRA KDEHGHPRGSRSASIPVGGGGGEEIAVYETNTSSTRHIQHVFIVLHGKRRDGGRYWTIMDEAVRSARSQDVAGAD RHTLVVAPRFFSALFDDGLYTGRQLAWADLNAWQAGMRASHPPGTRQTAIDALSALVEAYSNRAAYPSVANVTVV GHGGGGQLAQRFAAVAKEPPPHVHVRYIHGDPSTSAYFTPDRPAKGEELASCPSYNVWRYGFDSFDSATGEEGTP REYFSRYISRDVVSLVGLEDVEANGDQSCMARVQGGERRRDRNLAWYKYVNVLAGTDRDLRGFPGHFGPLPDWSE LSNRTINMRLIVVQNASHDGERLFESPDGRSALFYDGRLQRGWRPSRDRVYHG* |
| Coding | >Hirsu2|7162 ATGGCCCTTCATGGCCACCTCGGCGGTTTCAAGACCACGATCCTGATTCTGGCCTGCTCCATCTTGTTTGGTTTC TCTTGGGCCAGCCGCAGCTACAATCCTCCAACTCCGCTCTCATCGCTTTCGTCCAAACCGACCGACGATGACGGC GGATCGACTCAGGATGTAGGCGCCTACGAAGGCTATGCCGCCACAACCGCCAAAGACGACGACGACCTCAGGGCA AAGGATGAACACGGGCACCCCAGGGGCTCGCGGTCTGCTTCCATCCCCGTCGGCGGTGGCGGCGGCGAGGAAATC GCCGTCTACGAAACAAACACGTCGTCGACCCGGCACATCCAGCACGTCTTCATCGTGCTCCATGGCAAGCGCCGC GACGGAGGCCGGTACTGGACCATAATGGACGAGGCCGTCCGAAGCGCCCGCAGCCAGGACGTGGCCGGGGCGGAC CGGCACACCCTCGTCGTCGCCCCGCGCTTCTTCTCCGCCCTGTTCGACGACGGCCTGTACACCGGCCGACAGCTC GCCTGGGCCGACCTCAACGCCTGGCAGGCCGGGATGCGGGCCAGCCACCCACCGGGCACGCGGCAGACGGCCATC GACGCCCTGAGCGCCCTGGTCGAGGCCTACTCGAACCGCGCGGCCTACCCCAGCGTCGCCAACGTCACCGTCGTC GGCCACGGCGGAGGCGGCCAGCTGGCCCAGCGGTTCGCGGCCGTGGCCAAGGAGCCGCCGCCTCACGTCCATGTC CGCTACATCCACGGCGACCCGTCCACCTCGGCCTACTTCACCCCCGACCGGCCGGCCAAGGGGGAGGAGCTGGCC TCGTGTCCGTCCTACAACGTCTGGCGCTACGGCTTCGACAGCTTTGACAGCGCGACGGGCGAGGAGGGGACGCCG CGCGAGTACTTCAGCCGCTACATCAGCCGCGACGTCGTCTCGCTCGTCGGCCTCGAGGACGTCGAGGCCAACGGG GACCAGTCGTGCATGGCCCGGGTGCAGGGCGGCGAGAGGCGGCGCGACCGCAACCTGGCCTGGTATAAATACGTC AACGTGCTGGCTGGCACCGACAGAGACCTGCGCGGCTTCCCGGGCCACTTCGGCCCTCTGCCAGACTGGTCTGAG CTCTCCAACCGCACCATCAACATGCGCCTGATCGTCGTCCAGAACGCCAGCCACGACGGCGAGCGGCTGTTCGAG AGCCCCGACGGTCGGTCGGCACTCTTCTACGACGGCCGTCTCCAGCGAGGCTGGAGACCGTCCCGAGACCGTGTC TATCATGGGTGA |
| Transcript | >Hirsu2|7162 ATGGCCCTTCATGGCCACCTCGGCGGTTTCAAGACCACGATCCTGATTCTGGCCTGCTCCATCTTGTTTGGTTTC TCTTGGGCCAGCCGCAGCTACAATCCTCCAACTCCGCTCTCATCGCTTTCGTCCAAACCGACCGACGATGACGGC GGATCGACTCAGGATGTAGGCGCCTACGAAGGCTATGCCGCCACAACCGCCAAAGACGACGACGACCTCAGGGCA AAGGATGAACACGGGCACCCCAGGGGCTCGCGGTCTGCTTCCATCCCCGTCGGCGGTGGCGGCGGCGAGGAAATC GCCGTCTACGAAACAAACACGTCGTCGACCCGGCACATCCAGCACGTCTTCATCGTGCTCCATGGCAAGCGCCGC GACGGAGGCCGGTACTGGACCATAATGGACGAGGCCGTCCGAAGCGCCCGCAGCCAGGACGTGGCCGGGGCGGAC CGGCACACCCTCGTCGTCGCCCCGCGCTTCTTCTCCGCCCTGTTCGACGACGGCCTGTACACCGGCCGACAGCTC GCCTGGGCCGACCTCAACGCCTGGCAGGCCGGGATGCGGGCCAGCCACCCACCGGGCACGCGGCAGACGGCCATC GACGCCCTGAGCGCCCTGGTCGAGGCCTACTCGAACCGCGCGGCCTACCCCAGCGTCGCCAACGTCACCGTCGTC GGCCACGGCGGAGGCGGCCAGCTGGCCCAGCGGTTCGCGGCCGTGGCCAAGGAGCCGCCGCCTCACGTCCATGTC CGCTACATCCACGGCGACCCGTCCACCTCGGCCTACTTCACCCCCGACCGGCCGGCCAAGGGGGAGGAGCTGGCC TCGTGTCCGTCCTACAACGTCTGGCGCTACGGCTTCGACAGCTTTGACAGCGCGACGGGCGAGGAGGGGACGCCG CGCGAGTACTTCAGCCGCTACATCAGCCGCGACGTCGTCTCGCTCGTCGGCCTCGAGGACGTCGAGGCCAACGGG GACCAGTCGTGCATGGCCCGGGTGCAGGGCGGCGAGAGGCGGCGCGACCGCAACCTGGCCTGGTATAAATACGTC AACGTGCTGGCTGGCACCGACAGAGACCTGCGCGGCTTCCCGGGCCACTTCGGCCCTCTGCCAGACTGGTCTGAG CTCTCCAACCGCACCATCAACATGCGCCTGATCGTCGTCCAGAACGCCAGCCACGACGGCGAGCGGCTGTTCGAG AGCCCCGACGGTCGGTCGGCACTCTTCTACGACGGCCGTCTCCAGCGAGGCTGGAGACCGTCCCGAGACCGTGTC TATCATGGGTGA |
| Gene | >Hirsu2|7162 ATGGCCCTTCATGGCCACCTCGGCGGTTTCAAGACCACGATCCTGATTCTGGCCTGCTCCATCTTGTTTGGTTTC TCTTGGGCCAGCCGCAGCTACAATCCTCCAACTCCGCTCTCATCGCTTTCGTCCAAACCGACCGACGATGACGGC GGATCGACTCAGGATGTAGGCGCCTACGAAGGCTATGCCGCCACAACCGCCAAAGACGACGACGACCTCAGGGTA AGTCGAACCACACAGGCACAGAAGGGGGAACAAGCGTGTCGGTTGCAGTCGTTTACTCTCTCCCTTCCACTCTCG TGTCTGCCCGCCGCGCGTACATAGGCAAAGGATGAACACGGGCACCCCAGGGGCTCGCGGTCTGCTTCCATCCCC GTCGGCGGTGGCGGCGGCGAGGAAATCGCCGTCTACGAAACAAACACGTCGTCGACCCGGCACATCCAGCACGTC TTCATCGTGCTCCATGGCAAGCGCCGCGACGGAGGCCGGTACTGGACCATAATGGACGAGGCCGTCCGAAGCGCC CGCAGCCAGGACGTGGCCGGGGCGGACCGGCACACCCTCGTCGTCGCCCCGCGCTTCTTCTCCGCCCTGTTCGAC GACGGCCTGTACACCGGCCGACAGCTCGCCTGGGCCGACCTCAACGCCTGGCAGGCCGGGATGCGGGCCAGCCAC CCACCGGGCACGCGGCAGACGGCCATCGACGCCCTGAGCGCCCTGGTCGAGGCCTACTCGAACCGCGCGGCCTAC CCCAGCGTCGCCAACGTCACCGTCGTCGGCCACGGCGGAGGCGGCCAGCTGGCCCAGCGGTTCGCGGCCGTGGCC AAGGAGCCGCCGCCTCACGTCCATGTCCGCTACATCCACGGCGACCCGTCCACCTCGGCCTACTTCACCCCCGAC CGGCCGGCCAAGGGGGAGGAGCTGGCCTCGTGTCCGTCCTACAACGTCTGGCGCTACGGCTTCGACAGCTTTGAC AGCGCGACGGGCGAGGAGGGGACGCCGCGCGAGTACTTCAGCCGCTACATCAGCCGCGACGTCGTCTCGCTCGTC GGCCTCGAGGACGTCGAGGCCAACGGGGACCAGTCGTGCATGGCCCGGGTGCAGGGCGGCGAGAGGCGGCGCGAC CGCAACCTGGCCTGGTATAAATACGTCAACGTGCTGGCTGGCACCGACAGAGACCTGCGCGGCTTCCCGGGCCAC TTCGGCCCTCTGCCAGACTGGTCTGAGCTCTCCAACCGCACCATCAACATGCGCCTGATCGTCGTCCAGAACGCC AGCCACGACGGCGAGCGGCTGTTCGAGAGCCCCGACGGTCGGTCGGCACTCTTCTACGACGGCCGTCTCCAGCGA GGCTGGAGACCGTCCCGAGACCGTGTCTATCATGGGTGA |