© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7124 |
| Gene name | |
| Location | Contig_4:31508..33393 |
| Strand | - |
| Gene length (bp) | 1885 |
| Transcript length (bp) | 1767 |
| Coding sequence length (bp) | 1767 |
| Protein length (aa) | 589 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04113 | Gpi16 | Gpi16 subunit, GPI transamidase component | 1.7E-238 | 8 | 577 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38875|GPI16_YEAST | GPI transamidase component GPI16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI16 PE=1 SV=2 | 22 | 570 | 2.0E-120 |
| sp|O94380|GPI16_SCHPO | GPI transamidase component PIG-T homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi16 PE=3 SV=1 | 60 | 558 | 6.0E-94 |
| sp|Q969N2|PIGT_HUMAN | GPI transamidase component PIG-T OS=Homo sapiens GN=PIGT PE=1 SV=1 | 24 | 581 | 1.0E-83 |
| sp|Q8BXQ2|PIGT_MOUSE | GPI transamidase component PIG-T OS=Mus musculus GN=Pigt PE=1 SV=2 | 24 | 581 | 2.0E-83 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016255 | attachment of GPI anchor to protein | Yes |
| GO:0042765 | GPI-anchor transamidase complex | Yes |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008303 | caspase complex | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1905369 | endopeptidase complex | No |
| GO:1905368 | peptidase complex | No |
| GO:1902494 | catalytic complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0036211 | protein modification process | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1222 | 0.0888 | 0.0436 | 0.172 | 0.0993 | 0.008 | 0.9247 | 0.2962 | 0.4233 | 0.0784 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.99974 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 532 | 554 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3683 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7124 MRQLLTVLLLSLVPSFVAAAEYHEQLTLRPLPLSALLASFNFRSNTSIADFEAHNFRLFPRSLGQILQYAGTQEL HLRFTLGRWDAERWGARPWGGTREGGTGVELWAWLDARTEEEADENWLTLTNALSGLFCASLNFIDGTRTIRPVM SFQPEGHHSDDALASTRLLHGVLPHEVVCTENLTPFLKLLPCKGKAGIASLLDGHKLFDASFQSMAIDVRPVCVP GNPCVLQMEQTIDMVLDVHRSKRPRDNPIPRPPPSQDLVCDTSKPYHDSATCFPADHLHGQDWVLSDIFGRTMKG VCPLTDRETAPICLQVPDSRGVFAAGGDRARDVKEQGGSTRCYRPESDSSEFNLVLAKPEGDVAAVAMDIVEPET PLLYAERSFMGHGQEHGGVQAILTNPSETEVEFVYMESLPWFMRIYLHTLSTRISSSSSATNASSKIVEEIYYRP ALDRARGTQLELLMRIPPRCTVFLTYDFEKSILRYTEYPPDANRGFDVAAAVISTRAPRAGLNVRTTSLLLYLPT PDFSMPYNVIIFTSTAIALTFGGLYNILVRRLVGADEAPSAMLKTKVARLLSTFRGRRKAAQS* |
| Coding | >Hirsu2|7124 ATGCGCCAACTACTGACCGTTCTCCTCCTCTCGCTCGTCCCCAGTTTCGTCGCAGCCGCCGAATACCACGAGCAA CTCACTCTCCGACCTCTACCGCTCTCTGCCCTGCTCGCGAGTTTCAACTTCCGATCCAATACGTCCATCGCCGAC TTTGAGGCGCACAACTTCCGCCTCTTTCCGCGGTCCCTGGGCCAGATCCTGCAGTATGCCGGGACGCAAGAGCTG CATCTCAGATTTACCCTCGGCCGCTGGGACGCAGAGAGATGGGGTGCGAGGCCGTGGGGAGGCACGCGAGAAGGC GGCACGGGCGTAGAGCTGTGGGCCTGGCTGGATGCCCGGACAGAAGAGGAGGCAGACGAGAATTGGCTGACGCTG ACCAACGCCCTCTCCGGACTCTTCTGCGCCTCTCTCAACTTCATAGACGGCACGCGTACCATCCGACCCGTCATG TCGTTCCAACCCGAGGGCCATCATTCGGACGATGCCCTGGCTAGCACCAGGCTTCTTCACGGAGTCTTGCCGCAC GAGGTGGTTTGCACGGAGAACTTGACGCCCTTTCTGAAGCTCCTGCCTTGCAAGGGCAAAGCAGGCATCGCCAGT CTGCTCGACGGGCACAAGCTATTTGACGCATCCTTCCAAAGCATGGCCATCGACGTGAGACCCGTCTGCGTTCCC GGCAACCCCTGTGTCTTGCAGATGGAACAGACGATCGATATGGTGTTGGACGTGCACCGATCTAAGCGACCTCGG GATAACCCCATTCCGCGTCCACCGCCCAGCCAGGATCTAGTCTGCGACACGTCCAAGCCATATCACGACAGCGCA ACTTGTTTCCCTGCCGACCACCTGCATGGTCAGGACTGGGTTCTATCGGACATCTTTGGGCGCACGATGAAAGGC GTTTGTCCCTTGACCGATAGGGAGACCGCACCCATCTGCCTGCAAGTCCCCGATTCACGCGGCGTCTTCGCCGCA GGGGGCGATCGCGCCCGTGATGTCAAAGAGCAGGGCGGTTCAACGCGCTGCTACAGGCCCGAGTCGGACAGCAGC GAATTCAACCTCGTGTTGGCCAAACCGGAGGGGGATGTGGCTGCTGTAGCCATGGATATTGTCGAGCCGGAGACG CCACTTCTGTACGCCGAGCGCAGCTTCATGGGCCACGGCCAAGAGCACGGCGGCGTCCAGGCCATTCTCACTAAT CCCAGCGAGACCGAAGTCGAGTTTGTCTACATGGAATCACTCCCCTGGTTCATGCGCATCTACCTTCACACGCTC TCGACGCGCATCTCCTCGTCATCGTCGGCGACAAACGCCTCGTCGAAGATCGTCGAGGAAATCTACTATCGGCCG GCCCTGGACCGCGCCCGTGGCACCCAGCTTGAGCTTCTGATGCGCATCCCGCCGCGTTGCACCGTCTTCCTCACC TACGACTTCGAGAAGTCCATCTTACGCTACACTGAGTACCCGCCGGACGCCAACCGCGGCTTTGATGTGGCGGCG GCCGTCATTTCCACCCGTGCCCCGCGCGCCGGTCTGAACGTGCGCACAACGAGCTTACTGCTGTACCTGCCGACA CCAGACTTCAGCATGCCGTACAATGTCATCATCTTCACATCGACTGCCATTGCGCTAACGTTTGGCGGTCTGTAT AATATCCTTGTCAGACGCCTGGTGGGCGCGGATGAGGCTCCGAGCGCCATGCTCAAGACCAAGGTGGCGAGGCTA TTGAGCACATTCAGGGGCAGACGCAAGGCGGCACAATCATAG |
| Transcript | >Hirsu2|7124 ATGCGCCAACTACTGACCGTTCTCCTCCTCTCGCTCGTCCCCAGTTTCGTCGCAGCCGCCGAATACCACGAGCAA CTCACTCTCCGACCTCTACCGCTCTCTGCCCTGCTCGCGAGTTTCAACTTCCGATCCAATACGTCCATCGCCGAC TTTGAGGCGCACAACTTCCGCCTCTTTCCGCGGTCCCTGGGCCAGATCCTGCAGTATGCCGGGACGCAAGAGCTG CATCTCAGATTTACCCTCGGCCGCTGGGACGCAGAGAGATGGGGTGCGAGGCCGTGGGGAGGCACGCGAGAAGGC GGCACGGGCGTAGAGCTGTGGGCCTGGCTGGATGCCCGGACAGAAGAGGAGGCAGACGAGAATTGGCTGACGCTG ACCAACGCCCTCTCCGGACTCTTCTGCGCCTCTCTCAACTTCATAGACGGCACGCGTACCATCCGACCCGTCATG TCGTTCCAACCCGAGGGCCATCATTCGGACGATGCCCTGGCTAGCACCAGGCTTCTTCACGGAGTCTTGCCGCAC GAGGTGGTTTGCACGGAGAACTTGACGCCCTTTCTGAAGCTCCTGCCTTGCAAGGGCAAAGCAGGCATCGCCAGT CTGCTCGACGGGCACAAGCTATTTGACGCATCCTTCCAAAGCATGGCCATCGACGTGAGACCCGTCTGCGTTCCC GGCAACCCCTGTGTCTTGCAGATGGAACAGACGATCGATATGGTGTTGGACGTGCACCGATCTAAGCGACCTCGG GATAACCCCATTCCGCGTCCACCGCCCAGCCAGGATCTAGTCTGCGACACGTCCAAGCCATATCACGACAGCGCA ACTTGTTTCCCTGCCGACCACCTGCATGGTCAGGACTGGGTTCTATCGGACATCTTTGGGCGCACGATGAAAGGC GTTTGTCCCTTGACCGATAGGGAGACCGCACCCATCTGCCTGCAAGTCCCCGATTCACGCGGCGTCTTCGCCGCA GGGGGCGATCGCGCCCGTGATGTCAAAGAGCAGGGCGGTTCAACGCGCTGCTACAGGCCCGAGTCGGACAGCAGC GAATTCAACCTCGTGTTGGCCAAACCGGAGGGGGATGTGGCTGCTGTAGCCATGGATATTGTCGAGCCGGAGACG CCACTTCTGTACGCCGAGCGCAGCTTCATGGGCCACGGCCAAGAGCACGGCGGCGTCCAGGCCATTCTCACTAAT CCCAGCGAGACCGAAGTCGAGTTTGTCTACATGGAATCACTCCCCTGGTTCATGCGCATCTACCTTCACACGCTC TCGACGCGCATCTCCTCGTCATCGTCGGCGACAAACGCCTCGTCGAAGATCGTCGAGGAAATCTACTATCGGCCG GCCCTGGACCGCGCCCGTGGCACCCAGCTTGAGCTTCTGATGCGCATCCCGCCGCGTTGCACCGTCTTCCTCACC TACGACTTCGAGAAGTCCATCTTACGCTACACTGAGTACCCGCCGGACGCCAACCGCGGCTTTGATGTGGCGGCG GCCGTCATTTCCACCCGTGCCCCGCGCGCCGGTCTGAACGTGCGCACAACGAGCTTACTGCTGTACCTGCCGACA CCAGACTTCAGCATGCCGTACAATGTCATCATCTTCACATCGACTGCCATTGCGCTAACGTTTGGCGGTCTGTAT AATATCCTTGTCAGACGCCTGGTGGGCGCGGATGAGGCTCCGAGCGCCATGCTCAAGACCAAGGTGGCGAGGCTA TTGAGCACATTCAGGGGCAGACGCAAGGCGGCACAATCATAG |
| Gene | >Hirsu2|7124 ATGCGCCAACTACTGACCGTTCTCCTCCTCTCGCTCGTCCCCAGTTTCGTCGCAGCCGCCGAATACCACGAGCAA CTCACTCTCCGACCTCTACCGCTCTCTGCCCTGCTCGCGAGTTTCAACTTCCGATCCAATACGTCCATCGCCGAC TTTGAGGCGCACAACTTCCGCCTCTTTCCGCGGTCCCTGGGCCAGATCCTGCAGTATGCCGGGACGCAAGAGCTG CATCTCAGATTTACCCTCGGCCGCTGGGACGCAGAGAGATGGGGTGCGAGGCCGTGGGGAGGCACGCGAGAAGGC GGCACGGGCGTAGAGCTGTGGGCCTGGCTGGATGCCCGGACAGAAGAGGAGGCAGACGAGAATTGGCTGACGCTG ACCAACGCCCTCTCCGGACTCTTCTGCGCCTCTCTCAACTTCATAGACGGCACGCGTACCATCCGACCCGTCATG TCGTTCCAACCCGAGGGCCATCATTCGGACGATGCCCTGGCTAGCACCAGGCTTCTTCACGGAGTCTTGCCGCAC GAGGTGGTTTGCACGGAGAACTTGACGCCCTTTCTGAAGCTCCTGCCTTGCAAGGGCAAAGCAGGCATCGCCAGT CTGCTCGACGGGCACAAGCTATTTGACGCATCCTTCCAAAGCATGGCCATCGACGTGAGACCCGTCTGCGTTCCC GGCAACCCCTGTGTCTTGCAGATGGAACAGACGATCGATATGGTGTTGGACGTGCACCGATCTAAGCGACCTCGG GGTATGTTGCTTCTTCTCTGTGTAAAACCTATAATGCGGATGCCTTGCGGCTGCAAAAGATAAGAACGAGGCTCT GGAGCGACAGGATGAAGTCGGTACTGACCCAGTCGTGATTCCAGATAACCCCATTCCGCGTCCACCGCCCAGCCA GGATCTAGTCTGCGACACGTCCAAGCCATATCACGACAGCGCAACTTGTTTCCCTGCCGACCACCTGCATGGTCA GGACTGGGTTCTATCGGACATCTTTGGGCGCACGATGAAAGGCGTTTGTCCCTTGACCGATAGGGAGACCGCACC CATCTGCCTGCAAGTCCCCGATTCACGCGGCGTCTTCGCCGCAGGGGGCGATCGCGCCCGTGATGTCAAAGAGCA GGGCGGTTCAACGCGCTGCTACAGGCCCGAGTCGGACAGCAGCGAATTCAACCTCGTGTTGGCCAAACCGGAGGG GGATGTGGCTGCTGTAGCCATGGATATTGTCGAGCCGGAGACGCCACTTCTGTACGCCGAGCGCAGCTTCATGGG CCACGGCCAAGAGCACGGCGGCGTCCAGGCCATTCTCACTAATCCCAGCGAGACCGAAGTCGAGTTTGTCTACAT GGAATCACTCCCCTGGTTCATGCGCATCTACCTTCACACGCTCTCGACGCGCATCTCCTCGTCATCGTCGGCGAC AAACGCCTCGTCGAAGATCGTCGAGGAAATCTACTATCGGCCGGCCCTGGACCGCGCCCGTGGCACCCAGCTTGA GCTTCTGATGCGCATCCCGCCGCGTTGCACCGTCTTCCTCACCTACGACTTCGAGAAGTCCATCTTACGCTACAC TGAGTACCCGCCGGACGCCAACCGCGGCTTTGATGTGGCGGCGGCCGTCATTTCCACCCGTGCCCCGCGCGCCGG TCTGAACGTGCGCACAACGAGCTTACTGCTGTACCTGCCGACACCAGACTTCAGCATGCCGTACAATGTCATCAT CTTCACATCGACTGCCATTGCGCTAACGTTTGGCGGTCTGTATAATATCCTTGTCAGACGCCTGGTGGGCGCGGA TGAGGCTCCGAGCGCCATGCTCAAGACCAAGGTGGCGAGGCTATTGAGCACATTCAGGGGCAGACGCAAGGCGGC ACAATCATAG |