Protein ID | Hirsu2|7118 |
Gene name | |
Location | Contig_4:17494..18952 |
Strand | - |
Gene length (bp) | 1458 |
Transcript length (bp) | 1404 |
Coding sequence length (bp) | 1404 |
Protein length (aa) | 468 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05346 | DUF747 | Eukaryotic membrane protein family | 2.0E-114 | 2 | 385 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O60067|TAPT1_SCHPO | Endoplasmic reticulum membrane protein 65 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.05 PE=1 SV=1 | 3 | 467 | 1.0E-85 |
sp|Q550C1|TAPT1_DICDI | Protein TAPT1 homolog OS=Dictyostelium discoideum GN=DDB_G0277313 PE=3 SV=2 | 3 | 283 | 2.0E-55 |
sp|Q5EAY8|TAPT1_XENLA | Transmembrane anterior posterior transformation protein 1 homolog OS=Xenopus laevis GN=tapt1 PE=2 SV=1 | 3 | 270 | 3.0E-49 |
sp|Q4VBD2|TAPT1_MOUSE | Transmembrane anterior posterior transformation protein 1 OS=Mus musculus GN=Tapt1 PE=1 SV=2 | 3 | 271 | 4.0E-49 |
sp|Q5ZLG8|TAPT1_CHICK | Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus GN=TAPT1 PE=2 SV=2 | 3 | 270 | 4.0E-49 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O60067|TAPT1_SCHPO | Endoplasmic reticulum membrane protein 65 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.05 PE=1 SV=1 | 3 | 467 | 1.0E-85 |
sp|Q550C1|TAPT1_DICDI | Protein TAPT1 homolog OS=Dictyostelium discoideum GN=DDB_G0277313 PE=3 SV=2 | 3 | 283 | 2.0E-55 |
sp|Q5EAY8|TAPT1_XENLA | Transmembrane anterior posterior transformation protein 1 homolog OS=Xenopus laevis GN=tapt1 PE=2 SV=1 | 3 | 270 | 3.0E-49 |
sp|Q4VBD2|TAPT1_MOUSE | Transmembrane anterior posterior transformation protein 1 OS=Mus musculus GN=Tapt1 PE=1 SV=2 | 3 | 271 | 4.0E-49 |
sp|Q5ZLG8|TAPT1_CHICK | Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus GN=TAPT1 PE=2 SV=2 | 3 | 270 | 4.0E-49 |
sp|P40085|TAPT1_YEAST | Endoplasmic reticulum membrane protein 65 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP65 PE=1 SV=1 | 3 | 269 | 6.0E-49 |
sp|Q6NXT6|TAPT1_HUMAN | Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens GN=TAPT1 PE=1 SV=1 | 3 | 271 | 7.0E-49 |
sp|A2BIE7|TAPT1_DANRE | Transmembrane anterior posterior transformation protein 1 homolog OS=Danio rerio GN=tapt1 PE=3 SV=1 | 3 | 259 | 2.0E-46 |
sp|Q9VED0|TAPT1_DROME | Protein TAPT1 homolog OS=Drosophila melanogaster GN=CG7218 PE=2 SV=2 | 3 | 271 | 6.0E-46 |
sp|Q9U3H8|TAPT1_CAEEL | Protein TAPT1 homolog OS=Caenorhabditis elegans GN=F26F2.7 PE=3 SV=1 | 3 | 276 | 8.0E-43 |
sp|F4HVJ3|POD1_ARATH | Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1 | 4 | 289 | 4.0E-37 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0974 | 0.078 | 0.1026 | 0.5118 | 0.2177 | 0.0103 | 0.8392 | 0.6021 | 0.4578 | 0.0827 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 61 | 83 | 22 |
2 | 356 | 378 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3681 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7118 MTLDASRMYHFVRAQSAIKLYVIYNILEVGDRLLSAIGQDILECLFSTETLSRNPSGRSKIFLPLTMFLLALAYN CLHSIALYYQVITLNVAVNSYSNALLTLLLSNQFVEIKSTVFKRFEKDNLFQLTCADIVERFQLWVMLLIIGMRN VVEVGGLSVPGAGVESTYEDGTGATPLHPPSILPHSFTVLPSWIMSGEVLSPFLIVVGSEMLVDAIKHAYVTKFN NIKPTFYSRTLDILCKDYYTNAFTTPALTRRLGLAVIPLSCLFIRASVQTYHMFLSTQIPTPMPPSTQTSLSEES ATPSSPAMMAALSRFDALLRDSLGRATYGYPYGSPLNSRSWYSWTSDDMIAALTMVVVFFMVFLVLLIVKLLLGM ALLQYSRNRYAKMKRREKMVSLGQTEHESHEARGSRYGARPEIEVGEERKRWINADPTEGLPSAKRQTGDTKKAE GDYQGVFRFEMVAKRIW* |
Coding | >Hirsu2|7118 ATGACGCTCGACGCGAGCCGCATGTATCACTTCGTGCGGGCGCAGTCGGCCATCAAACTCTACGTCATCTACAAT ATTCTCGAGGTGGGCGACCGCCTCCTGTCGGCCATCGGCCAGGACATCCTCGAATGTCTTTTCAGCACCGAGACG CTGTCGCGCAACCCGTCCGGCCGGTCCAAGATCTTCCTGCCGCTCACCATGTTCCTGCTCGCCCTGGCCTATAAC TGCCTGCACTCCATAGCCCTGTACTACCAGGTGATCACGCTCAACGTGGCGGTCAACTCGTACTCGAACGCCCTC CTGACCCTGCTCCTCTCCAATCAGTTTGTCGAGATCAAAAGTACCGTCTTCAAGCGCTTCGAGAAGGACAACCTG TTCCAGCTGACGTGTGCCGACATTGTGGAGCGGTTCCAGCTTTGGGTCATGCTTCTCATCATCGGCATGCGGAAC GTTGTCGAGGTTGGGGGCCTCTCCGTACCGGGCGCGGGGGTCGAGTCGACGTACGAAGACGGCACGGGCGCGACG CCGCTTCACCCGCCCTCTATCTTGCCGCACAGCTTCACCGTGCTGCCGTCGTGGATCATGTCGGGCGAGGTCCTG TCGCCCTTCCTCATCGTCGTGGGCAGTGAGATGCTCGTCGACGCCATCAAGCACGCATACGTGACCAAGTTTAAC AACATCAAGCCCACGTTCTACAGCAGGACGCTTGACATCCTGTGCAAGGACTATTACACGAATGCATTCACCACG CCGGCCTTGACCCGGCGACTGGGCCTCGCCGTGATACCCCTGTCTTGCCTCTTCATCCGGGCATCGGTCCAGACC TACCACATGTTCTTGTCCACACAGATTCCGACACCCATGCCGCCGTCGACCCAGACGTCGTTGAGTGAAGAGTCC GCGACTCCGTCGTCGCCCGCCATGATGGCCGCGCTTAGCCGGTTCGACGCCCTCCTGCGGGACTCGTTGGGACGT GCCACGTACGGCTACCCGTACGGATCGCCCCTCAACTCGCGGTCCTGGTACTCTTGGACGTCGGATGACATGATT GCCGCCCTCACCATGGTTGTCGTCTTCTTCATGGTCTTCCTCGTCCTCCTCATCGTGAAGCTACTGTTGGGCATG GCCCTCCTACAGTACTCGCGTAACAGATACGCAAAGATGAAGCGGAGGGAGAAGATGGTATCCCTCGGGCAGACG GAACACGAGTCGCACGAGGCGCGCGGCAGCCGATACGGTGCCCGGCCCGAGATCGAGGTCGGGGAAGAGCGGAAG CGCTGGATCAATGCGGACCCGACCGAGGGCCTGCCGAGCGCTAAGCGGCAGACCGGCGACACGAAGAAAGCCGAG GGGGACTACCAGGGCGTGTTCCGATTCGAAATGGTGGCGAAGCGGATATGGTAG |
Transcript | >Hirsu2|7118 ATGACGCTCGACGCGAGCCGCATGTATCACTTCGTGCGGGCGCAGTCGGCCATCAAACTCTACGTCATCTACAAT ATTCTCGAGGTGGGCGACCGCCTCCTGTCGGCCATCGGCCAGGACATCCTCGAATGTCTTTTCAGCACCGAGACG CTGTCGCGCAACCCGTCCGGCCGGTCCAAGATCTTCCTGCCGCTCACCATGTTCCTGCTCGCCCTGGCCTATAAC TGCCTGCACTCCATAGCCCTGTACTACCAGGTGATCACGCTCAACGTGGCGGTCAACTCGTACTCGAACGCCCTC CTGACCCTGCTCCTCTCCAATCAGTTTGTCGAGATCAAAAGTACCGTCTTCAAGCGCTTCGAGAAGGACAACCTG TTCCAGCTGACGTGTGCCGACATTGTGGAGCGGTTCCAGCTTTGGGTCATGCTTCTCATCATCGGCATGCGGAAC GTTGTCGAGGTTGGGGGCCTCTCCGTACCGGGCGCGGGGGTCGAGTCGACGTACGAAGACGGCACGGGCGCGACG CCGCTTCACCCGCCCTCTATCTTGCCGCACAGCTTCACCGTGCTGCCGTCGTGGATCATGTCGGGCGAGGTCCTG TCGCCCTTCCTCATCGTCGTGGGCAGTGAGATGCTCGTCGACGCCATCAAGCACGCATACGTGACCAAGTTTAAC AACATCAAGCCCACGTTCTACAGCAGGACGCTTGACATCCTGTGCAAGGACTATTACACGAATGCATTCACCACG CCGGCCTTGACCCGGCGACTGGGCCTCGCCGTGATACCCCTGTCTTGCCTCTTCATCCGGGCATCGGTCCAGACC TACCACATGTTCTTGTCCACACAGATTCCGACACCCATGCCGCCGTCGACCCAGACGTCGTTGAGTGAAGAGTCC GCGACTCCGTCGTCGCCCGCCATGATGGCCGCGCTTAGCCGGTTCGACGCCCTCCTGCGGGACTCGTTGGGACGT GCCACGTACGGCTACCCGTACGGATCGCCCCTCAACTCGCGGTCCTGGTACTCTTGGACGTCGGATGACATGATT GCCGCCCTCACCATGGTTGTCGTCTTCTTCATGGTCTTCCTCGTCCTCCTCATCGTGAAGCTACTGTTGGGCATG GCCCTCCTACAGTACTCGCGTAACAGATACGCAAAGATGAAGCGGAGGGAGAAGATGGTATCCCTCGGGCAGACG GAACACGAGTCGCACGAGGCGCGCGGCAGCCGATACGGTGCCCGGCCCGAGATCGAGGTCGGGGAAGAGCGGAAG CGCTGGATCAATGCGGACCCGACCGAGGGCCTGCCGAGCGCTAAGCGGCAGACCGGCGACACGAAGAAAGCCGAG GGGGACTACCAGGGCGTGTTCCGATTCGAAATGGTGGCGAAGCGGATATGGTAG |
Gene | >Hirsu2|7118 ATGACGCTCGACGCGAGCCGCATGTATCACTTCGTGCGGGCGCAGTCGGCCATCAAACTCTACGTCATCTACAAT ATTCTCGAGGTGGGCGACCGCCTCCTGTCGGCCATCGGCCAGGACATCCTCGAATGTCTTTTCAGCACCGAGACG CTGTCGCGCAACCCGTCCGGCCGGTCCAAGATCTTCCTGCCGCTCACCATGTTCCTGCTCGCCCTGGCCTATAAC TGCCTGCACTCCATAGCCCTGTACTACCAGGTGATCACGCTCAACGTGGCGGTCAACTCGTACTCGAACGCCCTC CTGACCCTGCTCCTCTCCAATCAGTTTGTCGAGATCAAAAGTACCGTCTTCAAGCGCTTCGAGAAGGACAACCTG TTCCAGCTGACGTGTGCCGACATTGTGGAGCGGTTCCAGCTTTGGGTCATGCTTCTCATCATCGGCATGCGGAAC GTTGTCGAGGTTGGGGGCCTCTCCGTACCGGGCGCGGGGGTCGAGTCGACGTACGAAGACGGCACGGGCGCGACG CCGCTTCACCCGCCCTCTATCTTGCCGCACAGCTTCACCGTGCTGCCGTCGTGGATCATGTCGGGCGAGGTCCTG TCGCCCTTCCTCATCGTCGTGGGCAGTGAGATGCTCGTCGACGCCATCAAGCACGCATACGTGACCAAGTTTAAC AACATCAAGCCCACGTTCTACAGCAGGACGCTTGACATCCTGTGCAAGGACTATTACACGAATGTGAGTCGGCCG CCCCCAGCAATCCCATGCCTGCGCAGATCCTAACCGCGGCAGGCATTCACCACGCCGGCCTTGACCCGGCGACTG GGCCTCGCCGTGATACCCCTGTCTTGCCTCTTCATCCGGGCATCGGTCCAGACCTACCACATGTTCTTGTCCACA CAGATTCCGACACCCATGCCGCCGTCGACCCAGACGTCGTTGAGTGAAGAGTCCGCGACTCCGTCGTCGCCCGCC ATGATGGCCGCGCTTAGCCGGTTCGACGCCCTCCTGCGGGACTCGTTGGGACGTGCCACGTACGGCTACCCGTAC GGATCGCCCCTCAACTCGCGGTCCTGGTACTCTTGGACGTCGGATGACATGATTGCCGCCCTCACCATGGTTGTC GTCTTCTTCATGGTCTTCCTCGTCCTCCTCATCGTGAAGCTACTGTTGGGCATGGCCCTCCTACAGTACTCGCGT AACAGATACGCAAAGATGAAGCGGAGGGAGAAGATGGTATCCCTCGGGCAGACGGAACACGAGTCGCACGAGGCG CGCGGCAGCCGATACGGTGCCCGGCCCGAGATCGAGGTCGGGGAAGAGCGGAAGCGCTGGATCAATGCGGACCCG ACCGAGGGCCTGCCGAGCGCTAAGCGGCAGACCGGCGACACGAAGAAAGCCGAGGGGGACTACCAGGGCGTGTTC CGATTCGAAATGGTGGCGAAGCGGATATGGTAG |