© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7087 |
| Gene name | |
| Location | Contig_396:746..2294 |
| Strand | + |
| Gene length (bp) | 1548 |
| Transcript length (bp) | 1548 |
| Coding sequence length (bp) | 1548 |
| Protein length (aa) | 516 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 8.3E-78 | 123 | 509 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36062|AVT3_YEAST | Vacuolar amino acid transporter 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT3 PE=1 SV=1 | 31 | 514 | 5.0E-120 |
| sp|Q10074|AVT3_SCHPO | Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 | 13 | 510 | 2.0E-115 |
| sp|P50944|AVT4_YEAST | Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1 | 1 | 510 | 6.0E-93 |
| sp|Q4KL91|S36A4_XENLA | Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 | 83 | 513 | 9.0E-35 |
| sp|Q7Z2H8|S36A1_HUMAN | Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 | 77 | 514 | 9.0E-34 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36062|AVT3_YEAST | Vacuolar amino acid transporter 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT3 PE=1 SV=1 | 31 | 514 | 5.0E-120 |
| sp|Q10074|AVT3_SCHPO | Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 | 13 | 510 | 2.0E-115 |
| sp|P50944|AVT4_YEAST | Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1 | 1 | 510 | 6.0E-93 |
| sp|Q4KL91|S36A4_XENLA | Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 | 83 | 513 | 9.0E-35 |
| sp|Q7Z2H8|S36A1_HUMAN | Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 | 77 | 514 | 9.0E-34 |
| sp|F4ILY9|ANTL1_ARATH | Amino acid transporter ANTL1 OS=Arabidopsis thaliana GN=At2g42005 PE=2 SV=1 | 96 | 511 | 2.0E-31 |
| sp|Q495N2|S36A3_HUMAN | Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 | 94 | 511 | 2.0E-31 |
| sp|Q9SF09|ANT1_ARATH | Amino acid transporter ANT1 OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=1 | 92 | 509 | 5.0E-31 |
| sp|Q6YBV0|S36A4_HUMAN | Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 | 82 | 509 | 6.0E-31 |
| sp|Q8CH36|S36A4_MOUSE | Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 | 82 | 509 | 8.0E-31 |
| sp|Q8K4D3|S36A1_MOUSE | Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 | 89 | 514 | 2.0E-28 |
| sp|Q4V8B1|S36A3_RAT | Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 | 115 | 514 | 3.0E-28 |
| sp|Q811P0|S36A3_MOUSE | Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 | 119 | 514 | 4.0E-28 |
| sp|Q924A5|S36A1_RAT | Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 | 89 | 514 | 7.0E-28 |
| sp|Q8BHK3|S36A2_MOUSE | Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1 | 127 | 505 | 4.0E-27 |
| sp|Q495M3|S36A2_HUMAN | Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1 | 87 | 476 | 3.0E-26 |
| sp|Q8K415|S36A2_RAT | Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1 | 94 | 409 | 3.0E-26 |
| sp|Q9SVG0|ANTL2_ARATH | Amino acid transporter ANTL2 OS=Arabidopsis thaliana GN=At4g38250 PE=1 SV=1 | 123 | 505 | 9.0E-26 |
| sp|Q9FKY3|ANTL3_ARATH | Amino acid transporter ANTL3 OS=Arabidopsis thaliana GN=At5g65990 PE=2 SV=1 | 102 | 478 | 1.0E-24 |
| sp|Q503G8|S38A6_DANRE | Probable sodium-coupled neutral amino acid transporter 6 OS=Danio rerio GN=slc38a6 PE=2 SV=1 | 88 | 514 | 3.0E-14 |
| sp|Q99624|S38A3_HUMAN | Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=1 SV=1 | 94 | 512 | 1.0E-12 |
| sp|Q5SPB1|S38A2_DANRE | Sodium-coupled neutral amino acid transporter 2 OS=Danio rerio GN=slc38a2 PE=3 SV=1 | 91 | 515 | 2.0E-12 |
| sp|Q9DCP2|S38A3_MOUSE | Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 | 121 | 513 | 1.0E-11 |
| sp|Q9JHZ9|S38A3_RAT | Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1 | 78 | 513 | 1.0E-11 |
| sp|Q6DEL1|S38A7_DANRE | Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1 | 85 | 508 | 6.0E-11 |
| sp|Q6WWW3|S38A6_RAT | Probable sodium-coupled neutral amino acid transporter 6 OS=Rattus norvegicus GN=Slc38a6 PE=2 SV=1 | 92 | 514 | 1.0E-09 |
| sp|G3UVW3|S38A6_MOUSE | Probable sodium-coupled neutral amino acid transporter 6 OS=Mus musculus GN=Slc38a6 PE=2 SV=1 | 98 | 514 | 2.0E-09 |
| sp|Q5E9S9|S38A5_BOVIN | Sodium-coupled neutral amino acid transporter 5 OS=Bos taurus GN=SLC38A5 PE=2 SV=1 | 75 | 512 | 2.0E-09 |
| sp|Q8IZM9|S38A6_HUMAN | Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=1 SV=2 | 106 | 514 | 5.0E-09 |
| sp|Q9JM15|S38A1_RAT | Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1 | 80 | 512 | 2.0E-08 |
| sp|Q8WUX1|S38A5_HUMAN | Sodium-coupled neutral amino acid transporter 5 OS=Homo sapiens GN=SLC38A5 PE=1 SV=1 | 80 | 512 | 5.0E-08 |
| sp|Q8K2P7|S38A1_MOUSE | Sodium-coupled neutral amino acid transporter 1 OS=Mus musculus GN=Slc38a1 PE=1 SV=1 | 80 | 414 | 6.0E-08 |
| sp|Q3U1J0|S38A5_MOUSE | Sodium-coupled neutral amino acid transporter 5 OS=Mus musculus GN=Slc38a5 PE=1 SV=1 | 91 | 512 | 6.0E-08 |
| sp|P34579|UNC47_CAEEL | Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 | 79 | 515 | 1.0E-07 |
| sp|Q9H2H9|S38A1_HUMAN | Sodium-coupled neutral amino acid transporter 1 OS=Homo sapiens GN=SLC38A1 PE=1 SV=1 | 80 | 512 | 3.0E-07 |
| sp|Q3USY0|S38AB_MOUSE | Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2 | 96 | 502 | 6.0E-07 |
| sp|Q9SS86|LHTL4_ARATH | Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 | 85 | 502 | 7.0E-07 |
| sp|A2VCW5|S38A5_RAT | Sodium-coupled neutral amino acid transporter 5 OS=Rattus norvegicus GN=Slc38a5 PE=1 SV=1 | 121 | 512 | 7.0E-07 |
| sp|Q5R443|S38A1_PONAB | Sodium-coupled neutral amino acid transporter 1 OS=Pongo abelii GN=SLC38A1 PE=2 SV=1 | 80 | 512 | 8.0E-07 |
| sp|P47082|AVT1_YEAST | Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 | 8 | 478 | 2.0E-06 |
| sp|Q6DIV6|VIAAT_XENTR | Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 | 130 | 502 | 3.0E-06 |
| sp|Q28HE5|S38A6_XENTR | Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 | 81 | 498 | 6.0E-06 |
| sp|Q6PF45|VIAAT_XENLA | Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 | 130 | 502 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 153 | 175 | 22 |
| 2 | 205 | 227 | 22 |
| 3 | 240 | 259 | 19 |
| 4 | 274 | 293 | 19 |
| 5 | 306 | 328 | 22 |
| 6 | 343 | 365 | 22 |
| 7 | 431 | 450 | 19 |
| 8 | 455 | 477 | 22 |
| 9 | 489 | 511 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7087 MYKIKARASSLRRAATFSHQPSPRLHPDNELSYPEQREPGGFRRQHLHLRARQRRFSGPLVVAKNFVDFLDLYGS FAGEDLEDADTSEDESAIDDRSEDEAADRRPLLGHRRSSRRYTRGGDASTVKTFFTLLKAFIGTGIMFLPKAFRN GGILFSSLTLVAVSLINCLCFRLLLDCRQKYGGGYGELGAAIVGPRFRSIILASIAISQLGFVCAGLIFTAENLL AFLQAVSRDRRGFDLGVPSLIALQLVPLIPLALIRNISKLGPVALLSDVFILAGLAYIWYYDIWTLAADGLAPSV RLFNPSAFTLTVGSAIFTFEGIGLILPIQSSMRKPEHFSGLLYLVMFLITIIFTSVGALCYATFGEATRIQVISN FPQDSALVNAVQLLYSLAVLGGEPVQLFPAVRILETSLFGERATGKKSLAIKWKKNAIRSAIVALCIGISMIGAT DLDKFVSLIGSFACVPLVYIYPAYLHYKGAADRSWAKTLDLALMVLGLVAMVYTTSVTVFQWIET* |
| Coding | >Hirsu2|7087 ATGTACAAGATCAAGGCCCGGGCCAGCTCCCTACGTCGTGCGGCTACCTTCTCTCATCAGCCGTCGCCCCGACTT CATCCGGACAATGAGCTTTCGTATCCAGAACAGCGGGAACCCGGGGGCTTCAGGCGCCAGCATCTACACCTCAGG GCCCGCCAGCGGCGCTTTAGTGGCCCCCTGGTTGTTGCCAAGAATTTCGTCGACTTCCTTGATCTGTACGGTAGC TTTGCTGGTGAGGACCTCGAAGATGCTGACACGTCCGAAGACGAGTCCGCCATAGACGATCGCTCAGAAGACGAA GCCGCCGATCGTCGCCCGCTGCTGGGACACCGCAGAAGCTCTAGGCGCTATACTCGAGGTGGCGACGCGAGCACC GTTAAGACTTTCTTCACTCTACTCAAGGCCTTCATCGGCACCGGCATCATGTTTCTCCCCAAGGCATTTCGGAAC GGTGGGATTCTCTTTTCGTCCCTTACCCTGGTGGCCGTCTCCCTCATCAACTGCCTGTGCTTTCGCCTGCTCCTG GATTGCCGTCAGAAGTATGGTGGAGGATATGGAGAACTGGGCGCAGCCATTGTCGGACCGCGGTTTCGCAGCATT ATCCTCGCATCCATAGCCATCTCCCAGCTGGGATTTGTCTGCGCCGGCCTCATATTTACTGCCGAAAACCTCTTG GCCTTTCTCCAGGCCGTGTCGCGAGACCGCCGTGGCTTCGACTTGGGGGTTCCCAGCCTCATCGCTCTTCAACTC GTACCCCTCATTCCTCTGGCTCTCATCCGAAACATATCTAAGCTGGGCCCGGTTGCTCTGCTCTCGGATGTCTTC ATCCTCGCCGGTTTGGCCTACATTTGGTACTACGACATATGGACGCTGGCGGCCGATGGCCTCGCGCCGAGCGTG CGCTTGTTCAACCCGTCAGCTTTTACGTTGACCGTCGGATCGGCAATCTTTACGTTTGAGGGCATTGGCCTCATT CTACCCATCCAGTCTAGCATGAGAAAACCGGAGCATTTCAGTGGGCTCCTCTACCTTGTCATGTTCCTCATTACC ATTATCTTCACCTCTGTCGGTGCGCTTTGTTACGCCACGTTTGGGGAAGCGACCCGGATCCAGGTGATATCCAAT TTCCCGCAAGACTCGGCACTTGTCAACGCGGTGCAGCTGCTATACTCCCTGGCCGTTCTTGGAGGCGAGCCTGTG CAGCTGTTTCCCGCAGTGCGCATACTCGAAACATCGTTATTCGGAGAGCGAGCGACAGGCAAGAAGAGTTTGGCA ATCAAATGGAAAAAGAATGCGATACGGTCGGCGATCGTGGCGCTGTGTATCGGCATCAGCATGATTGGGGCGACT GACCTGGACAAGTTTGTGTCCTTGATTGGAAGCTTTGCGTGCGTTCCGCTCGTGTACATATATCCGGCCTATCTG CACTACAAGGGAGCCGCCGACAGGAGCTGGGCCAAGACGCTGGACCTCGCACTGATGGTGCTCGGCCTCGTTGCC ATGGTCTACACTACCAGCGTGACAGTGTTCCAGTGGATCGAGACATAG |
| Transcript | >Hirsu2|7087 ATGTACAAGATCAAGGCCCGGGCCAGCTCCCTACGTCGTGCGGCTACCTTCTCTCATCAGCCGTCGCCCCGACTT CATCCGGACAATGAGCTTTCGTATCCAGAACAGCGGGAACCCGGGGGCTTCAGGCGCCAGCATCTACACCTCAGG GCCCGCCAGCGGCGCTTTAGTGGCCCCCTGGTTGTTGCCAAGAATTTCGTCGACTTCCTTGATCTGTACGGTAGC TTTGCTGGTGAGGACCTCGAAGATGCTGACACGTCCGAAGACGAGTCCGCCATAGACGATCGCTCAGAAGACGAA GCCGCCGATCGTCGCCCGCTGCTGGGACACCGCAGAAGCTCTAGGCGCTATACTCGAGGTGGCGACGCGAGCACC GTTAAGACTTTCTTCACTCTACTCAAGGCCTTCATCGGCACCGGCATCATGTTTCTCCCCAAGGCATTTCGGAAC GGTGGGATTCTCTTTTCGTCCCTTACCCTGGTGGCCGTCTCCCTCATCAACTGCCTGTGCTTTCGCCTGCTCCTG GATTGCCGTCAGAAGTATGGTGGAGGATATGGAGAACTGGGCGCAGCCATTGTCGGACCGCGGTTTCGCAGCATT ATCCTCGCATCCATAGCCATCTCCCAGCTGGGATTTGTCTGCGCCGGCCTCATATTTACTGCCGAAAACCTCTTG GCCTTTCTCCAGGCCGTGTCGCGAGACCGCCGTGGCTTCGACTTGGGGGTTCCCAGCCTCATCGCTCTTCAACTC GTACCCCTCATTCCTCTGGCTCTCATCCGAAACATATCTAAGCTGGGCCCGGTTGCTCTGCTCTCGGATGTCTTC ATCCTCGCCGGTTTGGCCTACATTTGGTACTACGACATATGGACGCTGGCGGCCGATGGCCTCGCGCCGAGCGTG CGCTTGTTCAACCCGTCAGCTTTTACGTTGACCGTCGGATCGGCAATCTTTACGTTTGAGGGCATTGGCCTCATT CTACCCATCCAGTCTAGCATGAGAAAACCGGAGCATTTCAGTGGGCTCCTCTACCTTGTCATGTTCCTCATTACC ATTATCTTCACCTCTGTCGGTGCGCTTTGTTACGCCACGTTTGGGGAAGCGACCCGGATCCAGGTGATATCCAAT TTCCCGCAAGACTCGGCACTTGTCAACGCGGTGCAGCTGCTATACTCCCTGGCCGTTCTTGGAGGCGAGCCTGTG CAGCTGTTTCCCGCAGTGCGCATACTCGAAACATCGTTATTCGGAGAGCGAGCGACAGGCAAGAAGAGTTTGGCA ATCAAATGGAAAAAGAATGCGATACGGTCGGCGATCGTGGCGCTGTGTATCGGCATCAGCATGATTGGGGCGACT GACCTGGACAAGTTTGTGTCCTTGATTGGAAGCTTTGCGTGCGTTCCGCTCGTGTACATATATCCGGCCTATCTG CACTACAAGGGAGCCGCCGACAGGAGCTGGGCCAAGACGCTGGACCTCGCACTGATGGTGCTCGGCCTCGTTGCC ATGGTCTACACTACCAGCGTGACAGTGTTCCAGTGGATCGAGACATAG |
| Gene | >Hirsu2|7087 ATGTACAAGATCAAGGCCCGGGCCAGCTCCCTACGTCGTGCGGCTACCTTCTCTCATCAGCCGTCGCCCCGACTT CATCCGGACAATGAGCTTTCGTATCCAGAACAGCGGGAACCCGGGGGCTTCAGGCGCCAGCATCTACACCTCAGG GCCCGCCAGCGGCGCTTTAGTGGCCCCCTGGTTGTTGCCAAGAATTTCGTCGACTTCCTTGATCTGTACGGTAGC TTTGCTGGTGAGGACCTCGAAGATGCTGACACGTCCGAAGACGAGTCCGCCATAGACGATCGCTCAGAAGACGAA GCCGCCGATCGTCGCCCGCTGCTGGGACACCGCAGAAGCTCTAGGCGCTATACTCGAGGTGGCGACGCGAGCACC GTTAAGACTTTCTTCACTCTACTCAAGGCCTTCATCGGCACCGGCATCATGTTTCTCCCCAAGGCATTTCGGAAC GGTGGGATTCTCTTTTCGTCCCTTACCCTGGTGGCCGTCTCCCTCATCAACTGCCTGTGCTTTCGCCTGCTCCTG GATTGCCGTCAGAAGTATGGTGGAGGATATGGAGAACTGGGCGCAGCCATTGTCGGACCGCGGTTTCGCAGCATT ATCCTCGCATCCATAGCCATCTCCCAGCTGGGATTTGTCTGCGCCGGCCTCATATTTACTGCCGAAAACCTCTTG GCCTTTCTCCAGGCCGTGTCGCGAGACCGCCGTGGCTTCGACTTGGGGGTTCCCAGCCTCATCGCTCTTCAACTC GTACCCCTCATTCCTCTGGCTCTCATCCGAAACATATCTAAGCTGGGCCCGGTTGCTCTGCTCTCGGATGTCTTC ATCCTCGCCGGTTTGGCCTACATTTGGTACTACGACATATGGACGCTGGCGGCCGATGGCCTCGCGCCGAGCGTG CGCTTGTTCAACCCGTCAGCTTTTACGTTGACCGTCGGATCGGCAATCTTTACGTTTGAGGGCATTGGCCTCATT CTACCCATCCAGTCTAGCATGAGAAAACCGGAGCATTTCAGTGGGCTCCTCTACCTTGTCATGTTCCTCATTACC ATTATCTTCACCTCTGTCGGTGCGCTTTGTTACGCCACGTTTGGGGAAGCGACCCGGATCCAGGTGATATCCAAT TTCCCGCAAGACTCGGCACTTGTCAACGCGGTGCAGCTGCTATACTCCCTGGCCGTTCTTGGAGGCGAGCCTGTG CAGCTGTTTCCCGCAGTGCGCATACTCGAAACATCGTTATTCGGAGAGCGAGCGACAGGCAAGAAGAGTTTGGCA ATCAAATGGAAAAAGAATGCGATACGGTCGGCGATCGTGGCGCTGTGTATCGGCATCAGCATGATTGGGGCGACT GACCTGGACAAGTTTGTGTCCTTGATTGGAAGCTTTGCGTGCGTTCCGCTCGTGTACATATATCCGGCCTATCTG CACTACAAGGGAGCCGCCGACAGGAGCTGGGCCAAGACGCTGGACCTCGCACTGATGGTGCTCGGCCTCGTTGCC ATGGTCTACACTACCAGCGTGACAGTGTTCCAGTGGATCGAGACATAG |