Protein ID | Hirsu2|7086 |
Gene name | |
Location | Contig_395:19351..20877 |
Strand | + |
Gene length (bp) | 1526 |
Transcript length (bp) | 1437 |
Coding sequence length (bp) | 1437 |
Protein length (aa) | 479 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1419 | 0.0711 | 0.4152 | 0.5298 | 0.0999 | 0.008 | 0.4115 | 0.5673 | 0.4783 | 0.0146 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 17 | 0.999626 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 434 | 456 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3665 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|7086 MLPELLVLALLSVSAGAAEERRLGAYVFHRHGDRTSKAWKPVNLTALGALQVHSSGAFYRDRYLTGPSPLGLSRD VAVPAQLAVSSPRDAVLHASALTFLQGLYPPQPALGAETLANGSRVEAPLGGYQYVPVEPVAAAAAAAAERPEDN AWLQGGTGCVNAEVSSNSYFASADYKRAYDGSLDFYQSLLPVVNGTYGPAAANFKNAYSIFDLVNVATIHNASIP SSSLLSGATRARLLELASEHEWNLAYNASEPVRAIAGAVLAGQVLEALQAVVEGKPSVPRLHAQFGAYGTFMAFF GLAQLPAASADFRGICDYASSMAFELVTTAPAGARPAADDVSVRFLFANGSAADAGLRPFPLFGQGSSVLKWRDF AAGMSALAVSDTPHWCALCGKTDGKCAAKGPDGDDTARAAAAGDGGGVSRPVAGVIGALVTLLVVLGIQAAAMLF GGLRLVSNSSLARARRADLAAEAGAAKS* |
Coding | >Hirsu2|7086 ATGCTACCCGAGCTGCTCGTGCTCGCGCTTCTCTCCGTCTCGGCCGGCGCCGCCGAGGAGCGCCGCCTCGGCGCC TACGTCTTCCACCGGCACGGCGACCGCACCTCCAAGGCCTGGAAGCCCGTCAACCTGACGGCCCTCGGCGCGCTG CAGGTCCACTCGTCCGGCGCCTTCTACCGCGACCGCTACCTCACCGGCCCGTCGCCCCTCGGCCTCAGCCGGGAC GTCGCCGTGCCGGCCCAGCTGGCCGTCTCCTCGCCCCGCGACGCCGTCCTGCACGCCTCCGCCCTCACCTTCCTG CAGGGCCTGTACCCGCCCCAGCCGGCCCTCGGCGCCGAGACGCTCGCCAACGGGTCCCGCGTCGAGGCGCCGCTC GGCGGCTACCAGTACGTCCCCGTCGAGCCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGAGAGGCCCGAGGACAAC GCCTGGCTGCAGGGCGGCACCGGCTGCGTCAACGCCGAGGTCAGCTCCAACAGCTACTTTGCCTCGGCCGACTAC AAGCGTGCCTACGACGGCTCCCTCGACTTCTACCAGAGCCTGCTGCCCGTGGTCAACGGCACGTATGGCCCGGCT GCTGCCAACTTCAAGAATGCCTACTCCATCTTCGACCTCGTCAACGTCGCCACCATCCACAACGCCTCCATACCC TCGTCCTCGCTCCTGAGCGGCGCGACGCGCGCGCGCCTCCTCGAGCTCGCCTCCGAGCACGAGTGGAACCTGGCC TACAACGCCAGCGAGCCCGTCCGGGCCATCGCCGGCGCCGTCCTGGCCGGGCAGGTCCTCGAGGCGCTGCAGGCC GTGGTGGAGGGCAAGCCGTCGGTGCCGAGGCTGCACGCGCAGTTCGGCGCCTACGGCACCTTCATGGCCTTCTTC GGCCTCGCCCAGCTGCCGGCCGCGAGCGCCGACTTCCGCGGCATCTGCGACTACGCCTCGTCCATGGCGTTCGAG CTCGTGACGACGGCGCCCGCCGGCGCCAGGCCGGCCGCCGACGACGTCTCCGTGCGCTTCCTCTTCGCCAACGGC TCGGCTGCCGACGCCGGCCTCCGGCCCTTCCCCCTCTTCGGCCAGGGCAGCAGCGTGCTCAAGTGGCGCGACTTC GCGGCCGGCATGTCGGCCTTGGCCGTCTCCGACACGCCGCACTGGTGCGCCCTGTGCGGCAAGACGGACGGCAAG TGCGCCGCCAAGGGCCCCGACGGGGACGACACCGCCCGGGCGGCGGCGGCCGGCGACGGCGGCGGCGTCTCCAGG CCCGTCGCCGGCGTCATCGGCGCGCTCGTCACCCTCCTCGTCGTTCTCGGCATCCAGGCCGCCGCCATGCTCTTC GGCGGCCTGCGCCTCGTCAGCAACTCGTCGCTTGCGCGCGCGCGCCGGGCCGACCTCGCCGCCGAGGCCGGCGCG GCCAAGTCGTGA |
Transcript | >Hirsu2|7086 ATGCTACCCGAGCTGCTCGTGCTCGCGCTTCTCTCCGTCTCGGCCGGCGCCGCCGAGGAGCGCCGCCTCGGCGCC TACGTCTTCCACCGGCACGGCGACCGCACCTCCAAGGCCTGGAAGCCCGTCAACCTGACGGCCCTCGGCGCGCTG CAGGTCCACTCGTCCGGCGCCTTCTACCGCGACCGCTACCTCACCGGCCCGTCGCCCCTCGGCCTCAGCCGGGAC GTCGCCGTGCCGGCCCAGCTGGCCGTCTCCTCGCCCCGCGACGCCGTCCTGCACGCCTCCGCCCTCACCTTCCTG CAGGGCCTGTACCCGCCCCAGCCGGCCCTCGGCGCCGAGACGCTCGCCAACGGGTCCCGCGTCGAGGCGCCGCTC GGCGGCTACCAGTACGTCCCCGTCGAGCCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGAGAGGCCCGAGGACAAC GCCTGGCTGCAGGGCGGCACCGGCTGCGTCAACGCCGAGGTCAGCTCCAACAGCTACTTTGCCTCGGCCGACTAC AAGCGTGCCTACGACGGCTCCCTCGACTTCTACCAGAGCCTGCTGCCCGTGGTCAACGGCACGTATGGCCCGGCT GCTGCCAACTTCAAGAATGCCTACTCCATCTTCGACCTCGTCAACGTCGCCACCATCCACAACGCCTCCATACCC TCGTCCTCGCTCCTGAGCGGCGCGACGCGCGCGCGCCTCCTCGAGCTCGCCTCCGAGCACGAGTGGAACCTGGCC TACAACGCCAGCGAGCCCGTCCGGGCCATCGCCGGCGCCGTCCTGGCCGGGCAGGTCCTCGAGGCGCTGCAGGCC GTGGTGGAGGGCAAGCCGTCGGTGCCGAGGCTGCACGCGCAGTTCGGCGCCTACGGCACCTTCATGGCCTTCTTC GGCCTCGCCCAGCTGCCGGCCGCGAGCGCCGACTTCCGCGGCATCTGCGACTACGCCTCGTCCATGGCGTTCGAG CTCGTGACGACGGCGCCCGCCGGCGCCAGGCCGGCCGCCGACGACGTCTCCGTGCGCTTCCTCTTCGCCAACGGC TCGGCTGCCGACGCCGGCCTCCGGCCCTTCCCCCTCTTCGGCCAGGGCAGCAGCGTGCTCAAGTGGCGCGACTTC GCGGCCGGCATGTCGGCCTTGGCCGTCTCCGACACGCCGCACTGGTGCGCCCTGTGCGGCAAGACGGACGGCAAG TGCGCCGCCAAGGGCCCCGACGGGGACGACACCGCCCGGGCGGCGGCGGCCGGCGACGGCGGCGGCGTCTCCAGG CCCGTCGCCGGCGTCATCGGCGCGCTCGTCACCCTCCTCGTCGTTCTCGGCATCCAGGCCGCCGCCATGCTCTTC GGCGGCCTGCGCCTCGTCAGCAACTCGTCGCTTGCGCGCGCGCGCCGGGCCGACCTCGCCGCCGAGGCCGGCGCG GCCAAGTCGTGA |
Gene | >Hirsu2|7086 ATGCTACCCGAGCTGCTCGTGCTCGCGCTTCTCTCCGTCTCGGCCGGCGCCGCCGAGGAGCGCCGCCTCGGCGCC TACGTCTTCCACCGGCACGGCGACCGCACCTCCAAGGCCTGGAAGCCCGTCAACCTGACGGCCCTCGGCGCGCTG CAGGTCCACTCGTCCGGCGCCTTCTACCGCGACCGCTACCTCACCGGCCCGTCGCCCCTCGGCCTCAGCCGGGAC GTCGCCGTGCCGGCCCAGCTGGCCGTCTCCTCGCCCCGCGACGCCGTCCTGCACGCCTCCGCCCTCACCTTCCTG CAGGGCCTGTACCCGCCCCAGCCGGCCCTCGGCGCCGAGACGCTCGCCAACGGGTCCCGCGTCGAGGCGCCGCTC GGCGGCTACCAGTACGTCCCCGTCGAGCCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGAGAGGCCCGAGGACAAC GCCTGGCTGCAGGGCGGCACCGGCTGCGTCAACGCCGAGGTCAGCTCCAACAGCTACTTTGCCTCGGCCGACTAC AAGCGTGCCTACGACGGCTCCCTCGACTTCTACCAGAGCCTGCTGCCCGTGGTCAACGGCACGTATGGCCCGGCT GCTGCCAACTTCAAGAATGCCTACTCCAGTACGTCTCGACGGCCCTTGGGCCGCAAAACCCCTTCCCTCCCCTAT CCCTCGCCACAGACTGACCCTTTCCTGCGCCTCGGCGTCCAGTCTTCGACCTCGTCAACGTCGCCACCATCCACA ACGCCTCCATACCCTCGTCCTCGCTCCTGAGCGGCGCGACGCGCGCGCGCCTCCTCGAGCTCGCCTCCGAGCACG AGTGGAACCTGGCCTACAACGCCAGCGAGCCCGTCCGGGCCATCGCCGGCGCCGTCCTGGCCGGGCAGGTCCTCG AGGCGCTGCAGGCCGTGGTGGAGGGCAAGCCGTCGGTGCCGAGGCTGCACGCGCAGTTCGGCGCCTACGGCACCT TCATGGCCTTCTTCGGCCTCGCCCAGCTGCCGGCCGCGAGCGCCGACTTCCGCGGCATCTGCGACTACGCCTCGT CCATGGCGTTCGAGCTCGTGACGACGGCGCCCGCCGGCGCCAGGCCGGCCGCCGACGACGTCTCCGTGCGCTTCC TCTTCGCCAACGGCTCGGCTGCCGACGCCGGCCTCCGGCCCTTCCCCCTCTTCGGCCAGGGCAGCAGCGTGCTCA AGTGGCGCGACTTCGCGGCCGGCATGTCGGCCTTGGCCGTCTCCGACACGCCGCACTGGTGCGCCCTGTGCGGCA AGACGGACGGCAAGTGCGCCGCCAAGGGCCCCGACGGGGACGACACCGCCCGGGCGGCGGCGGCCGGCGACGGCG GCGGCGTCTCCAGGCCCGTCGCCGGCGTCATCGGCGCGCTCGTCACCCTCCTCGTCGTTCTCGGCATCCAGGCCG CCGCCATGCTCTTCGGCGGCCTGCGCCTCGTCAGCAACTCGTCGCTTGCGCGCGCGCGCCGGGCCGACCTCGCCG CCGAGGCCGGCGCGGCCAAGTCGTGA |