© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7067 |
| Gene name | |
| Location | Contig_393:13291..13787 |
| Strand | + |
| Gene length (bp) | 496 |
| Transcript length (bp) | 351 |
| Coding sequence length (bp) | 351 |
| Protein length (aa) | 117 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02970 | TBCA | Tubulin binding cofactor A | 8.6E-24 | 7 | 96 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0048487 | beta-tubulin binding | Yes |
| GO:0007023 | post-chaperonin tubulin folding pathway | Yes |
| GO:0007021 | tubulin complex assembly | Yes |
| GO:0022607 | cellular component assembly | No |
| GO:0005488 | binding | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043933 | protein-containing complex subunit organization | No |
| GO:0016043 | cellular component organization | No |
| GO:0034622 | cellular protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0005515 | protein binding | No |
| GO:0006457 | protein folding | No |
| GO:0015631 | tubulin binding | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7067 MPPPSPLAICTGSVQRLLKEEASYHAELAEQEAQVKLLEAEVASGGQASDDGNADFMLKQQRTAVEQTKAVFGPL KKRLDEAVAALEDQVAASEETGTHAADLEQAKSTLQKAKAA* |
| Coding | >Hirsu2|7067 ATGCCTCCTCCGTCGCCGCTCGCCATCTGCACCGGCTCCGTCCAGCGCCTGCTCAAGGAAGAGGCGTCGTACCAC GCCGAGCTGGCGGAGCAAGAGGCGCAGGTCAAGCTCCTCGAGGCCGAGGTCGCGAGCGGCGGCCAGGCCAGCGAC GACGGCAACGCCGACTTCATGCTGAAGCAGCAGCGAACCGCTGTGGAGCAGACCAAGGCCGTCTTCGGCCCGCTG AAGAAGCGGCTGGACGAGGCGGTGGCCGCGCTCGAGGACCAGGTCGCCGCGAGCGAGGAGACGGGAACGCACGCG GCCGACCTCGAACAAGCAAAGTCGACGCTGCAAAAGGCGAAGGCGGCATGA |
| Transcript | >Hirsu2|7067 ATGCCTCCTCCGTCGCCGCTCGCCATCTGCACCGGCTCCGTCCAGCGCCTGCTCAAGGAAGAGGCGTCGTACCAC GCCGAGCTGGCGGAGCAAGAGGCGCAGGTCAAGCTCCTCGAGGCCGAGGTCGCGAGCGGCGGCCAGGCCAGCGAC GACGGCAACGCCGACTTCATGCTGAAGCAGCAGCGAACCGCTGTGGAGCAGACCAAGGCCGTCTTCGGCCCGCTG AAGAAGCGGCTGGACGAGGCGGTGGCCGCGCTCGAGGACCAGGTCGCCGCGAGCGAGGAGACGGGAACGCACGCG GCCGACCTCGAACAAGCAAAGTCGACGCTGCAAAAGGCGAAGGCGGCATGA |
| Gene | >Hirsu2|7067 ATGCCTCCTCCGTCGCCGCTCGCCATCTGCACCGGCTCCGTCCAGCGCCTGCTCAAGGAAGAGGCGTCGTACCAC GCCGAGCTGGCGGAGCAAGAGGCGCAGGTCAAGCTCCTCGAGGCCGAGGTCGCGAGCGGCGGCCAGGCCAGCGAC GACGGCAACGCCGACTTCATGCTGAAGCAGCAGGTACAAACGCCACCCCGACTCGCCGCGTCCATGATTTCTTTT TCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTTTTTCTTCTTGCTTGCTTCTTGCCGCTTCTTTCGCTCGG ATCGTTGCTGACCGTCGTCGGCTTGTAGCGAACCGCTGTGGAGCAGACCAAGGCCGTCTTCGGCCCGCTGAAGAA GCGGCTGGACGAGGCGGTGGCCGCGCTCGAGGACCAGGTCGCCGCGAGCGAGGAGACGGGAACGCACGCGGCCGA CCTCGAACAAGCAAAGTCGACGCTGCAAAAGGCGAAGGCGGCATGA |