© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|7037 |
| Gene name | |
| Location | Contig_39:34993..35722 |
| Strand | + |
| Gene length (bp) | 729 |
| Transcript length (bp) | 417 |
| Coding sequence length (bp) | 417 |
| Protein length (aa) | 139 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04178 | Got1 | Got1/Sft2-like family | 1.4E-15 | 16 | 114 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03554|GOT1_YEAST | Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1 | 3 | 128 | 2.0E-31 |
| sp|Q20263|GOT1_CAEEL | Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2 | 1 | 138 | 2.0E-21 |
| sp|Q54CL4|GOT1_DICDI | Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1 | 6 | 137 | 4.0E-21 |
| sp|Q9DCQ3|GOT1A_MOUSE | Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1 | 5 | 127 | 6.0E-21 |
| sp|Q6ZVE7|GOT1A_HUMAN | Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1 | 5 | 127 | 7.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03554|GOT1_YEAST | Protein transport protein GOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOT1 PE=1 SV=1 | 3 | 128 | 2.0E-31 |
| sp|Q20263|GOT1_CAEEL | Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2 | 1 | 138 | 2.0E-21 |
| sp|Q54CL4|GOT1_DICDI | Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1 | 6 | 137 | 4.0E-21 |
| sp|Q9DCQ3|GOT1A_MOUSE | Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1 | 5 | 127 | 6.0E-21 |
| sp|Q6ZVE7|GOT1A_HUMAN | Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1 | 5 | 127 | 7.0E-21 |
| sp|Q2NKV8|GOT1A_BOVIN | Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1 | 5 | 127 | 3.0E-20 |
| sp|Q9USJ2|GOT1_SCHPO | Protein transport protein got1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=got1 PE=3 SV=1 | 3 | 134 | 8.0E-20 |
| sp|Q9Y3E0|GOT1B_HUMAN | Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1 | 5 | 128 | 1.0E-17 |
| sp|Q2YDE3|GOT1B_BOVIN | Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1 | 5 | 128 | 1.0E-17 |
| sp|Q9CR60|GOT1B_MOUSE | Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1 | 5 | 128 | 2.0E-17 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 36 | 58 | 22 |
| 3 | 70 | 92 | 22 |
| 4 | 102 | 124 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|7037 MSMWLSDSQKIGVVFCSGGGLFLIGGVMLFFDRAMLAMGNILFLIGLTIIIGPQKTLLFFARKQKAKGTAAFFVG LVLILLRWTFVGFVVEAYGIAVLFGDFLGTIAGFARGIPVIGPYIGLLVDRLGLGRRNAELPV* |
| Coding | >Hirsu2|7037 ATGTCGATGTGGCTCTCCGACTCGCAAAAGATCGGCGTCGTCTTCTGTTCCGGCGGGGGCCTGTTCCTCATCGGC GGAGTGATGCTGTTCTTTGATCGCGCTATGCTCGCGATGGGAAACATCCTCTTCCTCATCGGCCTGACCATCATC ATCGGCCCGCAAAAGACGCTGCTGTTCTTCGCGCGCAAGCAAAAGGCCAAGGGCACGGCCGCCTTCTTCGTCGGC CTGGTCCTCATCCTCCTGCGCTGGACCTTTGTCGGCTTCGTCGTCGAGGCCTACGGCATCGCCGTCCTGTTCGGG GACTTCCTCGGCACCATCGCAGGCTTCGCCCGCGGTATACCGGTCATCGGTCCCTACATCGGCCTCTTGGTCGAC AGGCTCGGGCTCGGACGCAGAAACGCCGAGCTGCCCGTATGA |
| Transcript | >Hirsu2|7037 ATGTCGATGTGGCTCTCCGACTCGCAAAAGATCGGCGTCGTCTTCTGTTCCGGCGGGGGCCTGTTCCTCATCGGC GGAGTGATGCTGTTCTTTGATCGCGCTATGCTCGCGATGGGAAACATCCTCTTCCTCATCGGCCTGACCATCATC ATCGGCCCGCAAAAGACGCTGCTGTTCTTCGCGCGCAAGCAAAAGGCCAAGGGCACGGCCGCCTTCTTCGTCGGC CTGGTCCTCATCCTCCTGCGCTGGACCTTTGTCGGCTTCGTCGTCGAGGCCTACGGCATCGCCGTCCTGTTCGGG GACTTCCTCGGCACCATCGCAGGCTTCGCCCGCGGTATACCGGTCATCGGTCCCTACATCGGCCTCTTGGTCGAC AGGCTCGGGCTCGGACGCAGAAACGCCGAGCTGCCCGTATGA |
| Gene | >Hirsu2|7037 ATGTCGATGTGGCTCTCCGACTCGCAAAGTACGGTCCTGCGAACCGGGGGGAGTTGCCGCGACTTTTCGCTGACG CCTTGTTGGTAGAGATCGGCGTCGTCTTCTGTTCCGGCGGTGGGTAGGCGCCCTGCCGCGAGCCGTTGCGCGTCG CTACGAGCCTCGCTGACCCGTGCTCTCTCCCTCTCCGCAGGGGGCCTGTTCCTCATCGGCGGAGTGATGCTGTTC TTTGATCGCGCTATGTAGCTCTCTCTCGTCCCCCTCCCCCTTTTTCAGAGGACGCGCGCAGCTGACCTAGGCAAC CTCCCGCAGGCTCGCGATGGGAAACGTACGGACGCAAGAGCCCGCCCCCCTGATCCCCTTCGAAAAATCACCGCC GGCCGCGAGGCGCGCGCACCGCTGACGAGTAGCGCCGTCGCCCTCCCCCCCTCGCAGATCCTCTTCCTCATCGGC CTGACCATCATCATCGGCCCGCAAAAGACGCTGCTGTTCTTCGCGCGCAAGCAAAAGGCCAAGGGCACGGCCGCC TTCTTCGTCGGCCTGGTCCTCATCCTCCTGCGCTGGACCTTTGTCGGCTTCGTCGTCGAGGCCTACGGCATCGCC GTCCTGTTCGGGGACTTCCTCGGCACCATCGCAGGCTTCGCCCGCGGTATACCGGTCATCGGTCCCTACATCGGC CTCTTGGTCGACAGGCTCGGGCTCGGACGCAGAAACGCCGAGCTGCCCGTATGA |