Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|7000
Gene name
LocationContig_385:15861..18353
Strand+
Gene length (bp)2492
Transcript length (bp)2286
Coding sequence length (bp)2286
Protein length (aa) 762

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05183 RdRP RNA dependent RNA polymerase 1.9E-111 23 544

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1 35 390 1.0E-24
sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 30 403 3.0E-24
sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1 68 398 1.0E-19
sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1 35 390 1.0E-18
sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2 35 493 5.0E-17
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1 35 390 1.0E-24
sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 30 403 3.0E-24
sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1 68 398 1.0E-19
sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1 35 390 1.0E-18
sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2 35 493 5.0E-17
sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1 68 398 3.0E-14
sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rdr1 PE=1 SV=1 73 399 7.0E-11
sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2 242 394 1.0E-06
[Show less]

GO

GO Term Description Terminal node
GO:0003968 RNA-directed 5'-3' RNA polymerase activity Yes
GO:0140098 catalytic activity, acting on RNA No
GO:0034062 5'-3' RNA polymerase activity No
GO:0097747 RNA polymerase activity No
GO:0016740 transferase activity No
GO:0003674 molecular_function No
GO:0016779 nucleotidyltransferase activity No
GO:0003824 catalytic activity No
GO:0016772 transferase activity, transferring phosphorus-containing groups No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|7000
MESVLRPERQKDESGGEEVEQPWALNIQQNHEEPVLKLFARLALSLSRTWATVQLEPDQMYHRERDTGTHKVMND
GVGQMSRRLASEIASCLGLTETPAGYQGRIGCAKGMWIVDVEDDGLDDDIWIETYPSQRKWACDWQDLEHRCFEV
KTWSRQAKPAALNQQFIPLLEAQAISPGQMRETIAEHMRRNLAEELGGQSAALGNPEDLRLWVDRVGQSRTLMPL
HRSIPLLGGLPATDEDLVGLLLDAGFDHLKLKILQGVLYDIGKKKADTLKAKTNVRIPQSTYLLMVADFTGTLEE
GEVQVSFSTKYKVDGFCDTLLEEMDVLVARSPAHLPSDIQRVRAMSYPRLRKLKDVVIFSTKGRTPLADLLSGGD
YDGDLAWVCWDRDIVNNFRNAPLLTAPDQISRNLFDRGYVKKLATKVGEILKEQRTVQAMCDKFVFSGFYFNMQQ
SHLGMITKYKEKLCYHRDSAGSDSAIQLSALLGLLVDQGKQGIIFSGKHWDKFRREVINGPPGLDDPEYFGERPT
NTPTKHGRRHILDYLKFQVAEQAVNDNLTMFQSAISSRGGQEYDADLTKMYNDYELRAENSETCRQLLKCLRADI
DAVKVMWQKVITKSDKEGESDYTTKVNEVYRKWMDIDPPEELQSSDLVQMLKEGWSRDPHSSPWALLKASATFRY
HHKVQSFTWRMAGMQLCYLKSKMAAKTLPAAIVQLGMWACLRADKKSIMARSAQRRESMREGESFAALDLDERME
DDGYGYEIDDT*
Coding >Hirsu2|7000
ATGGAAAGCGTTCTTCGTCCGGAGCGTCAAAAAGACGAGTCAGGCGGCGAAGAAGTTGAACAACCATGGGCATTG
AACATTCAACAAAACCACGAAGAGCCAGTCCTCAAGTTGTTCGCCCGACTTGCGCTGAGTTTGTCCCGAACGTGG
GCGACTGTGCAGCTGGAACCAGATCAAATGTATCACCGAGAAAGGGATACCGGCACCCACAAAGTCATGAACGAT
GGTGTCGGCCAAATGTCCCGGCGCCTGGCCAGCGAGATTGCTTCGTGCTTGGGGCTGACGGAGACACCAGCAGGT
TATCAAGGCCGAATTGGCTGTGCCAAGGGAATGTGGATCGTCGATGTCGAAGATGACGGCCTCGACGACGACATC
TGGATCGAAACGTATCCCTCTCAGAGGAAGTGGGCTTGTGACTGGCAGGATCTCGAGCATCGGTGCTTCGAAGTC
AAGACTTGGTCACGACAGGCAAAGCCAGCAGCACTGAACCAGCAGTTTATACCGCTGCTCGAGGCCCAGGCCATA
AGCCCCGGGCAAATGCGCGAGACAATCGCAGAACATATGAGAAGAAATCTCGCCGAGGAACTCGGCGGCCAGTCG
GCAGCATTGGGCAATCCAGAAGATCTGCGCCTGTGGGTGGATCGAGTCGGGCAGTCGAGAACTCTCATGCCGTTG
CACCGCAGCATCCCCCTTTTGGGCGGGCTTCCCGCAACCGACGAGGATCTTGTTGGCCTCCTGTTGGACGCGGGT
TTCGACCACCTGAAGCTCAAAATACTTCAGGGCGTCTTGTACGACATTGGCAAGAAGAAGGCCGATACTCTGAAA
GCAAAGACAAACGTGAGGATACCGCAGTCGACTTATCTCTTAATGGTGGCCGACTTCACCGGTACATTGGAAGAG
GGAGAAGTGCAGGTTTCGTTCTCGACCAAGTATAAAGTGGACGGATTCTGCGACACTCTTCTCGAAGAAATGGAT
GTCCTCGTGGCAAGATCGCCGGCCCATCTACCGAGCGACATCCAAAGAGTCAGGGCCATGTCATACCCTAGACTA
CGGAAGCTTAAGGATGTCGTCATCTTCTCGACGAAGGGCCGGACGCCACTGGCCGATCTGCTGTCGGGCGGTGAT
TATGATGGAGACCTGGCTTGGGTGTGCTGGGATCGCGATATCGTGAATAACTTTCGGAACGCTCCGCTGTTGACC
GCGCCCGATCAGATATCTCGCAACCTCTTCGATCGTGGCTACGTGAAGAAGCTGGCAACGAAGGTGGGCGAGATT
CTAAAAGAGCAGAGGACTGTCCAAGCGATGTGCGATAAGTTCGTGTTTTCCGGGTTCTACTTCAACATGCAGCAG
TCTCATCTCGGAATGATCACCAAATACAAGGAGAAGCTTTGCTACCACCGGGACTCGGCTGGCAGCGACTCGGCC
ATCCAACTGAGTGCCCTGCTTGGTCTCCTTGTGGATCAGGGCAAGCAGGGCATTATTTTCTCTGGCAAACACTGG
GACAAGTTTCGTCGGGAAGTCATCAATGGACCACCCGGCCTGGATGACCCGGAATATTTCGGAGAAAGGCCAACG
AACACGCCAACGAAGCATGGCAGACGGCATATCCTGGACTATCTGAAGTTCCAAGTGGCCGAACAGGCCGTCAAC
GACAACCTGACCATGTTCCAGAGCGCAATATCCTCACGTGGGGGGCAAGAGTACGACGCAGACTTGACGAAAATG
TATAATGACTATGAGCTGAGGGCAGAGAATTCTGAGACTTGTCGCCAGCTTCTGAAGTGTCTGCGCGCAGACATT
GACGCAGTGAAGGTGATGTGGCAAAAAGTGATAACGAAAAGCGACAAGGAAGGCGAGAGCGACTACACGACCAAG
GTGAACGAGGTTTATCGCAAGTGGATGGATATTGACCCTCCTGAAGAGCTGCAGTCGTCCGACCTTGTGCAAATG
CTCAAGGAAGGCTGGAGCAGAGACCCTCACTCGTCCCCGTGGGCCTTACTCAAAGCCTCGGCGACTTTCAGGTAT
CACCACAAGGTGCAATCTTTCACATGGCGAATGGCGGGCATGCAGCTATGCTACTTAAAGTCTAAAATGGCAGCA
AAGACGCTACCAGCGGCCATTGTGCAGCTGGGCATGTGGGCATGTCTCCGGGCGGACAAGAAGAGCATAATGGCC
CGCAGCGCGCAGCGACGAGAGTCTATGAGGGAGGGCGAAAGCTTCGCAGCACTTGACCTCGACGAGCGAATGGAG
GACGATGGGTATGGCTATGAGATTGATGATACCTGA
Transcript >Hirsu2|7000
ATGGAAAGCGTTCTTCGTCCGGAGCGTCAAAAAGACGAGTCAGGCGGCGAAGAAGTTGAACAACCATGGGCATTG
AACATTCAACAAAACCACGAAGAGCCAGTCCTCAAGTTGTTCGCCCGACTTGCGCTGAGTTTGTCCCGAACGTGG
GCGACTGTGCAGCTGGAACCAGATCAAATGTATCACCGAGAAAGGGATACCGGCACCCACAAAGTCATGAACGAT
GGTGTCGGCCAAATGTCCCGGCGCCTGGCCAGCGAGATTGCTTCGTGCTTGGGGCTGACGGAGACACCAGCAGGT
TATCAAGGCCGAATTGGCTGTGCCAAGGGAATGTGGATCGTCGATGTCGAAGATGACGGCCTCGACGACGACATC
TGGATCGAAACGTATCCCTCTCAGAGGAAGTGGGCTTGTGACTGGCAGGATCTCGAGCATCGGTGCTTCGAAGTC
AAGACTTGGTCACGACAGGCAAAGCCAGCAGCACTGAACCAGCAGTTTATACCGCTGCTCGAGGCCCAGGCCATA
AGCCCCGGGCAAATGCGCGAGACAATCGCAGAACATATGAGAAGAAATCTCGCCGAGGAACTCGGCGGCCAGTCG
GCAGCATTGGGCAATCCAGAAGATCTGCGCCTGTGGGTGGATCGAGTCGGGCAGTCGAGAACTCTCATGCCGTTG
CACCGCAGCATCCCCCTTTTGGGCGGGCTTCCCGCAACCGACGAGGATCTTGTTGGCCTCCTGTTGGACGCGGGT
TTCGACCACCTGAAGCTCAAAATACTTCAGGGCGTCTTGTACGACATTGGCAAGAAGAAGGCCGATACTCTGAAA
GCAAAGACAAACGTGAGGATACCGCAGTCGACTTATCTCTTAATGGTGGCCGACTTCACCGGTACATTGGAAGAG
GGAGAAGTGCAGGTTTCGTTCTCGACCAAGTATAAAGTGGACGGATTCTGCGACACTCTTCTCGAAGAAATGGAT
GTCCTCGTGGCAAGATCGCCGGCCCATCTACCGAGCGACATCCAAAGAGTCAGGGCCATGTCATACCCTAGACTA
CGGAAGCTTAAGGATGTCGTCATCTTCTCGACGAAGGGCCGGACGCCACTGGCCGATCTGCTGTCGGGCGGTGAT
TATGATGGAGACCTGGCTTGGGTGTGCTGGGATCGCGATATCGTGAATAACTTTCGGAACGCTCCGCTGTTGACC
GCGCCCGATCAGATATCTCGCAACCTCTTCGATCGTGGCTACGTGAAGAAGCTGGCAACGAAGGTGGGCGAGATT
CTAAAAGAGCAGAGGACTGTCCAAGCGATGTGCGATAAGTTCGTGTTTTCCGGGTTCTACTTCAACATGCAGCAG
TCTCATCTCGGAATGATCACCAAATACAAGGAGAAGCTTTGCTACCACCGGGACTCGGCTGGCAGCGACTCGGCC
ATCCAACTGAGTGCCCTGCTTGGTCTCCTTGTGGATCAGGGCAAGCAGGGCATTATTTTCTCTGGCAAACACTGG
GACAAGTTTCGTCGGGAAGTCATCAATGGACCACCCGGCCTGGATGACCCGGAATATTTCGGAGAAAGGCCAACG
AACACGCCAACGAAGCATGGCAGACGGCATATCCTGGACTATCTGAAGTTCCAAGTGGCCGAACAGGCCGTCAAC
GACAACCTGACCATGTTCCAGAGCGCAATATCCTCACGTGGGGGGCAAGAGTACGACGCAGACTTGACGAAAATG
TATAATGACTATGAGCTGAGGGCAGAGAATTCTGAGACTTGTCGCCAGCTTCTGAAGTGTCTGCGCGCAGACATT
GACGCAGTGAAGGTGATGTGGCAAAAAGTGATAACGAAAAGCGACAAGGAAGGCGAGAGCGACTACACGACCAAG
GTGAACGAGGTTTATCGCAAGTGGATGGATATTGACCCTCCTGAAGAGCTGCAGTCGTCCGACCTTGTGCAAATG
CTCAAGGAAGGCTGGAGCAGAGACCCTCACTCGTCCCCGTGGGCCTTACTCAAAGCCTCGGCGACTTTCAGGTAT
CACCACAAGGTGCAATCTTTCACATGGCGAATGGCGGGCATGCAGCTATGCTACTTAAAGTCTAAAATGGCAGCA
AAGACGCTACCAGCGGCCATTGTGCAGCTGGGCATGTGGGCATGTCTCCGGGCGGACAAGAAGAGCATAATGGCC
CGCAGCGCGCAGCGACGAGAGTCTATGAGGGAGGGCGAAAGCTTCGCAGCACTTGACCTCGACGAGCGAATGGAG
GACGATGGGTATGGCTATGAGATTGATGATACCTGA
Gene >Hirsu2|7000
ATGGAAAGCGTTCTTCGTCCGGAGCGTCAAAAAGACGAGTCAGGCGGCGAAGAAGTTGAACAACCAGTACTTTCA
AAGGGTTTATTTCTTCGCAACTGATGGCGACACCTTTCGGGTGCCGGCCTCTCGAGACAAAGTCCCGCCTGCCGC
CGAAGCTTCAACGCCTGGAACCCGTACCAAGTTCAGTCGCAGAGACTTCTTGCAGTGGGCATTGAACATTCAACA
AAACCACGAAGAGCCAGTCCTCAAGTTGTTCGCCCGACTTGCGCTGAGTAAGTCACCACCCGTTCAATGTCCAAT
GCCTCTCTGCAAGCTACGTGTACTCATGATCACTCCTAGGTTTGTCCCGAACGTGGGCGACTGTGCAGCTGGAAC
CAGATCAAATGTATCACCGAGAAAGGGATACCGGCACCCACAAAGTCATGAACGATGGTGTCGGCCAAATGTCCC
GGCGCCTGGCCAGCGAGATTGCTTCGTGCTTGGGGCTGACGGAGACACCAGCAGGTTATCAAGGCCGAATTGGCT
GTGCCAAGGGAATGTGGATCGTCGATGTCGAAGATGACGGCCTCGACGACGACATCTGGATCGAAACGTATCCCT
CTCAGAGGAAGTGGGCTTGTGACTGGCAGGATCTCGAGCATCGGTGCTTCGAAGTCAAGACTTGGTCACGACAGG
CAAAGCCAGCAGCACTGAACCAGCAGTTTATACCGCTGCTCGAGGCCCAGGCCATAAGCCCCGGGCAAATGCGCG
AGACAATCGCAGAACATATGAGAAGAAATCTCGCCGAGGAACTCGGCGGCCAGTCGGCAGCATTGGGCAATCCAG
AAGATCTGCGCCTGTGGGTGGATCGAGTCGGGCAGTCGAGAACTCTCATGCCGTTGCACCGCAGCATCCCCCTTT
TGGGCGGGCTTCCCGCAACCGACGAGGATCTTGTTGGCCTCCTGTTGGACGCGGGTTTCGACCACCTGAAGCTCA
AAATACTTCAGGGCGTCTTGTACGACATTGGCAAGAAGAAGGCCGATACTCTGAAAGCAAAGACAAACGTGAGGA
TACCGCAGTCGACTTATCTCTTAATGGTGGCCGACTTCACCGGTACATTGGAAGAGGGAGAAGTGCAGGTTTCGT
TCTCGACCAAGTATAAAGTGGACGGATTCTGCGACACTCTTCTCGAAGAAATGGATGTCCTCGTGGCAAGATCGC
CGGCCCATCTACCGAGCGACATCCAAAGAGTCAGGGCCATGTCATACCCTAGACTACGGAAGCTTAAGGATGTCG
TCATCTTCTCGACGAAGGGCCGGACGCCACTGGCCGATCTGCTGTCGGGCGGTGATTATGATGGAGACCTGGCTT
GGGTGTGCTGGGATCGCGATATCGTGAATAACTTTCGGAACGCTCCGCTGTTGACCGCGCCCGATCAGATATCTC
GCAACCTCTTCGATCGTGGCTACGTGAAGAAGCTGGCAACGAAGGTGGGCGAGATTCTAAAAGAGCAGAGGACTG
TCCAAGCGATGTGCGATAAGTTCGTGTTTTCCGGGTTCTACTTCAACATGCAGCAGTCTCATCTCGGAATGATCA
CCAAATACAAGGAGAAGCTTTGCTACCACCGGGACTCGGCTGGCAGCGACTCGGCCATCCAACTGAGTGCCCTGC
TTGGTCTCCTTGTGGATCAGGGCAAGCAGGGCATTATTTTCTCTGGCAAACACTGGGACAAGTTTCGTCGGGAAG
TCATCAATGGACCACCCGGCCTGGATGACCCGGAATATTTCGGAGAAAGGCCAACGAACACGCCAACGAAGCATG
GCAGACGGCATATCCTGGACTATCTGAAGTTCCAAGTGGCCGAACAGGCCGTCAACGACAACCTGACCATGTTCC
AGAGCGCAATATCCTCACGTGGGGGGCAAGAGTACGACGCAGACTTGACGAAAATGTATAATGACTATGAGCTGA
GGGCAGAGAATTCTGAGACTTGTCGCCAGCTTCTGAAGTGTCTGCGCGCAGACATTGACGCAGTGAAGGTGATGT
GGCAAAAAGTGATAACGAAAAGCGACAAGGAAGGCGAGAGCGACTACACGACCAAGGTGAACGAGGTTTATCGCA
AGTGGATGGATATTGACCCTCCTGAAGAGCTGCAGTCGTCCGACCTTGTGCAAATGCTCAAGGAAGGCTGGAGCA
GAGACCCTCACTCGTCCCCGTGGGCCTTACTCAAAGCCTCGGCGACTTTCAGGTATCACCACAAGGTGCAATCTT
TCACATGGCGAATGGCGGGCATGCAGCTATGCTACTTAAAGTCTAAAATGGCAGCAAAGACGCTACCAGCGGCCA
TTGTGCAGCTGGGCATGTGGGCATGTCTCCGGGCGGACAAGAAGAGCATAATGGCCCGCAGCGCGCAGCGACGAG
AGTCTATGAGGGAGGGCGAAAGCTTCGCAGCACTTGACCTCGACGAGCGAATGGAGGACGATGGGTATGGCTATG
AGATTGATGATACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail