© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6987 |
| Gene name | |
| Location | Contig_384:2030..3631 |
| Strand | - |
| Gene length (bp) | 1601 |
| Transcript length (bp) | 1533 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05653 | Mg_trans_NIPA | Magnesium transporter NIPA | 5.3E-16 | 15 | 308 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8RWF4|NIPA8_ARATH | Probable magnesium transporter NIPA8 OS=Arabidopsis thaliana GN=At3g26670 PE=2 SV=1 | 11 | 305 | 5.0E-13 |
| sp|Q9LIR9|NIPA1_ARATH | Probable magnesium transporter NIPA1 OS=Arabidopsis thaliana GN=At3g23870 PE=2 SV=1 | 44 | 308 | 8.0E-09 |
| sp|B3LFA3|NIPA2_ARATH | Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 SV=1 | 59 | 308 | 2.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015693 | magnesium ion transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015095 | magnesium ion transmembrane transporter activity | Yes |
| GO:0005215 | transporter activity | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0030001 | metal ion transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006812 | cation transport | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 86 | 105 | 19 |
| 4 | 112 | 134 | 22 |
| 5 | 154 | 176 | 22 |
| 6 | 227 | 249 | 22 |
| 7 | 259 | 281 | 22 |
| 8 | 288 | 310 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6987 MGSLGGISPGGSIALGILVGLMSTSVQSLGLTLQRKSHILEDEKGPHDVRRPPYRRRRWQLGMAMFIIANLLGST VQISTLPLPVLSTLQAAGLVFNSICATLILSEPFTRWSLCGTVLVTTGAILIAIFGAIPSPAHNLDELLELLARK PFVAWMILQAFFVVGIAVVVDVVNSMSSLSHNSRFRLVRGIMYGVISGDLSAHALLFAKSAVELIIKTIGGNNQF SHWASWMIVLALVALALCQLYYLHRGLKLVSTSVLYPLVFCVYNIVAILDGLIYFNQTGLISPLRACLITLGTII LLSGVLALSWRLSDEQHPPGVGQSTLAPGLGLVEDTEGEEESLLGSEAAVEDDVTPTYQTFPAVDGETTPMTPTR KKTFRWLERAEIWGELEDQREAATPIGRLRSSTVPGRTELSPLLSSARRAGSGSSETVEAGPSSESTPRRAGRRR RRSTGFPGLVARKHLRRSSSTSGSLRNMLSLGWWTNRGSRGSVSSFSRSQARDRDPEGDG* |
| Coding | >Hirsu2|6987 ATGGGATCTTTGGGTGGCATCTCCCCCGGCGGGAGCATAGCTCTCGGGATCCTCGTCGGTCTGATGTCGACCAGC GTCCAGAGCCTCGGCCTGACGCTGCAGCGCAAGTCGCATATCCTCGAAGACGAAAAGGGCCCGCACGACGTGCGC CGCCCGCCCTACCGACGGCGGCGATGGCAGCTGGGCATGGCCATGTTCATCATTGCCAATCTGCTGGGGAGCACG GTGCAGATCTCGACGCTGCCGCTGCCCGTCCTCTCCACCCTCCAGGCCGCGGGCCTGGTCTTCAACTCGATATGC GCCACGCTGATCCTCAGCGAGCCCTTCACACGCTGGTCCCTCTGCGGCACCGTCCTCGTCACGACCGGGGCCATC CTCATCGCCATCTTCGGCGCCATTCCCTCTCCCGCCCACAACCTGGATGAGCTTCTGGAACTGCTGGCCCGAAAG CCCTTTGTCGCGTGGATGATTCTCCAGGCGTTCTTCGTCGTCGGCATCGCCGTCGTCGTAGACGTCGTCAACAGC ATGTCCAGCCTCTCGCACAATTCCCGGTTCCGCCTGGTGCGCGGCATCATGTACGGCGTCATCAGCGGCGACCTG TCCGCCCACGCGCTGCTCTTCGCCAAATCCGCCGTCGAGCTCATCATCAAGACCATCGGCGGCAACAACCAGTTC TCCCACTGGGCCTCGTGGATGATCGTCCTGGCGCTCGTCGCCCTGGCGCTGTGCCAGCTATACTACCTCCATCGT GGCCTGAAACTCGTCTCCACGTCGGTCCTCTACCCCCTCGTGTTCTGCGTCTACAACATCGTCGCCATCCTCGAC GGCTTAATATACTTCAACCAGACGGGCCTCATATCGCCGCTGCGCGCCTGTCTCATCACGCTCGGGACCATCATC CTGCTGTCGGGCGTCCTGGCCCTGTCGTGGCGGCTGAGCGACGAGCAGCACCCGCCGGGCGTCGGCCAGTCGACG CTGGCGCCCGGGCTGGGCCTCGTCGAGGACACGGAGGGGGAGGAAGAATCGCTGCTCGGGTCGGAGGCGGCGGTC GAGGACGACGTGACGCCGACGTACCAGACGTTTCCGGCCGTCGACGGCGAGACGACGCCGATGACGCCGACGCGC AAGAAGACGTTCCGCTGGCTCGAACGCGCCGAGATCTGGGGCGAGCTGGAGGACCAACGAGAGGCGGCGACGCCG ATCGGCAGGCTGCGGTCGAGCACCGTGCCCGGCCGGACCGAGCTCTCGCCCCTGCTGTCGAGCGCGCGGAGAGCG GGAAGCGGCTCGTCGGAGACGGTCGAGGCGGGACCCAGCTCGGAGTCGACACCCCGGAGGGCCGGCCGGCGGCGG AGAAGGAGCACCGGATTCCCCGGGCTGGTGGCGCGGAAGCACCTGAGGCGAAGCTCGTCGACGTCGGGCTCGCTG CGCAACATGCTTTCGCTGGGCTGGTGGACGAACCGAGGCAGCCGTGGGTCGGTCAGCAGCTTCTCACGATCACAG GCCCGAGATCGCGACCCGGAAGGAGACGGGTAG |
| Transcript | >Hirsu2|6987 ATGGGATCTTTGGGTGGCATCTCCCCCGGCGGGAGCATAGCTCTCGGGATCCTCGTCGGTCTGATGTCGACCAGC GTCCAGAGCCTCGGCCTGACGCTGCAGCGCAAGTCGCATATCCTCGAAGACGAAAAGGGCCCGCACGACGTGCGC CGCCCGCCCTACCGACGGCGGCGATGGCAGCTGGGCATGGCCATGTTCATCATTGCCAATCTGCTGGGGAGCACG GTGCAGATCTCGACGCTGCCGCTGCCCGTCCTCTCCACCCTCCAGGCCGCGGGCCTGGTCTTCAACTCGATATGC GCCACGCTGATCCTCAGCGAGCCCTTCACACGCTGGTCCCTCTGCGGCACCGTCCTCGTCACGACCGGGGCCATC CTCATCGCCATCTTCGGCGCCATTCCCTCTCCCGCCCACAACCTGGATGAGCTTCTGGAACTGCTGGCCCGAAAG CCCTTTGTCGCGTGGATGATTCTCCAGGCGTTCTTCGTCGTCGGCATCGCCGTCGTCGTAGACGTCGTCAACAGC ATGTCCAGCCTCTCGCACAATTCCCGGTTCCGCCTGGTGCGCGGCATCATGTACGGCGTCATCAGCGGCGACCTG TCCGCCCACGCGCTGCTCTTCGCCAAATCCGCCGTCGAGCTCATCATCAAGACCATCGGCGGCAACAACCAGTTC TCCCACTGGGCCTCGTGGATGATCGTCCTGGCGCTCGTCGCCCTGGCGCTGTGCCAGCTATACTACCTCCATCGT GGCCTGAAACTCGTCTCCACGTCGGTCCTCTACCCCCTCGTGTTCTGCGTCTACAACATCGTCGCCATCCTCGAC GGCTTAATATACTTCAACCAGACGGGCCTCATATCGCCGCTGCGCGCCTGTCTCATCACGCTCGGGACCATCATC CTGCTGTCGGGCGTCCTGGCCCTGTCGTGGCGGCTGAGCGACGAGCAGCACCCGCCGGGCGTCGGCCAGTCGACG CTGGCGCCCGGGCTGGGCCTCGTCGAGGACACGGAGGGGGAGGAAGAATCGCTGCTCGGGTCGGAGGCGGCGGTC GAGGACGACGTGACGCCGACGTACCAGACGTTTCCGGCCGTCGACGGCGAGACGACGCCGATGACGCCGACGCGC AAGAAGACGTTCCGCTGGCTCGAACGCGCCGAGATCTGGGGCGAGCTGGAGGACCAACGAGAGGCGGCGACGCCG ATCGGCAGGCTGCGGTCGAGCACCGTGCCCGGCCGGACCGAGCTCTCGCCCCTGCTGTCGAGCGCGCGGAGAGCG GGAAGCGGCTCGTCGGAGACGGTCGAGGCGGGACCCAGCTCGGAGTCGACACCCCGGAGGGCCGGCCGGCGGCGG AGAAGGAGCACCGGATTCCCCGGGCTGGTGGCGCGGAAGCACCTGAGGCGAAGCTCGTCGACGTCGGGCTCGCTG CGCAACATGCTTTCGCTGGGCTGGTGGACGAACCGAGGCAGCCGTGGGTCGGTCAGCAGCTTCTCACGATCACAG GCCCGAGATCGCGACCCGGAAGGAGACGGGTAG |
| Gene | >Hirsu2|6987 ATGGGATCTTTGGGTGGCATCTCCCCCGGCGGGAGCATAGCTGTATGCCCCGGCCGCCCGTACCGCGACGCGCGG CTGCCCGCTCTCTGCTAACGACACGGTCGCGACAGCTCGGGATCCTCGTCGGTCTGATGTCGACCAGCGTCCAGA GCCTCGGCCTGACGCTGCAGCGCAAGTCGCATATCCTCGAAGACGAAAAGGGCCCGCACGACGTGCGCCGCCCGC CCTACCGACGGCGGCGATGGCAGCTGGGCATGGCCATGTTCATCATTGCCAATCTGCTGGGGAGCACGGTGCAGA TCTCGACGCTGCCGCTGCCCGTCCTCTCCACCCTCCAGGCCGCGGGCCTGGTCTTCAACTCGATATGCGCCACGC TGATCCTCAGCGAGCCCTTCACACGCTGGTCCCTCTGCGGCACCGTCCTCGTCACGACCGGGGCCATCCTCATCG CCATCTTCGGCGCCATTCCCTCTCCCGCCCACAACCTGGATGAGCTTCTGGAACTGCTGGCCCGAAAGCCCTTTG TCGCGTGGATGATTCTCCAGGCGTTCTTCGTCGTCGGCATCGCCGTCGTCGTAGACGTCGTCAACAGCATGTCCA GCCTCTCGCACAATTCCCGGTTCCGCCTGGTGCGCGGCATCATGTACGGCGTCATCAGCGGCGACCTGTCCGCCC ACGCGCTGCTCTTCGCCAAATCCGCCGTCGAGCTCATCATCAAGACCATCGGCGGCAACAACCAGTTCTCCCACT GGGCCTCGTGGATGATCGTCCTGGCGCTCGTCGCCCTGGCGCTGTGCCAGCTATACTACCTCCATCGTGGCCTGA AACTCGTCTCCACGTCGGTCCTCTACCCCCTCGTGTTCTGCGTCTACAACATCGTCGCCATCCTCGACGGCTTAA TATACTTCAACCAGACGGGCCTCATATCGCCGCTGCGCGCCTGTCTCATCACGCTCGGGACCATCATCCTGCTGT CGGGCGTCCTGGCCCTGTCGTGGCGGCTGAGCGACGAGCAGCACCCGCCGGGCGTCGGCCAGTCGACGCTGGCGC CCGGGCTGGGCCTCGTCGAGGACACGGAGGGGGAGGAAGAATCGCTGCTCGGGTCGGAGGCGGCGGTCGAGGACG ACGTGACGCCGACGTACCAGACGTTTCCGGCCGTCGACGGCGAGACGACGCCGATGACGCCGACGCGCAAGAAGA CGTTCCGCTGGCTCGAACGCGCCGAGATCTGGGGCGAGCTGGAGGACCAACGAGAGGCGGCGACGCCGATCGGCA GGCTGCGGTCGAGCACCGTGCCCGGCCGGACCGAGCTCTCGCCCCTGCTGTCGAGCGCGCGGAGAGCGGGAAGCG GCTCGTCGGAGACGGTCGAGGCGGGACCCAGCTCGGAGTCGACACCCCGGAGGGCCGGCCGGCGGCGGAGAAGGA GCACCGGATTCCCCGGGCTGGTGGCGCGGAAGCACCTGAGGCGAAGCTCGTCGACGTCGGGCTCGCTGCGCAACA TGCTTTCGCTGGGCTGGTGGACGAACCGAGGCAGCCGTGGGTCGGTCAGCAGCTTCTCACGATCACAGGCCCGAG ATCGCGACCCGGAAGGAGACGGGTAG |