Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6930
Gene name
LocationContig_378:939..1247
Strand+
Gene length (bp)308
Transcript length (bp)231
Coding sequence length (bp)231
Protein length (aa) 77

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum Signal peptide|Transmembrane domain 0.1566 0.1539 0.182 0.1319 0.4143 0.0427 0.8914 0.2762 0.2594 0.0323

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 5 24 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup10255
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|6930 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6930
MPSLSAATLLLLVLAGLGLYHVVLRPPRLAEFSGRADVLRRSGDYRQIPGPVLAAFMGEKGVRQRYAIANVGQFL
F*
Coding >Hirsu2|6930
ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG
CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC
CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCCTT
TTCTAG
Transcript >Hirsu2|6930
ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG
CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC
CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCCTT
TTCTAG
Gene >Hirsu2|6930
ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG
CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC
CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGTCATCTCGAGCGACGGTTCGGCGCGCCTTCGACCACGCCGCCAA
CGCCTGCCAGCAGCGCCGGCGTGCCCGTCCAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCC
TTTTCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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