Protein ID | Hirsu2|6930 |
Gene name | |
Location | Contig_378:939..1247 |
Strand | + |
Gene length (bp) | 308 |
Transcript length (bp) | 231 |
Coding sequence length (bp) | 231 |
Protein length (aa) | 77 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1566 | 0.1539 | 0.182 | 0.1319 | 0.4143 | 0.0427 | 0.8914 | 0.2762 | 0.2594 | 0.0323 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 24 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 10255 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|6930 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6930 MPSLSAATLLLLVLAGLGLYHVVLRPPRLAEFSGRADVLRRSGDYRQIPGPVLAAFMGEKGVRQRYAIANVGQFL F* |
Coding | >Hirsu2|6930 ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCCTT TTCTAG |
Transcript | >Hirsu2|6930 ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCCTT TTCTAG |
Gene | >Hirsu2|6930 ATGCCGTCCCTGTCCGCGGCGACGCTGCTGCTGCTGGTCCTGGCCGGCCTCGGTCTCTACCACGTGGTGCTCCGG CCGCCGCGGCTGGCGGAGTTTTCGGGGCGCGCCGACGTCCTGCGCAGGAGCGGTGACTACCGTCAGATCCCGGGC CCGGTGCTGGCCGCCTTCATGGGCGAGAAGGTCATCTCGAGCGACGGTTCGGCGCGCCTTCGACCACGCCGCCAA CGCCTGCCAGCAGCGCCGGCGTGCCCGTCCAGGGGGTCCGGCAGCGGTACGCCATCGCCAACGTCGGCCAGTTCC TTTTCTAG |