Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6917
Gene name
LocationContig_376:21046..21427
Strand+
Gene length (bp)381
Transcript length (bp)381
Coding sequence length (bp)381
Protein length (aa) 127

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.6E-05 39 79

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 32 81 4.0E-19
sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 32 81 5.0E-19
sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 32 81 5.0E-19
sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 32 81 5.0E-19
sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 32 81 8.0E-19
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Swissprot ID Swissprot Description Start End E-value
sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 32 81 4.0E-19
sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 32 81 5.0E-19
sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 32 81 5.0E-19
sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 32 81 5.0E-19
sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 32 81 8.0E-19
sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3 32 78 3.0E-18
sp|Q27W01|RBM8A_RAT RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=1 SV=1 32 78 3.0E-18
sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1 32 78 3.0E-18
sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2 32 78 3.0E-18
sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1 32 78 1.0E-17
sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=3 SV=1 32 78 5.0E-17
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.4411 0.7687 0.2445 0.0413 0.1485 0.0108 0.0566 0.0321 0.0249 0.018

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5533
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4537
Ophiocordyceps australis map64 (Brazil) OphauB2|358
Ophiocordyceps camponoti-floridani Ophcf2|02442
Ophiocordyceps kimflemingae Ophio5|6038
Ophiocordyceps subramaniannii Hirsu2|6917 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6917
MADADMDIDQPASPPARNEAEMQTHTKATAVRSIEGWIVVVTNVHEEADEEAIQDKFGDFGEIKNLHLNLDRRSG
YVKVRAERQPPPPPHQHPSRQQQSATGGGRSRIPDGNFTLTRPPPHRRATR*
Coding >Hirsu2|6917
ATGGCAGACGCAGACATGGACATCGACCAGCCGGCGTCGCCGCCGGCGCGCAACGAGGCGGAGATGCAGACGCAC
ACGAAAGCCACGGCCGTGCGCTCCATCGAGGGCTGGATCGTCGTCGTCACCAACGTGCACGAGGAGGCCGACGAG
GAGGCCATCCAGGACAAGTTCGGCGACTTCGGCGAGATCAAGAACCTGCACCTGAACCTCGATCGCCGCAGCGGC
TACGTCAAGGTACGCGCAGAGCGGCAGCCACCACCCCCTCCCCACCAGCATCCTTCCAGGCAGCAGCAGAGCGCG
ACAGGAGGAGGCCGCTCACGGATTCCCGACGGGAACTTTACGCTGACGCGCCCTCCGCCGCACCGCAGGGCTACG
CGCTGA
Transcript >Hirsu2|6917
ATGGCAGACGCAGACATGGACATCGACCAGCCGGCGTCGCCGCCGGCGCGCAACGAGGCGGAGATGCAGACGCAC
ACGAAAGCCACGGCCGTGCGCTCCATCGAGGGCTGGATCGTCGTCGTCACCAACGTGCACGAGGAGGCCGACGAG
GAGGCCATCCAGGACAAGTTCGGCGACTTCGGCGAGATCAAGAACCTGCACCTGAACCTCGATCGCCGCAGCGGC
TACGTCAAGGTACGCGCAGAGCGGCAGCCACCACCCCCTCCCCACCAGCATCCTTCCAGGCAGCAGCAGAGCGCG
ACAGGAGGAGGCCGCTCACGGATTCCCGACGGGAACTTTACGCTGACGCGCCCTCCGCCGCACCGCAGGGCTACG
CGCTGA
Gene >Hirsu2|6917
ATGGCAGACGCAGACATGGACATCGACCAGCCGGCGTCGCCGCCGGCGCGCAACGAGGCGGAGATGCAGACGCAC
ACGAAAGCCACGGCCGTGCGCTCCATCGAGGGCTGGATCGTCGTCGTCACCAACGTGCACGAGGAGGCCGACGAG
GAGGCCATCCAGGACAAGTTCGGCGACTTCGGCGAGATCAAGAACCTGCACCTGAACCTCGATCGCCGCAGCGGC
TACGTCAAGGTACGCGCAGAGCGGCAGCCACCACCCCCTCCCCACCAGCATCCTTCCAGGCAGCAGCAGAGCGCG
ACAGGAGGAGGCCGCTCACGGATTCCCGACGGGAACTTTACGCTGACGCGCCCTCCGCCGCACCGCAGGGCTACG
CGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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