Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6874
Gene name
LocationContig_370:17817..19533
Strand-
Gene length (bp)1716
Transcript length (bp)1530
Coding sequence length (bp)1530
Protein length (aa) 510

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01585 G-patch G-patch domain 2.6E-13 343 383
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-04 447 491

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2 306 506 1.0E-18
sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1 331 506 2.0E-15
sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1 331 506 7.0E-15
sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1 414 508 1.0E-08
sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2 414 508 1.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2 306 506 1.0E-18
sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1 331 506 2.0E-15
sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1 331 506 7.0E-15
sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1 414 508 1.0E-08
sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2 414 508 1.0E-08
sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=1 SV=2 414 508 1.0E-08
sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1 414 508 1.0E-08
sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1 414 508 2.0E-08
sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2 414 508 1.0E-07
sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2 414 506 5.0E-07
[Show less]

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.2976 0.9188 0.1129 0.0364 0.0439 0.0069 0.0455 0.0071 0.006 0.0004

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3575
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1586
Ophiocordyceps australis map64 (Brazil) OphauB2|8002
Ophiocordyceps camponoti-floridani Ophcf2|02033
Ophiocordyceps camponoti-rufipedis Ophun1|5500
Ophiocordyceps kimflemingae Ophio5|6780
Ophiocordyceps subramaniannii Hirsu2|6874 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6874
MAAPPPPPPPPPPARGGLSLYDNLHDPNDPAPAGTISAAPVLYGQAEAASAEAKKPVDPALRFQPQIRRPAVKQA
KAKPTFPKGIPKTISAPAAATAVAAAVPAAPKTTLADWTATEEDEWMYGAGERPQRGGRKRKRKKNQQDEPEDIN
WDEFYDPGKPTNVEQYLKSDEKVSEVLEWKALLYRHRKRQYRSDSSSDEDEDMERPPQNRFAPPPAHVFAPPPPP
SPPQPTPDDRTGEGAFARRLALSSDQAASPEAAPASQPPPSPPPPPPPRSPSPPPPAGSATISREPVLYAQPRAA
GNREEGEGEGESEGEDPQAAAGLGADSDSGGPSTRSRVPGQAGFAQRLMSKYGWTKGTGLGANESGIVNPLRVQV
EKRRKKADAEGGGWAEPGGKGKILGGRRKDEEGRFGKMSEVIVLRNMLESMPDLQGEIAGGLGQEIGEECGEKYG
RVERLFIDQDARQVFIKFTDQVSALRAVNELDGRVFNGNAIAPRFYDAERFEQGDYGAP*
Coding >Hirsu2|6874
ATGGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTGCGCGAGGCGGGCTCTCGCTATACGACAACCTGCAC
GACCCCAACGATCCAGCTCCCGCGGGAACGATATCCGCAGCGCCTGTCCTCTACGGCCAAGCCGAGGCCGCCTCC
GCCGAGGCCAAGAAGCCAGTCGACCCAGCCTTGCGCTTCCAGCCCCAAATCCGCCGGCCGGCCGTCAAGCAAGCC
AAGGCCAAGCCGACGTTTCCCAAGGGGATCCCCAAAACCATCTCGGCCCCCGCTGCTGCCACAGCCGTCGCCGCG
GCTGTCCCGGCCGCGCCGAAGACGACGCTCGCAGACTGGACGGCCACGGAGGAGGACGAGTGGATGTACGGCGCG
GGCGAGAGGCCTCAGCGAGGTGGTCGAAAGAGGAAACGAAAGAAGAACCAGCAGGACGAGCCCGAGGACATCAAC
TGGGACGAATTCTACGACCCAGGGAAGCCGACCAACGTTGAGCAGTACCTAAAAAGCGACGAGAAGGTGTCCGAG
GTGCTTGAATGGAAAGCACTGCTGTACAGGCACCGAAAGCGGCAGTATCGCAGTGACTCCTCGAGTGACGAGGAT
GAAGACATGGAGCGCCCCCCGCAGAACCGGTTTGCTCCCCCCCCAGCCCACGTGTTCGCGCCGCCGCCGCCGCCC
TCACCTCCACAGCCTACTCCCGACGACCGCACCGGCGAGGGTGCCTTTGCGCGCCGGCTGGCCTTGTCTTCAGAT
CAAGCTGCGTCGCCGGAGGCGGCCCCTGCCTCGCAACCACCACCTTCCCCGCCGCCGCCGCCGCCTCCCCGAAGC
CCCTCCCCTCCACCCCCTGCGGGCTCGGCCACCATATCGCGCGAACCCGTGCTATACGCGCAGCCGCGCGCTGCA
GGAAACAGAGAAGAGGGCGAGGGCGAGGGCGAGAGCGAGGGCGAAGATCCACAGGCGGCAGCCGGCCTTGGCGCC
GACTCCGACTCCGGCGGACCGTCGACGCGCTCCAGGGTGCCGGGCCAGGCCGGCTTCGCGCAGCGGCTGATGAGC
AAGTACGGCTGGACCAAGGGCACCGGCCTGGGCGCAAACGAGTCGGGCATCGTCAACCCGCTGCGGGTGCAGGTG
GAGAAGCGGCGGAAGAAGGCGGACGCCGAGGGCGGCGGCTGGGCCGAGCCCGGCGGCAAGGGCAAGATCCTCGGC
GGGCGGCGCAAGGACGAGGAGGGCCGCTTCGGCAAGATGAGCGAGGTGATCGTGCTGCGCAACATGCTGGAGAGC
ATGCCCGACCTGCAGGGCGAGATCGCCGGCGGCCTCGGCCAGGAGATCGGCGAGGAGTGCGGCGAGAAGTACGGC
CGCGTGGAACGGCTCTTCATCGACCAGGACGCGCGCCAGGTCTTCATCAAGTTCACGGACCAGGTGTCCGCCCTG
CGGGCCGTCAACGAGCTCGACGGGCGCGTCTTCAACGGCAACGCCATCGCCCCGCGCTTCTACGACGCCGAGCGC
TTCGAGCAGGGCGACTACGGCGCCCCTTAG
Transcript >Hirsu2|6874
ATGGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTGCGCGAGGCGGGCTCTCGCTATACGACAACCTGCAC
GACCCCAACGATCCAGCTCCCGCGGGAACGATATCCGCAGCGCCTGTCCTCTACGGCCAAGCCGAGGCCGCCTCC
GCCGAGGCCAAGAAGCCAGTCGACCCAGCCTTGCGCTTCCAGCCCCAAATCCGCCGGCCGGCCGTCAAGCAAGCC
AAGGCCAAGCCGACGTTTCCCAAGGGGATCCCCAAAACCATCTCGGCCCCCGCTGCTGCCACAGCCGTCGCCGCG
GCTGTCCCGGCCGCGCCGAAGACGACGCTCGCAGACTGGACGGCCACGGAGGAGGACGAGTGGATGTACGGCGCG
GGCGAGAGGCCTCAGCGAGGTGGTCGAAAGAGGAAACGAAAGAAGAACCAGCAGGACGAGCCCGAGGACATCAAC
TGGGACGAATTCTACGACCCAGGGAAGCCGACCAACGTTGAGCAGTACCTAAAAAGCGACGAGAAGGTGTCCGAG
GTGCTTGAATGGAAAGCACTGCTGTACAGGCACCGAAAGCGGCAGTATCGCAGTGACTCCTCGAGTGACGAGGAT
GAAGACATGGAGCGCCCCCCGCAGAACCGGTTTGCTCCCCCCCCAGCCCACGTGTTCGCGCCGCCGCCGCCGCCC
TCACCTCCACAGCCTACTCCCGACGACCGCACCGGCGAGGGTGCCTTTGCGCGCCGGCTGGCCTTGTCTTCAGAT
CAAGCTGCGTCGCCGGAGGCGGCCCCTGCCTCGCAACCACCACCTTCCCCGCCGCCGCCGCCGCCTCCCCGAAGC
CCCTCCCCTCCACCCCCTGCGGGCTCGGCCACCATATCGCGCGAACCCGTGCTATACGCGCAGCCGCGCGCTGCA
GGAAACAGAGAAGAGGGCGAGGGCGAGGGCGAGAGCGAGGGCGAAGATCCACAGGCGGCAGCCGGCCTTGGCGCC
GACTCCGACTCCGGCGGACCGTCGACGCGCTCCAGGGTGCCGGGCCAGGCCGGCTTCGCGCAGCGGCTGATGAGC
AAGTACGGCTGGACCAAGGGCACCGGCCTGGGCGCAAACGAGTCGGGCATCGTCAACCCGCTGCGGGTGCAGGTG
GAGAAGCGGCGGAAGAAGGCGGACGCCGAGGGCGGCGGCTGGGCCGAGCCCGGCGGCAAGGGCAAGATCCTCGGC
GGGCGGCGCAAGGACGAGGAGGGCCGCTTCGGCAAGATGAGCGAGGTGATCGTGCTGCGCAACATGCTGGAGAGC
ATGCCCGACCTGCAGGGCGAGATCGCCGGCGGCCTCGGCCAGGAGATCGGCGAGGAGTGCGGCGAGAAGTACGGC
CGCGTGGAACGGCTCTTCATCGACCAGGACGCGCGCCAGGTCTTCATCAAGTTCACGGACCAGGTGTCCGCCCTG
CGGGCCGTCAACGAGCTCGACGGGCGCGTCTTCAACGGCAACGCCATCGCCCCGCGCTTCTACGACGCCGAGCGC
TTCGAGCAGGGCGACTACGGCGCCCCTTAG
Gene >Hirsu2|6874
ATGGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTGCGCGAGGCGGGCTCTCGCTATACGACAACCTGCAC
GACCCCAACGATCCAGCTCCCGCGGGAACGATATCCGCAGCGCCTGTCCTCTACGGCCAAGCCGAGGCCGCCTCC
GCCGAGGCCAAGAAGCCAGTCGACCCAGCCTTGCGCTTCCAGCCCCAAATCCGCCGGCCGGCCGTCAAGCAAGCC
AAGGCCAAGCCGACGTTTCCCAAGGGGATCCCCAAAACCATCTCGGCCCCCGCTGCTGCCACAGCCGTCGCCGCG
GCTGTCCCGGCCGCGCCGAAGACGACGCTCGCAGACTGGACGGCCACGGAGGAGGACGAGTGGATGTACGGCGCG
GGCGAGAGGCCTCAGCGAGGTGGTCGAAAGAGGAAACGAAAGAAGAACCAGCAGGACGAGCCCGAGGACATCAAC
TGGGACGAATTCTACGACCCAGGGAAGCCGACCAACGTTGAGCAGTACCTAAAAAGCGACGAGAAGGTGTCCGAG
GTGCTTGAATGGAAAGCACTGCTGTACAGGCACCGAAAGCGGCAGTATCGCAGTGACTCCTCGAGTGACGAGGAT
GAAGACATGGAGCGCCCCCCGCAGAGTGAGTGTCTTTCGAACGGTTGGCTGTGAGGAAGGCCACTTGCTGACAGG
GTGTGCCTCAGACCGGTTTGCTCCCCCCCCAGCCCACGTGTTCGCGCCGCCGCCGCCGCCCTCACCTCCACAGCC
TACTCCCGACGACCGCACCGGCGAGGGTGCCTTTGCGCGCCGGCTGGCCTTGTCTTCAGATCAAGCTGCGTCGCC
GGAGGCGGCCCCTGCCTCGCAACCACCACCTTCCCCGCCGCCGCCGCCGCCTCCCCGAAGCCCCTCCCCTCCACC
CCCTGCGGGCTCGGCCACCATATCGCGCGAACCCGTGCTATACGCGCAGCCGCGCGCTGCAGGAAACAGAGAAGA
GGGCGAGGGCGAGGGCGAGAGCGAGGGCGAAGATCCACAGGCGGCAGCCGGCCTTGGCGCCGACTCCGACTCCGG
CGGACCGTCGACGCGCTCCAGGGTGCCGGGCCAGGCCGGCTTCGCGCAGCGGCTGATGAGCAAGTACGGCTGGAC
CAAGGGCACCGGCCTGGGCGCAAACGAGTCGGGCATCGTCAACCCGCTGCGGGTGCAGGTGGAGAAGCGGCGGAA
GAAGGCGGACGCCGAGGGCGGCGGCTGGGCCGAGCCCGGCGGCAAGGGCAAGATCCTCGGCGGGCGGCGCAAGGA
CGAGGAGGGCCGCTTCGGCAAGATGAGCGAGGTGATCGTGCTGCGCAACATGCTGGAGAGCATGCCCGACCTGCA
GGGCGAGATCGCCGGCGGCCTCGGCCAGGAGATCGGCGAGGAGTGCGGCGAGAAGGTGAGGCGCCCGCGCCCCGG
CCACGCAAGCCAAGCGCACACAACCAGCTAACGCGGGGAACACACAGTACGGCCGCGTGGAACGGCTCTTCATCG
ACCAGGACGCGCGCCAGGTCTTCATCAAGTTCACGGACCAGGTGTCCGCCCTGCGGGTACGTCCTGTCCCCCTCC
CCCTCCCCCCTCCCCTTTCGCTCGCTGACGGCGCGCCAGGCCGTCAACGAGCTCGACGGGCGCGTCTTCAACGGC
AACGCCATCGCCCCGCGCTTCTACGACGCCGAGCGCTTCGAGCAGGGCGACTACGGCGCCCCTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail