Protein ID | Hirsu2|6751 |
Gene name | |
Location | Contig_36:6530..7781 |
Strand | - |
Gene length (bp) | 1251 |
Transcript length (bp) | 1251 |
Coding sequence length (bp) | 1251 |
Protein length (aa) | 417 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01476 | LysM | LysM domain | 1.8E-07 | 117 | 161 |
PF01476 | LysM | LysM domain | 5.5E-06 | 174 | 221 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0922 | 0.0413 | 0.9499 | 0.0532 | 0.0376 | 0.0247 | 0.1584 | 0.1595 | 0.1182 | 0.0011 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 22 | 0.545791 |
Orthofinder run ID | 4 |
Orthogroup | 229 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6751 MASLRNLLLLGGSSVAFGAAVRHSRREEAPQVLKADVPFCNHTVAWEDSCWKIIQGTTVSYAELNEKNGGKLYTG NDSSKCYLEEHQVIQVPCSYAEKKRHRQPPALPGSERCKKTYDVQKGDVVHELARQHNVDRYNLIDWNELKNDTH PLIQIGQKLCVSIADFECAEKDLHTVVKGDDCYKIRSDPKVNITAEALERLNPNILNPGTCSIFPGQKLCLRHPK QEADKEDLKEADKKDQKRAGKKEAETDISIDLGVYGSANVNPTVEMVAAFYKMDLDRVGNGTMAAGFKFENFKLT VEEIEKRSRLMALVQAEKPRDSYTQALVKYEQKVIASYNGEFKVEGCNGSAGSCLITTSGPNKVKASASSDRGNS VVELAFDVVVGRSVRSVQAQGVSVSVDVETGVPPANDDTTC* |
Coding | >Hirsu2|6751 ATGGCTTCCCTCAGAAACCTGCTGCTCCTCGGCGGCAGCTCCGTCGCCTTCGGGGCCGCCGTCCGCCACAGCCGT CGCGAGGAGGCTCCTCAGGTCCTGAAAGCGGACGTCCCGTTCTGCAACCACACGGTGGCGTGGGAAGACAGCTGT TGGAAGATCATCCAGGGCACCACCGTCTCCTATGCCGAGCTCAACGAGAAGAACGGCGGCAAGCTGTACACAGGG AACGACTCCTCGAAATGCTACCTCGAGGAGCACCAGGTGATCCAAGTCCCCTGCAGTTACGCGGAGAAGAAGCGG CACAGGCAACCGCCGGCTCTCCCGGGCTCGGAGAGGTGCAAGAAGACGTACGATGTCCAGAAGGGTGACGTGGTC CACGAGCTTGCCCGGCAGCACAACGTCGACCGCTACAACCTGATCGACTGGAACGAGCTGAAGAATGATACTCAT CCCTTGATCCAAATCGGCCAGAAGCTGTGCGTGTCGATTGCCGACTTCGAGTGCGCGGAGAAGGACCTCCACACT GTTGTTAAAGGGGACGACTGCTACAAAATCCGCTCTGACCCCAAGGTGAACATCACCGCCGAGGCCCTGGAGCGC CTGAACCCCAACATCCTGAACCCGGGCACCTGCAGCATTTTCCCGGGCCAGAAGTTGTGCCTCCGCCACCCTAAA CAGGAGGCCGACAAGGAGGACCTGAAGGAGGCCGACAAGAAGGACCAGAAGCGGGCCGGCAAGAAGGAGGCCGAG ACCGACATCAGCATCGATCTCGGCGTCTACGGCTCGGCCAACGTCAACCCCACGGTTGAAATGGTCGCCGCCTTC TACAAAATGGACCTCGATCGTGTCGGTAACGGGACCATGGCCGCGGGTTTCAAGTTCGAAAACTTCAAGCTGACC GTCGAGGAGATCGAGAAGAGATCCCGCTTGATGGCTTTGGTTCAGGCCGAGAAGCCCCGTGATTCCTATACGCAG GCGCTTGTCAAGTACGAGCAGAAAGTCATCGCCAGCTACAACGGCGAGTTCAAGGTCGAGGGCTGCAACGGCTCT GCCGGCAGCTGCCTCATCACGACCTCGGGCCCGAACAAGGTCAAGGCCTCCGCTTCTTCCGACCGCGGCAACAGC GTGGTCGAGCTTGCCTTTGACGTCGTCGTGGGTCGCTCTGTCCGCTCTGTCCAGGCCCAGGGAGTTTCGGTCAGC GTCGACGTCGAGACCGGAGTCCCGCCCGCCAACGATGATACCACTTGCTAG |
Transcript | >Hirsu2|6751 ATGGCTTCCCTCAGAAACCTGCTGCTCCTCGGCGGCAGCTCCGTCGCCTTCGGGGCCGCCGTCCGCCACAGCCGT CGCGAGGAGGCTCCTCAGGTCCTGAAAGCGGACGTCCCGTTCTGCAACCACACGGTGGCGTGGGAAGACAGCTGT TGGAAGATCATCCAGGGCACCACCGTCTCCTATGCCGAGCTCAACGAGAAGAACGGCGGCAAGCTGTACACAGGG AACGACTCCTCGAAATGCTACCTCGAGGAGCACCAGGTGATCCAAGTCCCCTGCAGTTACGCGGAGAAGAAGCGG CACAGGCAACCGCCGGCTCTCCCGGGCTCGGAGAGGTGCAAGAAGACGTACGATGTCCAGAAGGGTGACGTGGTC CACGAGCTTGCCCGGCAGCACAACGTCGACCGCTACAACCTGATCGACTGGAACGAGCTGAAGAATGATACTCAT CCCTTGATCCAAATCGGCCAGAAGCTGTGCGTGTCGATTGCCGACTTCGAGTGCGCGGAGAAGGACCTCCACACT GTTGTTAAAGGGGACGACTGCTACAAAATCCGCTCTGACCCCAAGGTGAACATCACCGCCGAGGCCCTGGAGCGC CTGAACCCCAACATCCTGAACCCGGGCACCTGCAGCATTTTCCCGGGCCAGAAGTTGTGCCTCCGCCACCCTAAA CAGGAGGCCGACAAGGAGGACCTGAAGGAGGCCGACAAGAAGGACCAGAAGCGGGCCGGCAAGAAGGAGGCCGAG ACCGACATCAGCATCGATCTCGGCGTCTACGGCTCGGCCAACGTCAACCCCACGGTTGAAATGGTCGCCGCCTTC TACAAAATGGACCTCGATCGTGTCGGTAACGGGACCATGGCCGCGGGTTTCAAGTTCGAAAACTTCAAGCTGACC GTCGAGGAGATCGAGAAGAGATCCCGCTTGATGGCTTTGGTTCAGGCCGAGAAGCCCCGTGATTCCTATACGCAG GCGCTTGTCAAGTACGAGCAGAAAGTCATCGCCAGCTACAACGGCGAGTTCAAGGTCGAGGGCTGCAACGGCTCT GCCGGCAGCTGCCTCATCACGACCTCGGGCCCGAACAAGGTCAAGGCCTCCGCTTCTTCCGACCGCGGCAACAGC GTGGTCGAGCTTGCCTTTGACGTCGTCGTGGGTCGCTCTGTCCGCTCTGTCCAGGCCCAGGGAGTTTCGGTCAGC GTCGACGTCGAGACCGGAGTCCCGCCCGCCAACGATGATACCACTTGCTAG |
Gene | >Hirsu2|6751 ATGGCTTCCCTCAGAAACCTGCTGCTCCTCGGCGGCAGCTCCGTCGCCTTCGGGGCCGCCGTCCGCCACAGCCGT CGCGAGGAGGCTCCTCAGGTCCTGAAAGCGGACGTCCCGTTCTGCAACCACACGGTGGCGTGGGAAGACAGCTGT TGGAAGATCATCCAGGGCACCACCGTCTCCTATGCCGAGCTCAACGAGAAGAACGGCGGCAAGCTGTACACAGGG AACGACTCCTCGAAATGCTACCTCGAGGAGCACCAGGTGATCCAAGTCCCCTGCAGTTACGCGGAGAAGAAGCGG CACAGGCAACCGCCGGCTCTCCCGGGCTCGGAGAGGTGCAAGAAGACGTACGATGTCCAGAAGGGTGACGTGGTC CACGAGCTTGCCCGGCAGCACAACGTCGACCGCTACAACCTGATCGACTGGAACGAGCTGAAGAATGATACTCAT CCCTTGATCCAAATCGGCCAGAAGCTGTGCGTGTCGATTGCCGACTTCGAGTGCGCGGAGAAGGACCTCCACACT GTTGTTAAAGGGGACGACTGCTACAAAATCCGCTCTGACCCCAAGGTGAACATCACCGCCGAGGCCCTGGAGCGC CTGAACCCCAACATCCTGAACCCGGGCACCTGCAGCATTTTCCCGGGCCAGAAGTTGTGCCTCCGCCACCCTAAA CAGGAGGCCGACAAGGAGGACCTGAAGGAGGCCGACAAGAAGGACCAGAAGCGGGCCGGCAAGAAGGAGGCCGAG ACCGACATCAGCATCGATCTCGGCGTCTACGGCTCGGCCAACGTCAACCCCACGGTTGAAATGGTCGCCGCCTTC TACAAAATGGACCTCGATCGTGTCGGTAACGGGACCATGGCCGCGGGTTTCAAGTTCGAAAACTTCAAGCTGACC GTCGAGGAGATCGAGAAGAGATCCCGCTTGATGGCTTTGGTTCAGGCCGAGAAGCCCCGTGATTCCTATACGCAG GCGCTTGTCAAGTACGAGCAGAAAGTCATCGCCAGCTACAACGGCGAGTTCAAGGTCGAGGGCTGCAACGGCTCT GCCGGCAGCTGCCTCATCACGACCTCGGGCCCGAACAAGGTCAAGGCCTCCGCTTCTTCCGACCGCGGCAACAGC GTGGTCGAGCTTGCCTTTGACGTCGTCGTGGGTCGCTCTGTCCGCTCTGTCCAGGCCCAGGGAGTTTCGGTCAGC GTCGACGTCGAGACCGGAGTCCCGCCCGCCAACGATGATACCACTTGCTAG |