© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6750 |
| Gene name | |
| Location | Contig_36:3529..4683 |
| Strand | + |
| Gene length (bp) | 1154 |
| Transcript length (bp) | 939 |
| Coding sequence length (bp) | 939 |
| Protein length (aa) | 313 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 2.8E-23 | 9 | 287 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 192 | 214 | 22 |
| 3 | 221 | 243 | 22 |
| 4 | 273 | 295 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6750 MLPPSRLVVILPLVLAFVSFVLSSITLFSGHKQGFMEDYAIVRLNTSMIGHNLVDKAKDGGAKGDEGKDGPLGRL QSWWDDKKSDAKDKIDSAKGKVAGKIAGKIGLSQWYSLHIMDACEGSFEPDPTAPNAGLNTTNCTTSAPAHRLNL TQILDHKLNVGRLGVGLNDLGWTDSVQDKLDILNDTLLGLFIVYVLGMGLSGLSMLLNLAALFLLGKSGAVVLAN FMAASLAALCCIIGSVITTAAGSKAVDQINKRGARVGLAAERGSKFYIIGWITTGFMFAVTAFWLVQFLLLRRKR AAVLKTMEKGGS* |
| Coding | >Hirsu2|6750 ATGCTCCCGCCGTCTAGACTCGTCGTGATCCTGCCCCTGGTCCTCGCCTTCGTCAGCTTCGTCCTCTCGTCCATC ACCCTCTTCTCCGGCCACAAGCAAGGGTTCATGGAGGACTATGCCATCGTCAGGCTGAACACGTCCATGATCGGA CACAACCTCGTCGATAAGGCCAAGGACGGAGGCGCAAAGGGCGACGAGGGGAAAGATGGCCCACTCGGCCGCCTC CAGAGCTGGTGGGACGACAAGAAGTCGGATGCCAAGGACAAGATCGACAGCGCCAAGGGCAAAGTCGCCGGCAAG ATCGCCGGCAAGATCGGCCTGTCCCAGTGGTACTCGCTACACATCATGGATGCCTGCGAGGGCTCCTTCGAACCC GACCCGACGGCGCCAAACGCCGGCCTCAACACGACCAACTGCACCACATCGGCCCCAGCTCATCGTCTCAACCTG ACGCAGATCCTCGATCATAAGCTCAACGTGGGCCGCCTCGGCGTCGGCCTCAACGACCTCGGCTGGACCGACAGC GTCCAGGACAAGCTCGATATCCTCAACGACACCCTGCTCGGCCTCTTCATCGTCTACGTCCTCGGCATGGGCCTC AGCGGCCTGTCCATGCTGCTCAACCTGGCCGCCCTCTTCCTGCTCGGCAAGAGCGGAGCCGTCGTGCTGGCCAAT TTCATGGCCGCGTCGCTTGCCGCCCTGTGTTGCATCATCGGGAGCGTCATCACCACCGCGGCCGGCTCCAAGGCC GTGGACCAGATCAACAAGCGAGGCGCCCGGGTCGGGCTCGCCGCCGAACGCGGCTCCAAGTTTTACATCATCGGC TGGATCACGACGGGCTTCATGTTCGCCGTCACGGCCTTTTGGCTGGTGCAGTTCCTGCTCTTGCGGCGCAAGAGG GCGGCCGTCCTGAAGACGATGGAGAAGGGGGGCTCTTGA |
| Transcript | >Hirsu2|6750 ATGCTCCCGCCGTCTAGACTCGTCGTGATCCTGCCCCTGGTCCTCGCCTTCGTCAGCTTCGTCCTCTCGTCCATC ACCCTCTTCTCCGGCCACAAGCAAGGGTTCATGGAGGACTATGCCATCGTCAGGCTGAACACGTCCATGATCGGA CACAACCTCGTCGATAAGGCCAAGGACGGAGGCGCAAAGGGCGACGAGGGGAAAGATGGCCCACTCGGCCGCCTC CAGAGCTGGTGGGACGACAAGAAGTCGGATGCCAAGGACAAGATCGACAGCGCCAAGGGCAAAGTCGCCGGCAAG ATCGCCGGCAAGATCGGCCTGTCCCAGTGGTACTCGCTACACATCATGGATGCCTGCGAGGGCTCCTTCGAACCC GACCCGACGGCGCCAAACGCCGGCCTCAACACGACCAACTGCACCACATCGGCCCCAGCTCATCGTCTCAACCTG ACGCAGATCCTCGATCATAAGCTCAACGTGGGCCGCCTCGGCGTCGGCCTCAACGACCTCGGCTGGACCGACAGC GTCCAGGACAAGCTCGATATCCTCAACGACACCCTGCTCGGCCTCTTCATCGTCTACGTCCTCGGCATGGGCCTC AGCGGCCTGTCCATGCTGCTCAACCTGGCCGCCCTCTTCCTGCTCGGCAAGAGCGGAGCCGTCGTGCTGGCCAAT TTCATGGCCGCGTCGCTTGCCGCCCTGTGTTGCATCATCGGGAGCGTCATCACCACCGCGGCCGGCTCCAAGGCC GTGGACCAGATCAACAAGCGAGGCGCCCGGGTCGGGCTCGCCGCCGAACGCGGCTCCAAGTTTTACATCATCGGC TGGATCACGACGGGCTTCATGTTCGCCGTCACGGCCTTTTGGCTGGTGCAGTTCCTGCTCTTGCGGCGCAAGAGG GCGGCCGTCCTGAAGACGATGGAGAAGGGGGGCTCTTGA |
| Gene | >Hirsu2|6750 ATGCTCCCGCCGTCTAGACTCGTCGTGATCCTGCCCCTGGTCCTCGCCTTCGTCAGCTTCGTCCTCTCGTCCATC ACCCTCTTCTCCGGCCACAAGCAAGGGTTCATGGAGGACTATGCCATCGTCAGGGTAAGCACATACAAGTACAGC CGTCTCGGCCTCCATGCGGTTTCTCTCGCCCTTCGCAACGCAGTCTACGCCAGAAACACCGGCTGGGCGGCCGTC GCTCTCTTCCGTCGCGTGCTAACGCCATGCCTTCCGCAGCTGAACACGTCCATGATCGGACACAACCTCGTCGAT AAGGCCAAGGACGGAGGCGCAAAGGGCGACGAGGGGAAAGATGGCCCACTCGGCCGCCTCCAGAGCTGGTGGGAC GACAAGAAGTCGGATGCCAAGGACAAGATCGACAGCGCCAAGGGCAAAGTCGCCGGCAAGATCGCCGGCAAGATC GGCCTGTCCCAGTGGTACTCGCTACACATCATGGATGCCTGCGAGGGCTCCTTCGAACCCGACCCGACGGCGCCA AACGCCGGCCTCAACACGACCAACTGCACCACATCGGCCCCAGCTCGTAAGTCGGCCCTCACCCTCCCAAGCTGG CGCTCGAGGCCTCACTTAGCGAGACATCGGCTAATGACGCACTGCTCCCAGATCGTCTCAACCTGACGCAGATCC TCGATCATAAGCTCAACGTGGGCCGCCTCGGCGTCGGCCTCAACGACCTCGGCTGGACCGACAGCGTCCAGGACA AGCTCGATATCCTCAACGACACCCTGCTCGGCCTCTTCATCGTCTACGTCCTCGGCATGGGCCTCAGCGGCCTGT CCATGCTGCTCAACCTGGCCGCCCTCTTCCTGCTCGGCAAGAGCGGAGCCGTCGTGCTGGCCAATTTCATGGCCG CGTCGCTTGCCGCCCTGTGTTGCATCATCGGGAGCGTCATCACCACCGCGGCCGGCTCCAAGGCCGTGGACCAGA TCAACAAGCGAGGCGCCCGGGTCGGGCTCGCCGCCGAACGCGGCTCCAAGTTTTACATCATCGGCTGGATCACGA CGGGCTTCATGTTCGCCGTCACGGCCTTTTGGCTGGTGCAGTTCCTGCTCTTGCGGCGCAAGAGGGCGGCCGTCC TGAAGACGATGGAGAAGGGGGGCTCTTGA |