© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|670 |
| Gene name | |
| Location | Contig_1133:6697..7646 |
| Strand | + |
| Gene length (bp) | 949 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02913 | FAD-oxidase_C | FAD linked oxidases, C-terminal domain | 5.6E-10 | 59 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P56216|VAOX_PENSI | Vanillyl-alcohol oxidase OS=Penicillium simplicissimum GN=VAOA PE=1 SV=1 | 1 | 262 | 2.0E-94 |
| sp|P09788|DH4C_PSEPU | 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit OS=Pseudomonas putida GN=pchF PE=1 SV=3 | 16 | 250 | 3.0E-23 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0003824 | catalytic activity | Yes |
| GO:0050662 | coenzyme binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0048037 | cofactor binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|670 MILQNAASLRHIALDASHYHPRSEYTASPLDVPMTEEELDAAAKKVNLGRWVYIGAVYGPEPVRKALLEVTKKEM CKVPGSRFFHLEDRTEPHSTLHARAETMKGVPTWDELRWLKHWVPNCTFLSFSPISKVDGKVAMRQYEMAKERFR EAKLDFFGIFSIGMREMHNVVCVVYNREDADMRRRVQWLIRTLIRDYAANGWGEFRTHIGLMDQVADTYDFNDHA LRRLNESIKDALDPNGILAPGKSGIWPKGYDKTKWALGEDYIK* |
| Coding | >Hirsu2|670 ATGATACTCCAGAACGCCGCCAGCCTGCGGCACATTGCCCTCGATGCCTCACATTACCACCCGCGCTCAGAGTAC ACGGCATCGCCGCTGGACGTACCTATGACCGAAGAGGAGCTCGACGCCGCGGCAAAAAAGGTCAACCTCGGCCGC TGGGTCTACATTGGCGCCGTATACGGGCCCGAGCCCGTGCGCAAAGCCCTACTCGAGGTCACCAAGAAGGAGATG TGCAAGGTGCCCGGCAGCCGCTTCTTCCACCTCGAAGACCGCACGGAGCCTCATAGCACCCTGCACGCGCGCGCC GAGACCATGAAGGGCGTCCCTACGTGGGATGAACTGCGCTGGCTAAAGCACTGGGTCCCCAACTGCACCTTTCTC TCCTTTTCGCCCATCTCCAAGGTCGACGGCAAGGTGGCGATGCGCCAGTATGAGATGGCCAAGGAGCGCTTTCGC GAGGCCAAGCTCGACTTTTTTGGCATCTTCAGCATCGGCATGCGCGAGATGCACAACGTCGTGTGCGTCGTTTAC AACCGTGAGGACGCTGATATGCGCCGCCGCGTGCAGTGGCTGATACGCACCCTAATCCGCGACTACGCTGCCAAC GGCTGGGGCGAATTCCGCACGCATATCGGCCTCATGGACCAGGTCGCCGACACGTACGACTTCAACGACCACGCA CTGCGCCGCCTTAACGAGTCTATCAAGGACGCCCTGGACCCCAATGGAATCCTGGCCCCTGGAAAGAGTGGTATT TGGCCCAAGGGCTATGATAAGACCAAGTGGGCCCTAGGCGAGGATTATATAAAATAA |
| Transcript | >Hirsu2|670 ATGATACTCCAGAACGCCGCCAGCCTGCGGCACATTGCCCTCGATGCCTCACATTACCACCCGCGCTCAGAGTAC ACGGCATCGCCGCTGGACGTACCTATGACCGAAGAGGAGCTCGACGCCGCGGCAAAAAAGGTCAACCTCGGCCGC TGGGTCTACATTGGCGCCGTATACGGGCCCGAGCCCGTGCGCAAAGCCCTACTCGAGGTCACCAAGAAGGAGATG TGCAAGGTGCCCGGCAGCCGCTTCTTCCACCTCGAAGACCGCACGGAGCCTCATAGCACCCTGCACGCGCGCGCC GAGACCATGAAGGGCGTCCCTACGTGGGATGAACTGCGCTGGCTAAAGCACTGGGTCCCCAACTGCACCTTTCTC TCCTTTTCGCCCATCTCCAAGGTCGACGGCAAGGTGGCGATGCGCCAGTATGAGATGGCCAAGGAGCGCTTTCGC GAGGCCAAGCTCGACTTTTTTGGCATCTTCAGCATCGGCATGCGCGAGATGCACAACGTCGTGTGCGTCGTTTAC AACCGTGAGGACGCTGATATGCGCCGCCGCGTGCAGTGGCTGATACGCACCCTAATCCGCGACTACGCTGCCAAC GGCTGGGGCGAATTCCGCACGCATATCGGCCTCATGGACCAGGTCGCCGACACGTACGACTTCAACGACCACGCA CTGCGCCGCCTTAACGAGTCTATCAAGGACGCCCTGGACCCCAATGGAATCCTGGCCCCTGGAAAGAGTGGTATT TGGCCCAAGGGCTATGATAAGACCAAGTGGGCCCTAGGCGAGGATTATATAAAATAA |
| Gene | >Hirsu2|670 ATGATACTCCAGAACGCCGCCAGCCTGCGGCACATTGCCCTCGATGCCTCACATTACCACCCGCGCTCAGAGTAC ACGGCATCGCCGCTGGACGTACCTATGACCGAAGAGGAGCTCGACGCCGCGGCAAAAAAGGTCAACCTCGGCCGC TGGGTCTACATTGGCGCCGTATACGGGCCCGAGCCCGTGCGCAAAGCCCTACTCGAGGTCACCAAGAAGGAGATG TGCAAGGTGCCCGGCAGCCGCTTCTTCCACCTCGAAGACCGCACGGAGCCTCATAGCACCCTGCACGCGCGCGCC GAGACCATGAAGGGCGTCCCTACGTGGGATGAACTGCGCTGGCTAAAGCAGTAAGTTGGTTTGCTATTCTTTTTC TTCTCGGTTCATCGCCAGCTTGTATATCTTGCCTGACAGCTTACGCGAATACTCTCTTCAGCTGGGTCCCCAACT GCACCTTTCTCTCCTTTTCGCCCATCTCCAAGGTCGACGGCAAGGTGGCGATGCGCCAGTATGAGATGGCCAAGG AGCGCTTTCGCGAGGCCAAGCTCGACTTTTTTGGCATCTTCAGCATCGGCATGCGCGAGATGCGTGCGTCCTCCC GTCTGTATCGCATTAAATTACACGGACTGACTTGAATGCCCCAGACAACGTCGTGTGCGTCGTTTACAACCGTGA GGACGCTGATATGCGCCGCCGCGTGCAGTGGCTGATACGCACCCTAATCCGCGACTACGCTGCCAACGGCTGGGG CGAATTCCGCACGCATATCGGCCTCATGGACCAGGTCGCCGACACGTACGACTTCAACGACCACGCACTGCGCCG CCTTAACGAGTCTATCAAGGACGCCCTGGACCCCAATGGAATCCTGGCCCCTGGAAAGAGTGGTATTTGGCCCAA GGGCTATGATAAGACCAAGTGGGCCCTAGGCGAGGATTATATAAAATAA |