Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6681
Gene name
LocationContig_35:48070..49573
Strand+
Gene length (bp)1503
Transcript length (bp)918
Coding sequence length (bp)918
Protein length (aa) 306

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-16 92 161

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9JJW6|ALRF2_MOUSE Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 1 173 3.0E-18
sp|Q8L773|THO4A_ARATH THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 1 181 2.0E-17
sp|Q9URV0|YBLC_SCHPO Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=3 SV=1 5 299 1.0E-12
sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 51 168 2.0E-12
sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 49 168 2.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|Q9JJW6|ALRF2_MOUSE Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 1 173 3.0E-18
sp|Q8L773|THO4A_ARATH THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 1 181 2.0E-17
sp|Q9URV0|YBLC_SCHPO Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=3 SV=1 5 299 1.0E-12
sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 51 168 2.0E-12
sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 49 168 2.0E-12
sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 49 168 2.0E-12
sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2 1 276 1.0E-11
sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 1 168 1.0E-11
sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1 49 168 3.0E-11
sp|Q8L719|THO4B_ARATH THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 44 180 4.0E-11
sp|Q6NQ72|THO4D_ARATH THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1 89 165 2.0E-10
sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 51 168 2.0E-10
sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1 51 168 3.0E-10
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 89 169 2.0E-09
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 91 174 6.0E-09
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 91 174 1.0E-08
sp|Q9ZUU4|CP29B_ARATH RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 91 171 2.0E-08
sp|Q9CAE4|U1131_ARATH U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1 90 164 4.0E-08
sp|Q94EH8|THO4C_ARATH THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 83 165 1.0E-07
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 86 162 1.0E-07
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 86 162 1.0E-07
sp|B4LVR8|EI3G2_DROVI Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila virilis GN=eIF3-S4-2 PE=3 SV=1 90 152 2.0E-07
sp|B4K7S5|EI3G2_DROMO Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila mojavensis GN=eIF3-S4-2 PE=3 SV=1 90 152 3.0E-07
sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1 63 152 4.0E-07
sp|Q43349|CP29A_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2 91 174 5.0E-07
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 86 162 5.0E-07
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 59 174 6.0E-07
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 86 162 6.0E-07
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 86 162 6.0E-07
sp|B4JXU2|EI3G2_DROGR Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila grimshawi GN=eIF3-S4-2 PE=3 SV=1 92 152 7.0E-07
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 92 162 8.0E-07
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 84 162 9.0E-07
sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2 SV=1 80 173 9.0E-07
sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1 90 162 9.0E-07
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 84 162 9.0E-07
sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 77 173 9.0E-07
sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 77 173 9.0E-07
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 84 162 9.0E-07
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 91 171 9.0E-07
sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 90 162 1.0E-06
sp|Q9ZUU4|CP29B_ARATH RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 91 171 1.0E-06
sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1 90 170 1.0E-06
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 94 162 1.0E-06
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 94 162 1.0E-06
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 91 174 1.0E-06
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 94 162 1.0E-06
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 94 162 1.0E-06
sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 90 162 1.0E-06
sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 90 162 1.0E-06
sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 90 162 1.0E-06
sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 90 162 1.0E-06
sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 90 162 1.0E-06
sp|Q04836|CP31A_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 75 171 1.0E-06
sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 90 169 2.0E-06
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 91 162 2.0E-06
sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1 1 168 2.0E-06
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 91 171 2.0E-06
sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1 92 152 3.0E-06
sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1 86 165 3.0E-06
sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1 86 160 3.0E-06
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 86 162 3.0E-06
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 91 162 4.0E-06
sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 64 162 5.0E-06
sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a PE=1 SV=3 86 162 5.0E-06
sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 91 169 6.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.517 0.7468 0.0165 0.0259 0.0468 0.0049 0.0487 0.0074 0.0077 0.0029

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup3497
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2242
Ophiocordyceps australis map64 (Brazil) OphauB2|7646
Ophiocordyceps camponoti-floridani Ophcf2|00422
Ophiocordyceps camponoti-rufipedis Ophun1|7027
Ophiocordyceps kimflemingae Ophio5|6333
Ophiocordyceps subramaniannii Hirsu2|6681 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6681
MASKMDRGLDEIIADNRSSGPRNRRGGGDQRRRDRQDYPRDGVRKSVRTEPRSIDSEWVHDRYDDDRNSRRGPVA
PRRHESPVHNAPKGSRLRVENIHYDLGEDDLDELFTRIGPTTRLQLLYDRAGRSEGTAYVTYESREDAEEAIRQF
DGANANGQPIRLTLLPNRPARNPFDTAVMPSRPLAERISLPAQKSRSLSPRRRYDEDDAARKGIDRYIPDDDGRS
RSPMSSRRGGRRPGARREGMANDQQNSRGGRANPRTKKTQEELDAEMEDYFGGGSGSAAGAASTNGNGPAAANAD
IDMIE*
Coding >Hirsu2|6681
ATGGCCAGCAAGATGGATCGTGGTCTCGACGAGATCATCGCCGACAACCGCAGCAGTGGCCCTCGGAATCGACGC
GGCGGAGGTGATCAGCGTCGTCGCGACCGCCAGGATTATCCCCGCGATGGAGTGAGAAAGTCTGTCCGAACTGAG
CCCAGAAGCATTGACAGCGAATGGGTTCACGATCGCTACGACGACGACCGCAACTCCCGCAGAGGGCCTGTCGCC
CCACGTCGCCACGAATCTCCCGTTCACAACGCGCCCAAAGGATCGAGGCTCCGAGTCGAGAACATCCACTACGAT
CTTGGCGAAGACGACTTAGACGAGCTATTCACGAGAATCGGCCCCACAACTCGACTGCAGCTACTCTATGATCGT
GCAGGGCGGTCCGAGGGCACGGCCTACGTGACTTACGAGTCCAGGGAGGATGCCGAAGAAGCTATCCGGCAGTTC
GACGGCGCAAACGCCAACGGACAGCCAATTCGGCTGACCTTGCTGCCGAACCGCCCGGCCCGGAATCCCTTCGAC
ACGGCCGTCATGCCCAGTCGGCCCCTGGCGGAGCGCATCTCACTTCCCGCTCAGAAGTCGCGCTCCCTGTCTCCT
CGCCGACGGTACGACGAAGACGATGCGGCCCGGAAAGGGATCGACAGGTACATCCCGGACGACGATGGTCGCTCC
CGGAGTCCGATGTCGTCGCGGCGCGGAGGCCGTCGGCCCGGCGCCAGGCGCGAAGGCATGGCTAACGACCAGCAA
AACAGTCGTGGAGGTCGGGCCAACCCGCGGACCAAGAAGACGCAAGAAGAACTGGATGCAGAGATGGAGGATTAC
TTCGGAGGCGGTTCAGGCTCCGCGGCTGGTGCAGCGTCCACCAACGGCAACGGCCCCGCCGCTGCAAACGCCGAC
ATCGACATGATCGAGTGA
Transcript >Hirsu2|6681
ATGGCCAGCAAGATGGATCGTGGTCTCGACGAGATCATCGCCGACAACCGCAGCAGTGGCCCTCGGAATCGACGC
GGCGGAGGTGATCAGCGTCGTCGCGACCGCCAGGATTATCCCCGCGATGGAGTGAGAAAGTCTGTCCGAACTGAG
CCCAGAAGCATTGACAGCGAATGGGTTCACGATCGCTACGACGACGACCGCAACTCCCGCAGAGGGCCTGTCGCC
CCACGTCGCCACGAATCTCCCGTTCACAACGCGCCCAAAGGATCGAGGCTCCGAGTCGAGAACATCCACTACGAT
CTTGGCGAAGACGACTTAGACGAGCTATTCACGAGAATCGGCCCCACAACTCGACTGCAGCTACTCTATGATCGT
GCAGGGCGGTCCGAGGGCACGGCCTACGTGACTTACGAGTCCAGGGAGGATGCCGAAGAAGCTATCCGGCAGTTC
GACGGCGCAAACGCCAACGGACAGCCAATTCGGCTGACCTTGCTGCCGAACCGCCCGGCCCGGAATCCCTTCGAC
ACGGCCGTCATGCCCAGTCGGCCCCTGGCGGAGCGCATCTCACTTCCCGCTCAGAAGTCGCGCTCCCTGTCTCCT
CGCCGACGGTACGACGAAGACGATGCGGCCCGGAAAGGGATCGACAGGTACATCCCGGACGACGATGGTCGCTCC
CGGAGTCCGATGTCGTCGCGGCGCGGAGGCCGTCGGCCCGGCGCCAGGCGCGAAGGCATGGCTAACGACCAGCAA
AACAGTCGTGGAGGTCGGGCCAACCCGCGGACCAAGAAGACGCAAGAAGAACTGGATGCAGAGATGGAGGATTAC
TTCGGAGGCGGTTCAGGCTCCGCGGCTGGTGCAGCGTCCACCAACGGCAACGGCCCCGCCGCTGCAAACGCCGAC
ATCGACATGATCGAGTGA
Gene >Hirsu2|6681
ATGGCCAGCAAGATGGATCGTGGTCTCGACGAGATCATCGCCGACAACGTTCGCCGCCACCTCTCTCCCTTACCA
GACCCTCGGACTGACCCTTCCTCAGCGCAGCAGTGGCCCTCGGAATCGACGCGGCGGAGGTGATCAGCGTCGTCG
CGACCGCCAGGATTATCCCCGCGATGGAGTGAGAAAGGTCAGTCTTTGTCCCGGATGCCGCCTGGCCACCGATTC
GGGTTGACATCGTCCGGCCCGTGCAGGTTGGACTGTCCTCCTCGCCCTCGTCTACATGGAGTAGTCGTCGACAGT
CAATTTTCTCTGCCGCTGCTTCGTGTGTCGATCGGTTCTCGGCGCGGCCCTGGCGATACGACCAGCGTCTCCGGC
TGCCGATTTCATTGCTAACCTTTACGTGCTTTGCCCGAAACAGTCTGTCCGAACTGAGCCCAGAAGCATTGACAG
GTTCGTTCCCGACACGGCCGACCTCCGCTCCGGCTCGCCGTGCTCTTGCCCGCTAAACCGCCGCAGCGAATGGGT
TCACGATCGCTACGACGACGACCGCAGTCGGTTTCTGCCCCGTCCACCCGTCGCCATGCTCCTCTGCTGACAAGC
CCCAGACTCCCGCAGAGGGCCTGTCGCCCCACGTCGCCACGAATCTCCCGTTCACAAGTGAGTAGGCCCGAGCCG
TGCACCCGAGGCTTGCCTTGCTGAGTCGCGTTCTGCCAGCGCGCCCAAAGGATCGAGGCTCCGAGTCGAGAACAT
CCACTACGATCTTGGCGAAGACGACTTAGACGTATGTACACGCACGCTCTCTTCATCCCCCGGCACCCTCTCTTC
CCGCTGACTCGCGATGCAGGAGCTATTCACGAGAATCGGCCCCACAACTCGACTGCAGCTACTCTATGATCGTGC
AGGGCGGTCCGAGGGCACGGCCTACGTGACTTACGAGTCCAGGGAGGATGCCGAAGAAGCTATCCGGCAGTTCGA
CGGCGCAAACGCCAACGGTACGCGCCCTGTCGCGCCCCCTGTCCGCGATGCACCGTGCGCCCGCTGACCCCAAGC
GCAGGACAGCCAATTCGGCTGACCTTGCTGCCGAACCGCCCGGCCCGGAATCCCTTCGACACGGCCGTCATGCCC
AGTCGGCCCCTGGCGGAGCGCATCTCACTTCCCGCTCAGAAGTCGCGCTCCCTGTCTCCTCGCCGACGGTACGAC
GAAGACGATGCGGCCCGGAAAGGGATCGACAGGTACATCCCGGACGACGATGGTCGCTCCCGGAGTCCGATGTCG
TCGCGGCGCGGAGGCCGTCGGCCCGGCGCCAGGCGCGAAGGCATGGCTAACGACCAGCAAAACAGTCGTGGAGGT
CGGGCCAACCCGCGGACCAAGAAGACGCAAGAAGAACTGGATGCAGAGATGGAGGATTACTTCGGAGGCGGTTCA
GGCTCCGCGGCTGGTGCAGCGTCCACCAACGGCAACGGCCCCGCCGCTGCAAACGCCGACATCGACATGATCGAG
TGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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