Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|6677
Gene name
Location	Contig_35:41515..42046
Strand	+
Gene length (bp)	531
Transcript length (bp)	531
Coding sequence length (bp)	531
Protein length (aa)	177

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03208	PRA1	PRA1 family protein	1.4E-36	33	167

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53633\|PRA1_YEAST	Prenylated Rab acceptor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP3 PE=1 SV=2	16	176	4.0E-45
sp\|Q9UUN5\|PRA1_SCHPO	PRA1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.02c PE=2 SV=1	34	171	6.0E-35
sp\|Q8HY39\|PRAF1_CANLF	Prenylated Rab acceptor protein 1 OS=Canis lupus familiaris GN=RABAC1 PE=2 SV=1	29	174	1.0E-12
sp\|Q9UI14\|PRAF1_HUMAN	Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1 SV=1	29	174	2.0E-12
sp\|Q52NJ0\|PRAF1_PIG	Prenylated Rab acceptor protein 1 OS=Sus scrofa GN=RABAC1 PE=2 SV=1	29	174	6.0E-12

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53633\|PRA1_YEAST	Prenylated Rab acceptor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP3 PE=1 SV=2	16	176	4.0E-45
sp\|Q9UUN5\|PRA1_SCHPO	PRA1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.02c PE=2 SV=1	34	171	6.0E-35
sp\|Q8HY39\|PRAF1_CANLF	Prenylated Rab acceptor protein 1 OS=Canis lupus familiaris GN=RABAC1 PE=2 SV=1	29	174	1.0E-12
sp\|Q9UI14\|PRAF1_HUMAN	Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1 SV=1	29	174	2.0E-12
sp\|Q52NJ0\|PRAF1_PIG	Prenylated Rab acceptor protein 1 OS=Sus scrofa GN=RABAC1 PE=2 SV=1	29	174	6.0E-12
sp\|Q9Z0S9\|PRAF1_MOUSE	Prenylated Rab acceptor protein 1 OS=Mus musculus GN=Rabac1 PE=1 SV=1	29	168	2.0E-11
sp\|O35394\|PRAF1_RAT	Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1 PE=1 SV=1	29	168	2.0E-11
sp\|Q1RMH4\|PRAF1_BOVIN	Prenylated Rab acceptor protein 1 OS=Bos taurus GN=RABAC1 PE=2 SV=1	29	174	3.0E-10

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	85	107	22
2	128	150	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|6677 MSRIQIPLDALTSRFNLQERFQGLRSAPLTGRFSNLRPVSEFLDFKRLSKPANFGEMQSRVNYNLSHFSSNYAVV FSMLSIYALLTNWLLLFDILLVVAGMFLIGRLEGRDLEIGTFRASSSQLYTGLLIVAVPLGLIASPFSTLLWLIG ASGVAILGHASFMDKPIDEAFSGEAV*
Coding	>Hirsu2\|6677 ATGTCGCGCATCCAGATCCCCCTCGACGCCCTGACGTCGCGCTTCAACCTCCAGGAGCGGTTCCAGGGCCTGCGC TCCGCCCCCCTCACCGGCCGCTTCTCCAACCTGCGCCCCGTCTCCGAGTTCCTCGACTTCAAGCGCCTGTCCAAG CCGGCCAACTTTGGCGAGATGCAGTCGCGCGTCAACTACAACCTGAGCCACTTCTCCAGCAACTACGCCGTCGTC TTCAGCATGCTCAGCATCTACGCCCTGCTGACCAACTGGCTGCTGCTCTTCGACATCCTCCTCGTCGTTGCCGGC ATGTTCCTCATCGGCCGCCTCGAGGGCCGTGACCTCGAAATCGGCACCTTCCGTGCCTCGTCGTCGCAGCTCTAC ACCGGCCTCCTCATCGTCGCCGTGCCGCTGGGTCTGATCGCCTCGCCCTTCTCCACCCTGCTCTGGCTCATCGGC GCTTCCGGCGTGGCCATCCTCGGCCACGCCTCCTTCATGGACAAGCCCATCGACGAGGCTTTTTCCGGGGAGGCG GTCTAG
Transcript	>Hirsu2\|6677 ATGTCGCGCATCCAGATCCCCCTCGACGCCCTGACGTCGCGCTTCAACCTCCAGGAGCGGTTCCAGGGCCTGCGC TCCGCCCCCCTCACCGGCCGCTTCTCCAACCTGCGCCCCGTCTCCGAGTTCCTCGACTTCAAGCGCCTGTCCAAG CCGGCCAACTTTGGCGAGATGCAGTCGCGCGTCAACTACAACCTGAGCCACTTCTCCAGCAACTACGCCGTCGTC TTCAGCATGCTCAGCATCTACGCCCTGCTGACCAACTGGCTGCTGCTCTTCGACATCCTCCTCGTCGTTGCCGGC ATGTTCCTCATCGGCCGCCTCGAGGGCCGTGACCTCGAAATCGGCACCTTCCGTGCCTCGTCGTCGCAGCTCTAC ACCGGCCTCCTCATCGTCGCCGTGCCGCTGGGTCTGATCGCCTCGCCCTTCTCCACCCTGCTCTGGCTCATCGGC GCTTCCGGCGTGGCCATCCTCGGCCACGCCTCCTTCATGGACAAGCCCATCGACGAGGCTTTTTCCGGGGAGGCG GTCTAG
Gene	>Hirsu2\|6677 ATGTCGCGCATCCAGATCCCCCTCGACGCCCTGACGTCGCGCTTCAACCTCCAGGAGCGGTTCCAGGGCCTGCGC TCCGCCCCCCTCACCGGCCGCTTCTCCAACCTGCGCCCCGTCTCCGAGTTCCTCGACTTCAAGCGCCTGTCCAAG CCGGCCAACTTTGGCGAGATGCAGTCGCGCGTCAACTACAACCTGAGCCACTTCTCCAGCAACTACGCCGTCGTC TTCAGCATGCTCAGCATCTACGCCCTGCTGACCAACTGGCTGCTGCTCTTCGACATCCTCCTCGTCGTTGCCGGC ATGTTCCTCATCGGCCGCCTCGAGGGCCGTGACCTCGAAATCGGCACCTTCCGTGCCTCGTCGTCGCAGCTCTAC ACCGGCCTCCTCATCGTCGCCGTGCCGCTGGGTCTGATCGCCTCGCCCTTCTCCACCCTGCTCTGGCTCATCGGC GCTTCCGGCGTGGCCATCCTCGGCCACGCCTCCTTCATGGACAAGCCCATCGACGAGGCTTTTTCCGGGGAGGCG GTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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