© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6666 |
| Gene name | |
| Location | Contig_35:7933..8754 |
| Strand | - |
| Gene length (bp) | 821 |
| Transcript length (bp) | 684 |
| Coding sequence length (bp) | 684 |
| Protein length (aa) | 228 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05008 | V-SNARE | Vesicle transport v-SNARE protein N-terminus | 2.9E-21 | 22 | 97 |
| PF12352 | V-SNARE_C | Snare region anchored in the vesicle membrane C-terminus | 1.8E-18 | 135 | 200 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78768|VTI1_SCHPO | Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 | 16 | 227 | 2.0E-45 |
| sp|O89116|VTI1A_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 | 14 | 222 | 2.0E-32 |
| sp|Q9JI51|VTI1A_RAT | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 | 14 | 226 | 1.0E-31 |
| sp|Q96AJ9|VTI1A_HUMAN | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 | 14 | 227 | 2.0E-31 |
| sp|Q9LVP9|VTI13_ARATH | Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 | 11 | 226 | 6.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P78768|VTI1_SCHPO | Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 | 16 | 227 | 2.0E-45 |
| sp|O89116|VTI1A_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 | 14 | 222 | 2.0E-32 |
| sp|Q9JI51|VTI1A_RAT | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 | 14 | 226 | 1.0E-31 |
| sp|Q96AJ9|VTI1A_HUMAN | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 | 14 | 227 | 2.0E-31 |
| sp|Q9LVP9|VTI13_ARATH | Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 | 11 | 226 | 6.0E-29 |
| sp|Q9SEL5|VTI12_ARATH | Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3 | 11 | 226 | 2.0E-26 |
| sp|Q04338|VTI1_YEAST | t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3 | 11 | 227 | 1.0E-22 |
| sp|Q9SEL6|VTI11_ARATH | Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2 | 11 | 204 | 6.0E-22 |
| sp|Q54CK6|VTI1A_DICDI | Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1 | 12 | 205 | 1.0E-18 |
| sp|P58200|VTI1B_RAT | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2 | 28 | 226 | 3.0E-18 |
| sp|O88384|VTI1B_MOUSE | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1 | 28 | 226 | 8.0E-18 |
| sp|Q2KIU0|VTI1B_BOVIN | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1 | 9 | 226 | 3.0E-17 |
| sp|Q9UEU0|VTI1B_HUMAN | Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3 | 28 | 204 | 2.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0008104 | protein localization | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051641 | cellular localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0009987 | cellular process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0033036 | macromolecule localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0005575 | cellular_component | No |
| GO:0015031 | protein transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 201 | 223 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6666 MANPLDTDAGSELFASYEAELKLVQADLSQKLDQIPELSGEPRKNAISQAERALEEADELLGQMRLEKQNIPTSS RAKVNQRFRNYEADVDGNRRKLTALSSDRSALFGSRYRDEPAGASDAHLEQRQQLLSGTDRLDRSTQRLKASQAL ASETESIGADTLANLHGQREMIQHTHDRLLTSEGYVDRSVKTLRGMARRMATNRVITICIITILVLLIIAVIISK FR* |
| Coding | >Hirsu2|6666 ATGGCCAACCCGCTCGACACGGACGCTGGCTCCGAGCTGTTCGCCTCCTACGAGGCTGAGCTCAAGCTTGTCCAA GCCGATCTCTCACAGAAGCTGGACCAGATCCCCGAACTCTCCGGGGAGCCTCGCAAGAACGCCATCAGCCAGGCC GAACGCGCCCTCGAGGAGGCCGACGAGCTGCTTGGACAGATGCGCCTCGAGAAGCAGAACATTCCCACGTCTTCG CGCGCCAAGGTCAACCAGCGCTTTCGCAATTATGAAGCCGATGTCGACGGCAACAGACGCAAGCTTACCGCGCTC TCCTCCGATCGCTCCGCCCTGTTCGGCTCGCGATATCGAGACGAGCCCGCCGGCGCATCGGACGCTCATCTGGAG CAACGGCAGCAGCTGCTCTCCGGCACAGATCGGCTCGACCGGAGCACGCAGCGGCTGAAAGCCAGCCAGGCGCTT GCGAGCGAAACGGAGTCCATCGGCGCAGACACCCTCGCAAATCTGCACGGCCAGCGCGAGATGATACAGCATACG CACGACCGACTTCTGACTAGCGAGGGATACGTGGACAGGAGTGTCAAGACGCTGAGGGGGATGGCGCGGAGAATG GCTACGAACCGGGTCATCACGATTTGCATCATCACTATTCTTGTGCTTCTCATCATTGCCGTCATCATCAGCAAG TTCAGATGA |
| Transcript | >Hirsu2|6666 ATGGCCAACCCGCTCGACACGGACGCTGGCTCCGAGCTGTTCGCCTCCTACGAGGCTGAGCTCAAGCTTGTCCAA GCCGATCTCTCACAGAAGCTGGACCAGATCCCCGAACTCTCCGGGGAGCCTCGCAAGAACGCCATCAGCCAGGCC GAACGCGCCCTCGAGGAGGCCGACGAGCTGCTTGGACAGATGCGCCTCGAGAAGCAGAACATTCCCACGTCTTCG CGCGCCAAGGTCAACCAGCGCTTTCGCAATTATGAAGCCGATGTCGACGGCAACAGACGCAAGCTTACCGCGCTC TCCTCCGATCGCTCCGCCCTGTTCGGCTCGCGATATCGAGACGAGCCCGCCGGCGCATCGGACGCTCATCTGGAG CAACGGCAGCAGCTGCTCTCCGGCACAGATCGGCTCGACCGGAGCACGCAGCGGCTGAAAGCCAGCCAGGCGCTT GCGAGCGAAACGGAGTCCATCGGCGCAGACACCCTCGCAAATCTGCACGGCCAGCGCGAGATGATACAGCATACG CACGACCGACTTCTGACTAGCGAGGGATACGTGGACAGGAGTGTCAAGACGCTGAGGGGGATGGCGCGGAGAATG GCTACGAACCGGGTCATCACGATTTGCATCATCACTATTCTTGTGCTTCTCATCATTGCCGTCATCATCAGCAAG TTCAGATGA |
| Gene | >Hirsu2|6666 ATGGCCAACCCGCTCGACACGGACGCTGGCTCCGAGCTGTTCGCCTCCTACGAGGCTGAGCTCAAGCTTGTCCAA GCCGATCTCTCACAGAAGCTGGACCAGATCCCCGAACTCTCCGGGGAGCCTCGCAAGAACGCCATCAGCCAGGCC GAACGCGCCCTCGAGGAGGCCGACGAGCTGGTACGCCCCTCCCGGCCACGCCGACCCAGCATCCTGGCCCTCACT GACGCGCTCGTCCCCTTAACCCCTCCTGTAGCTTGGACAGATGCGCCTCGAGAAGCAGAACATTCCCACGTCTTC GCGCGCCAAGGTCAACCAGCGCTTTCGCAATTATGAAGCCGATGTCGACGGCAACAGACGCAAGCTTACCGCGCT CTCCTCCGATCGCTCCGCCCTGTTCGGCTCGCGATATCGAGACGAGCCCGCCGGCGCATCGGACGCTCATCTGGA GCAACGGCAGCAGCTGCTCTCCGGCACAGATCGGCTCGACCGGAGCACGCAGCGGCTGAAAGCCAGCCAGGCGCT TGCGAGCGAAACGGAGTCCATCGGCGCAGACACCCTCGCAAATCTGCACGGCCAGCGCGAGATGATACAGCATAC GCACGACCGACTTCTGACTAGCGAGGGATACGTGGACAGGAGTGTCAAGACGCTGAGGGGGATGGCGCGGAGGTA ACGTCGACTCCTCGACACAGCGGTTCCGACGGCGCGACTGACCCTCGCTCCATAACAGAATGGCTACGAACCGGG TCATCACGATTTGCATCATCACTATTCTTGTGCTTCTCATCATTGCCGTCATCATCAGCAAGTTCAGATGA |