© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6639 |
| Gene name | |
| Location | Contig_347:2593..3727 |
| Strand | - |
| Gene length (bp) | 1134 |
| Transcript length (bp) | 1065 |
| Coding sequence length (bp) | 1065 |
| Protein length (aa) | 355 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17050 | AIM5 | Altered inheritance of mitochondria 5 | 1.2E-19 | 33 | 93 |
| PF05742 | TANGO2 | Transport and Golgi organisation 2 | 4.2E-07 | 235 | 329 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0061617 | MICOS complex | Yes |
| GO:0044284 | mitochondrial crista junction | Yes |
| GO:0042407 | cristae formation | Yes |
| GO:0098796 | membrane protein complex | No |
| GO:0007007 | inner mitochondrial membrane organization | No |
| GO:0008150 | biological_process | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0016043 | cellular component organization | No |
| GO:0007005 | mitochondrion organization | No |
| GO:0061024 | membrane organization | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0009987 | cellular process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006996 | organelle organization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0007006 | mitochondrial membrane organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0044232 | organelle membrane contact site | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.101 | 0.0838 | 0.0411 | 0.0434 | 0.9422 | 0.0681 | 0.2793 | 0.2291 | 0.2196 | 0.3728 |
| Orthofinder run ID | 4 |
| Orthogroup | 3476 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6639 MGFVTGFTGGVTLTLSLAYLSVAAHQRNREEQCRALRAQALALQSIVSPVPLPLPPSRSEAAAAQRAASVEVAKD RWNDEVERAARWVQNTDWVGMREGLEARLGALWASAFGDGAQDRANDKLESLAGAARSAAAETGGSISAAAKGAL DRARDKTEQVGATAEAKAQEAKAAGRRAMARAGSEAREKAGETQGVLVSALEKSKDTAQGVVGRVKSAVGMGEGA AAAGLDECLALLKHTIFVPPIGDEPHRQAMRDAMARGRQKSGVRDGEETDGKADGQETDGRDVNGNGSPATAPVF ETGMYGTQRQTVLLVDWHGNVTFIERALWDSNGHVIPRGDGDVVFRFHIDEWDD* |
| Coding | >Hirsu2|6639 ATGGGCTTCGTCACGGGTTTTACGGGCGGCGTGACCCTGACCCTCTCGCTCGCCTACCTCTCGGTCGCGGCCCAC CAGCGGAATCGCGAGGAGCAGTGCCGCGCGCTTCGCGCGCAGGCGCTGGCCCTGCAGAGCATCGTCAGCCCCGTG CCCCTGCCGCTGCCGCCGTCCCGGTCCGAGGCGGCGGCCGCGCAGCGGGCAGCATCGGTCGAGGTCGCCAAGGAC CGGTGGAACGACGAGGTGGAACGGGCGGCGCGGTGGGTGCAGAACACGGACTGGGTCGGGATGCGCGAGGGCCTG GAGGCCCGCCTCGGCGCCCTGTGGGCGAGCGCGTTCGGCGACGGCGCGCAGGACAGGGCCAACGACAAGCTCGAG TCGCTGGCCGGGGCGGCCAGGTCTGCGGCGGCCGAGACGGGCGGCAGCATCTCCGCGGCCGCCAAGGGCGCCCTG GACCGGGCCAGGGACAAGACCGAGCAGGTTGGGGCCACGGCCGAGGCCAAGGCGCAGGAGGCCAAGGCGGCCGGC CGGAGAGCGATGGCACGAGCGGGGAGCGAGGCGCGCGAGAAGGCGGGCGAGACCCAGGGCGTCCTCGTCTCGGCG CTCGAGAAGAGCAAGGACACGGCCCAAGGAGTGGTGGGCAGAGTCAAGTCGGCCGTGGGCATGGGCGAGGGCGCC GCCGCCGCCGGCCTCGACGAGTGCCTGGCCCTGCTCAAGCACACCATCTTCGTGCCGCCCATCGGCGACGAGCCG CACCGCCAGGCCATGCGCGACGCCATGGCCAGGGGCCGACAGAAGAGCGGCGTGCGGGACGGCGAGGAGACGGAC GGCAAGGCCGACGGCCAGGAGACGGACGGCCGCGACGTCAACGGCAACGGCTCGCCCGCCACGGCACCCGTCTTC GAGACGGGCATGTACGGCACCCAGAGGCAGACGGTGCTGCTGGTCGACTGGCACGGAAACGTCACCTTCATCGAG CGAGCCCTCTGGGACAGCAACGGGCACGTGATCCCCCGCGGCGACGGCGACGTCGTCTTCCGCTTCCACATCGAC GAATGGGACGACTGA |
| Transcript | >Hirsu2|6639 ATGGGCTTCGTCACGGGTTTTACGGGCGGCGTGACCCTGACCCTCTCGCTCGCCTACCTCTCGGTCGCGGCCCAC CAGCGGAATCGCGAGGAGCAGTGCCGCGCGCTTCGCGCGCAGGCGCTGGCCCTGCAGAGCATCGTCAGCCCCGTG CCCCTGCCGCTGCCGCCGTCCCGGTCCGAGGCGGCGGCCGCGCAGCGGGCAGCATCGGTCGAGGTCGCCAAGGAC CGGTGGAACGACGAGGTGGAACGGGCGGCGCGGTGGGTGCAGAACACGGACTGGGTCGGGATGCGCGAGGGCCTG GAGGCCCGCCTCGGCGCCCTGTGGGCGAGCGCGTTCGGCGACGGCGCGCAGGACAGGGCCAACGACAAGCTCGAG TCGCTGGCCGGGGCGGCCAGGTCTGCGGCGGCCGAGACGGGCGGCAGCATCTCCGCGGCCGCCAAGGGCGCCCTG GACCGGGCCAGGGACAAGACCGAGCAGGTTGGGGCCACGGCCGAGGCCAAGGCGCAGGAGGCCAAGGCGGCCGGC CGGAGAGCGATGGCACGAGCGGGGAGCGAGGCGCGCGAGAAGGCGGGCGAGACCCAGGGCGTCCTCGTCTCGGCG CTCGAGAAGAGCAAGGACACGGCCCAAGGAGTGGTGGGCAGAGTCAAGTCGGCCGTGGGCATGGGCGAGGGCGCC GCCGCCGCCGGCCTCGACGAGTGCCTGGCCCTGCTCAAGCACACCATCTTCGTGCCGCCCATCGGCGACGAGCCG CACCGCCAGGCCATGCGCGACGCCATGGCCAGGGGCCGACAGAAGAGCGGCGTGCGGGACGGCGAGGAGACGGAC GGCAAGGCCGACGGCCAGGAGACGGACGGCCGCGACGTCAACGGCAACGGCTCGCCCGCCACGGCACCCGTCTTC GAGACGGGCATGTACGGCACCCAGAGGCAGACGGTGCTGCTGGTCGACTGGCACGGAAACGTCACCTTCATCGAG CGAGCCCTCTGGGACAGCAACGGGCACGTGATCCCCCGCGGCGACGGCGACGTCGTCTTCCGCTTCCACATCGAC GAATGGGACGACTGA |
| Gene | >Hirsu2|6639 ATGGGCTTCGTCACGGGTTTTGTACGCTCCGCAGTTCAACTGCGTCTCTCTTGGCTCCGGCGGCGGCACTGCTGA CACCAGCCCTCGCAGACGGGCGGCGTGACCCTGACCCTCTCGCTCGCCTACCTCTCGGTCGCGGCCCACCAGCGG AATCGCGAGGAGCAGTGCCGCGCGCTTCGCGCGCAGGCGCTGGCCCTGCAGAGCATCGTCAGCCCCGTGCCCCTG CCGCTGCCGCCGTCCCGGTCCGAGGCGGCGGCCGCGCAGCGGGCAGCATCGGTCGAGGTCGCCAAGGACCGGTGG AACGACGAGGTGGAACGGGCGGCGCGGTGGGTGCAGAACACGGACTGGGTCGGGATGCGCGAGGGCCTGGAGGCC CGCCTCGGCGCCCTGTGGGCGAGCGCGTTCGGCGACGGCGCGCAGGACAGGGCCAACGACAAGCTCGAGTCGCTG GCCGGGGCGGCCAGGTCTGCGGCGGCCGAGACGGGCGGCAGCATCTCCGCGGCCGCCAAGGGCGCCCTGGACCGG GCCAGGGACAAGACCGAGCAGGTTGGGGCCACGGCCGAGGCCAAGGCGCAGGAGGCCAAGGCGGCCGGCCGGAGA GCGATGGCACGAGCGGGGAGCGAGGCGCGCGAGAAGGCGGGCGAGACCCAGGGCGTCCTCGTCTCGGCGCTCGAG AAGAGCAAGGACACGGCCCAAGGAGTGGTGGGCAGAGTCAAGTCGGCCGTGGGCATGGGCGAGGGCGCCGCCGCC GCCGGCCTCGACGAGTGCCTGGCCCTGCTCAAGCACACCATCTTCGTGCCGCCCATCGGCGACGAGCCGCACCGC CAGGCCATGCGCGACGCCATGGCCAGGGGCCGACAGAAGAGCGGCGTGCGGGACGGCGAGGAGACGGACGGCAAG GCCGACGGCCAGGAGACGGACGGCCGCGACGTCAACGGCAACGGCTCGCCCGCCACGGCACCCGTCTTCGAGACG GGCATGTACGGCACCCAGAGGCAGACGGTGCTGCTGGTCGACTGGCACGGAAACGTCACCTTCATCGAGCGAGCC CTCTGGGACAGCAACGGGCACGTGATCCCCCGCGGCGACGGCGACGTCGTCTTCCGCTTCCACATCGACGAATGG GACGACTGA |