© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6637 |
| Gene name | |
| Location | Contig_346:20270..21665 |
| Strand | - |
| Gene length (bp) | 1395 |
| Transcript length (bp) | 1251 |
| Coding sequence length (bp) | 1251 |
| Protein length (aa) | 417 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.4179 | 0.213 | 0.6935 | 0.1439 | 0.2513 | 0.4467 | 0.1685 | 0.3303 | 0.2066 | 0.0398 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.963209 |
| Orthofinder run ID | 4 |
| Orthogroup | 28 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6637 MKRNLVFSLAAWPLAGAVPPAPTTTSPPPTGIDRFLPLLEDNAPGQFVYVGVPMRGTTAPAHFRARGGIVFGDGP HADAAYAQVSLPEDSVWVWVERDLEAAAGRSSWRAADGHIFLRNDPAVLRWVFRASAVPTMVTRNGAVRHLHALG GIPWTAVQAWCLTTGDPDRRAYEWQLNDDWDARWSRFGPGGELPPLNHVVPPRGLSSRQLARDFVNALLSDRNGL YSADRRRDLRQLYDWNPDLEPDRDFPLIRRRQAESLVSLTLRHFPWFNISGMAPHVQHMLAGGLPTAWQCLEGIW AVRSWTSGRPQRRRERGGVEEEEACHRLAAQLPRPPLDEDETPAPPVPHIDCRGAINQKLELYAATDPSDTSRRQ SIEEELRRDLDSVCAADPGESRGDRSGVEATDQELRPQIAG* |
| Coding | >Hirsu2|6637 ATGAAGCGCAACCTGGTCTTCTCGCTCGCGGCCTGGCCGCTCGCCGGCGCCGTGCCCCCGGCGCCGACGACGACC TCGCCCCCGCCGACCGGCATCGACCGTTTCCTGCCGCTGCTCGAGGACAACGCGCCGGGCCAGTTCGTGTACGTG GGCGTGCCGATGCGCGGCACGACGGCGCCCGCCCACTTCCGGGCCCGCGGCGGCATCGTCTTCGGCGACGGCCCG CACGCCGACGCCGCCTACGCCCAGGTCAGCCTGCCCGAGGACTCGGTCTGGGTCTGGGTCGAGCGCGACCTCGAG GCGGCCGCCGGCCGGAGCTCGTGGCGGGCGGCCGACGGGCACATCTTCCTGCGCAACGACCCGGCCGTCCTGCGC TGGGTCTTCCGCGCGTCGGCCGTGCCGACCATGGTGACGCGCAACGGCGCCGTCCGGCACCTGCACGCCCTCGGC GGCATCCCCTGGACGGCCGTGCAGGCGTGGTGCCTGACGACGGGCGACCCGGACCGCCGCGCGTACGAGTGGCAG CTCAACGACGACTGGGACGCCCGCTGGTCGCGCTTCGGCCCCGGCGGCGAGCTGCCGCCGCTCAACCACGTCGTG CCCCCGCGCGGCCTGTCGAGCCGGCAGCTGGCCCGCGACTTCGTCAACGCCCTGCTGAGCGACCGCAACGGCCTC TACTCGGCCGACCGGCGCCGCGACCTGCGCCAGCTGTACGACTGGAACCCGGACCTGGAGCCCGACCGCGACTTT CCGCTCATCCGCCGGCGACAAGCCGAATCTCTGGTCAGCCTGACGCTGCGGCACTTCCCCTGGTTCAACATCAGC GGCATGGCGCCCCACGTCCAGCACATGCTCGCCGGCGGCCTCCCCACGGCCTGGCAGTGTCTTGAGGGCATCTGG GCCGTGCGCAGCTGGACGTCCGGTCGGCCGCAGAGGAGAAGGGAGAGGGGGGGCGTCGAAGAGGAAGAGGCGTGC CATCGGCTGGCCGCCCAGCTGCCGCGGCCGCCGCTCGACGAGGACGAGACCCCGGCCCCCCCCGTGCCGCACATC GACTGCCGCGGCGCCATCAACCAGAAGCTCGAATTATACGCGGCCACGGACCCGTCCGACACGTCGAGGCGCCAG TCGATCGAGGAGGAGCTGCGACGCGACCTCGACAGCGTCTGCGCCGCGGACCCGGGTGAGTCGAGAGGAGACCGA TCAGGAGTTGAGGCCACAGATCAGGAGTTGAGGCCACAGATCGCGGGCTGA |
| Transcript | >Hirsu2|6637 ATGAAGCGCAACCTGGTCTTCTCGCTCGCGGCCTGGCCGCTCGCCGGCGCCGTGCCCCCGGCGCCGACGACGACC TCGCCCCCGCCGACCGGCATCGACCGTTTCCTGCCGCTGCTCGAGGACAACGCGCCGGGCCAGTTCGTGTACGTG GGCGTGCCGATGCGCGGCACGACGGCGCCCGCCCACTTCCGGGCCCGCGGCGGCATCGTCTTCGGCGACGGCCCG CACGCCGACGCCGCCTACGCCCAGGTCAGCCTGCCCGAGGACTCGGTCTGGGTCTGGGTCGAGCGCGACCTCGAG GCGGCCGCCGGCCGGAGCTCGTGGCGGGCGGCCGACGGGCACATCTTCCTGCGCAACGACCCGGCCGTCCTGCGC TGGGTCTTCCGCGCGTCGGCCGTGCCGACCATGGTGACGCGCAACGGCGCCGTCCGGCACCTGCACGCCCTCGGC GGCATCCCCTGGACGGCCGTGCAGGCGTGGTGCCTGACGACGGGCGACCCGGACCGCCGCGCGTACGAGTGGCAG CTCAACGACGACTGGGACGCCCGCTGGTCGCGCTTCGGCCCCGGCGGCGAGCTGCCGCCGCTCAACCACGTCGTG CCCCCGCGCGGCCTGTCGAGCCGGCAGCTGGCCCGCGACTTCGTCAACGCCCTGCTGAGCGACCGCAACGGCCTC TACTCGGCCGACCGGCGCCGCGACCTGCGCCAGCTGTACGACTGGAACCCGGACCTGGAGCCCGACCGCGACTTT CCGCTCATCCGCCGGCGACAAGCCGAATCTCTGGTCAGCCTGACGCTGCGGCACTTCCCCTGGTTCAACATCAGC GGCATGGCGCCCCACGTCCAGCACATGCTCGCCGGCGGCCTCCCCACGGCCTGGCAGTGTCTTGAGGGCATCTGG GCCGTGCGCAGCTGGACGTCCGGTCGGCCGCAGAGGAGAAGGGAGAGGGGGGGCGTCGAAGAGGAAGAGGCGTGC CATCGGCTGGCCGCCCAGCTGCCGCGGCCGCCGCTCGACGAGGACGAGACCCCGGCCCCCCCCGTGCCGCACATC GACTGCCGCGGCGCCATCAACCAGAAGCTCGAATTATACGCGGCCACGGACCCGTCCGACACGTCGAGGCGCCAG TCGATCGAGGAGGAGCTGCGACGCGACCTCGACAGCGTCTGCGCCGCGGACCCGGGTGAGTCGAGAGGAGACCGA TCAGGAGTTGAGGCCACAGATCAGGAGTTGAGGCCACAGATCGCGGGCTGA |
| Gene | >Hirsu2|6637 ATGAAGCGCAACCTGGTCTTCTCGCTCGCGGCCTGGCCGCTCGCCGGCGCCGTGCCCCCGGCGCCGACGACGACC TCGCCCCCGCCGACCGGCATCGACCGTTTCCTGCCGCTGCTCGAGGACAACGCGCCGGGCCAGTTCGTGTACGTG GGCGTGCCGATGCGCGGCACGACGGCGCCCGCCCACTTCCGGGCCCGCGGCGGCATCGTCTTCGGCGACGGCCCG CACGCCGACGCCGCCTACGCCCAGGTCAGCCTGCCCGAGGACTCGGTCTGGGTCTGGGTCGAGCGCGACCTCGAG GCGGCCGCCGGCCGGAGCTCGTGGCGGGCGGCCGACGGGCACATCTTCCTGCGCAACGACCCGGCCGTCCTGCGC TGGGTCTTCCGCGCGTCGGCCGTGCCGACCATGGTGACGCGCAACGGCGCCGTCCGGCACCTGCACGCCCTCGGC GGCATCCCCTGGACGGCCGTGCAGGCGTGGTGCCTGACGACGGGCGACCCGGACCGCCGCGCGTACGAGTGGCAG CTCAACGACGACTGGGACGCCCGCTGGTCGCGCTTCGGCCCCGGCGGCGAGCTGCCGCCGCTCAACCACGTCGTG CCCCCGCGCGGCCTGTCGAGCCGGCAGCTGGCCCGCGACTTCGTCAACGCCCTGCTGAGCGACCGCAACGGCCTC TACTCGGCCGACCGGCGCCGCGACCTGCGCCAGCTGTACGACTGGAACCCGGACCTGGAGCCCGACCGCGACTTT CCGCTCATCCGCCGGCGACAAGGCAAGCACGGCACCGAAACCCGTGTCCGGGAAGGGCCCCCGTCGTGGAATGCT CACTGACCCTCTCGCAGCCGAATCTCTGGTCAGCCTGACGCTGCGGCACTTCCCCTGGTTCAACATCAGCGGCAT GGCGCCCCACGTCCAGCACATGCTCGCCGGCGGCCTCCCCACGGCCTGGCAGTGTCTTGAGGGCATCTGGGCCGT GCGCAGCTGGACGTCCGGTCGGCCGCAGAGGAGAAGGGAGAGGGGGGGCGTCGAAGAGGAAGAGGCGTGCCATCG GCTGGCCGCCCAGCTGCCGCGGCCGCCGCTCGACGAGGACGAGAGTCAGTCTCCTGATGAAAATGATGATGCCTT TGAGAGTGTGGTCGATATCTGACGACTGACTCTGCTTTCGCAGCCCCGGCCCCCCCCGTGCCGCACATCGACTGC CGCGGCGCCATCAACCAGAAGCTCGAATTATACGCGGCCACGGACCCGTCCGACACGTCGAGGCGCCAGTCGATC GAGGAGGAGCTGCGACGCGACCTCGACAGCGTCTGCGCCGCGGACCCGGGTGAGTCGAGAGGAGACCGATCAGGA GTTGAGGCCACAGATCAGGAGTTGAGGCCACAGATCGCGGGCTGA |