© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|6630 |
| Gene name | |
| Location | Contig_346:2757..5442 |
| Strand | + |
| Gene length (bp) | 2685 |
| Transcript length (bp) | 2568 |
| Coding sequence length (bp) | 2568 |
| Protein length (aa) | 856 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17681 | GCP_N_terminal | Gamma tubulin complex component N-terminal | 2.2E-39 | 245 | 550 |
| PF04130 | GCP_C_terminal | Gamma tubulin complex component C-terminal | 1.2E-31 | 555 | 830 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BKN5|GCP5_MOUSE | Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2 SV=2 | 534 | 832 | 1.0E-21 |
| sp|Q95K09|GCP5_MACFA | Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2 | 534 | 832 | 3.0E-21 |
| sp|Q96RT8|GCP5_HUMAN | Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1 SV=1 | 534 | 832 | 3.0E-21 |
| sp|Q5R5J6|GCP2_PONAB | Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 | 412 | 765 | 5.0E-12 |
| sp|Q9BSJ2|GCP2_HUMAN | Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 | 412 | 765 | 1.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BKN5|GCP5_MOUSE | Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2 SV=2 | 534 | 832 | 1.0E-21 |
| sp|Q95K09|GCP5_MACFA | Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2 | 534 | 832 | 3.0E-21 |
| sp|Q96RT8|GCP5_HUMAN | Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1 SV=1 | 534 | 832 | 3.0E-21 |
| sp|Q5R5J6|GCP2_PONAB | Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 | 412 | 765 | 5.0E-12 |
| sp|Q9BSJ2|GCP2_HUMAN | Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 | 412 | 765 | 1.0E-11 |
| sp|Q9FG37|GACP3_ARATH | Gamma-tubulin complex component 3 OS=Arabidopsis thaliana GN=GCP3 PE=1 SV=1 | 646 | 791 | 6.0E-08 |
| sp|Q96CW5|GCP3_HUMAN | Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 | 392 | 788 | 6.0E-08 |
| sp|P58854|GCP3_MOUSE | Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=1 SV=2 | 392 | 788 | 9.0E-08 |
| sp|O73787|GCP3_XENLA | Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 | 225 | 788 | 1.0E-07 |
| sp|Q95ZG3|SPC97_DICDI | Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 | 638 | 834 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043015 | gamma-tubulin binding | Yes |
| GO:0008092 | cytoskeletal protein binding | No |
| GO:0005515 | protein binding | No |
| GO:0005488 | binding | No |
| GO:0015631 | tubulin binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6630 MAFAARIGPLTEELVQSLTPSSAQAAGKLRSRCDACLRKLRSHPYLRTNPFEVDDRLDGLDERFRVNGRDGLADA LRERRAALPRAAAAPASCLPDILFLLLELSDQPTFKTRLRDLEPPAPPAEAATARAHPPLRWEQVAAEDGWDGDG DLWKSISYSSDDDDSDDSDRDRDSAVDSSDATSLSAQGDAAAVRLAEESIVHPEDDEALGAVLRAQQWRAQLPPP HAARPDGSEPRVTVSEVQLVREALFMLHGLEGTLFDAAAPPFRLAHVADETLRALTGALAEPARHLRLLRSFVAR PQTVAHLQTLQDCIARHLRDLDRGLADVQARLASPRGEVVVSLTLVMGELAPRLEPLLALSHIVARVQEAAESDT FRYLELLFDETGVAQLAGKPGIYEFLARIFVDCFNVYLRPIRHWMHEGRLLPADELFFITEPSSGHVPLGDTWHS RFCLRRAADGGLHAPSFLQPAAGKIYNAGKNIVVLKLLGSHDAAAVLSPQLHDDPPLDYYALCPPGFELAPFADL FAAAFDRWVRSQYQRTSVTLKNALLRDWGLSASLDALRALYLMSDGHAAAAFCEALFAKLDATDAAWHGRHGLTA AGREAFASRLDPNRLSVDFDAAASRLTASECRCSVKKALPAVRVGYRVPWPVQMIVSAESVSRYQAVFTLLLQIK RASHALQKLKILDYYWTDHENWGERSLVYSARSKLLWFCSTIHAYLATLVLEPVESRMRRELEAAEDIDAMVAVH SGAMKQMIDQACLGSSLQPIREAILDMLDLAIKLGHSQSHAPSEPAHGQSSSSLATLKEIATDFDRHLRFVAEGL RSVARASSSSASAKWEILADMLQSDVGGGR* |
| Coding | >Hirsu2|6630 ATGGCGTTTGCGGCGCGCATCGGACCTCTGACTGAGGAGCTGGTCCAAAGCCTGACCCCGTCGTCGGCCCAGGCG GCCGGAAAGCTCCGGTCGAGATGCGACGCCTGCTTGCGGAAGCTCAGGTCTCACCCCTACCTGCGCACTAATCCG TTCGAGGTCGACGACCGGCTCGACGGCCTGGACGAGCGCTTCCGCGTCAACGGCCGCGACGGCCTGGCCGACGCG CTGCGCGAGAGACGCGCCGCCCTGCCCCGCGCCGCCGCCGCCCCTGCGTCCTGCCTCCCCGACATCCTCTTTCTG CTCCTCGAGCTGTCCGACCAGCCGACCTTCAAGACACGGCTGCGCGACCTCGAGCCGCCCGCGCCGCCGGCCGAG GCCGCCACCGCCCGCGCGCACCCGCCGCTCCGCTGGGAGCAGGTGGCTGCCGAGGACGGCTGGGACGGCGACGGG GACCTGTGGAAGTCCATCAGCTACAGCAGCGACGACGACGACTCCGACGACAGCGACCGCGACCGCGACTCGGCC GTCGACTCGTCCGACGCCACCTCGCTCTCCGCCCAGGGGGATGCCGCCGCCGTCAGGCTGGCCGAGGAGTCCATC GTTCACCCCGAAGACGACGAGGCGCTGGGAGCGGTCCTGAGGGCACAGCAGTGGCGCGCGCAGCTCCCGCCGCCG CACGCCGCGCGGCCCGATGGCTCCGAGCCCAGAGTCACCGTCTCCGAGGTGCAGCTCGTCCGCGAGGCCCTCTTC ATGCTGCACGGCCTCGAGGGCACCCTCTTCGACGCCGCCGCGCCGCCCTTCCGGCTGGCGCACGTGGCGGACGAG ACGCTCCGGGCGCTGACGGGCGCCTTGGCGGAGCCCGCCCGCCATCTGCGCCTGCTGCGCAGCTTCGTGGCCCGC CCGCAGACTGTGGCTCACCTCCAGACGCTGCAGGACTGCATCGCCCGCCATCTGCGCGACCTGGACCGCGGGCTC GCCGACGTCCAGGCTCGCCTCGCCTCGCCGCGGGGAGAGGTCGTCGTCAGCCTGACGCTCGTGATGGGAGAGCTC GCGCCCCGGCTCGAGCCCCTCCTCGCCCTGTCGCACATCGTGGCCAGGGTCCAGGAGGCGGCCGAGTCGGACACC TTCCGCTACCTGGAGCTCCTCTTCGACGAGACGGGCGTGGCACAGCTGGCGGGCAAGCCCGGCATCTACGAGTTC CTCGCCCGCATCTTCGTCGACTGTTTCAACGTCTACCTACGCCCCATCCGTCACTGGATGCACGAGGGCAGGCTG CTTCCAGCCGACGAGCTCTTCTTCATCACTGAACCATCCTCCGGCCACGTCCCGCTGGGCGACACCTGGCACAGC CGCTTCTGCCTGCGTCGGGCGGCGGACGGGGGCCTCCATGCGCCGAGCTTCCTGCAGCCGGCCGCGGGCAAGATC TACAACGCCGGTAAGAACATCGTGGTGCTCAAGCTGTTGGGCAGCCATGATGCGGCGGCCGTCTTGTCCCCGCAG CTCCACGACGACCCGCCTCTCGACTACTATGCGCTTTGCCCCCCCGGCTTCGAGCTTGCCCCGTTCGCAGACCTG TTCGCCGCCGCCTTTGATCGCTGGGTCCGGAGCCAGTATCAGAGGACCTCGGTGACGCTGAAGAACGCGCTCCTG CGAGACTGGGGCCTGTCTGCCTCGCTCGACGCTCTGCGCGCCCTGTACCTCATGTCGGACGGACACGCGGCCGCT GCCTTCTGCGAGGCCCTCTTCGCCAAGCTGGACGCAACGGATGCCGCCTGGCACGGTCGACATGGCCTCACCGCG GCGGGCCGCGAGGCTTTCGCGTCGCGCCTCGACCCCAACCGACTGTCCGTCGATTTCGACGCTGCGGCGTCTCGC CTGACCGCATCCGAGTGTCGGTGTTCCGTCAAAAAGGCCCTTCCGGCTGTCCGAGTCGGCTACAGGGTGCCGTGG CCGGTGCAGATGATTGTGTCGGCCGAGAGCGTGTCGCGCTATCAGGCCGTGTTCACGTTGCTCTTGCAAATCAAG AGGGCATCGCACGCCCTCCAAAAGCTCAAAATCCTCGATTACTACTGGACAGACCATGAAAACTGGGGCGAGCGT AGCCTGGTCTATTCCGCGAGGAGTAAACTCCTTTGGTTCTGCTCCACCATCCATGCATATCTCGCGACCCTGGTC CTGGAACCGGTCGAGTCCCGCATGAGGCGCGAATTGGAAGCTGCCGAGGATATCGACGCCATGGTCGCCGTCCAC TCCGGGGCCATGAAGCAGATGATCGATCAGGCGTGCCTCGGAAGCAGCCTCCAGCCCATCCGAGAAGCGATCCTC GACATGTTGGATCTGGCAATCAAGCTCGGACACAGTCAGAGCCACGCGCCTAGCGAACCCGCACACGGGCAGTCG TCGTCGTCCTTGGCGACTCTGAAGGAGATAGCTACCGATTTTGATCGCCATCTGCGCTTCGTCGCCGAGGGATTG CGGAGCGTCGCGAGGGCGAGCAGCAGTTCTGCATCAGCCAAGTGGGAGATTCTGGCCGACATGCTTCAGTCCGAC GTCGGGGGCGGGCGATGA |
| Transcript | >Hirsu2|6630 ATGGCGTTTGCGGCGCGCATCGGACCTCTGACTGAGGAGCTGGTCCAAAGCCTGACCCCGTCGTCGGCCCAGGCG GCCGGAAAGCTCCGGTCGAGATGCGACGCCTGCTTGCGGAAGCTCAGGTCTCACCCCTACCTGCGCACTAATCCG TTCGAGGTCGACGACCGGCTCGACGGCCTGGACGAGCGCTTCCGCGTCAACGGCCGCGACGGCCTGGCCGACGCG CTGCGCGAGAGACGCGCCGCCCTGCCCCGCGCCGCCGCCGCCCCTGCGTCCTGCCTCCCCGACATCCTCTTTCTG CTCCTCGAGCTGTCCGACCAGCCGACCTTCAAGACACGGCTGCGCGACCTCGAGCCGCCCGCGCCGCCGGCCGAG GCCGCCACCGCCCGCGCGCACCCGCCGCTCCGCTGGGAGCAGGTGGCTGCCGAGGACGGCTGGGACGGCGACGGG GACCTGTGGAAGTCCATCAGCTACAGCAGCGACGACGACGACTCCGACGACAGCGACCGCGACCGCGACTCGGCC GTCGACTCGTCCGACGCCACCTCGCTCTCCGCCCAGGGGGATGCCGCCGCCGTCAGGCTGGCCGAGGAGTCCATC GTTCACCCCGAAGACGACGAGGCGCTGGGAGCGGTCCTGAGGGCACAGCAGTGGCGCGCGCAGCTCCCGCCGCCG CACGCCGCGCGGCCCGATGGCTCCGAGCCCAGAGTCACCGTCTCCGAGGTGCAGCTCGTCCGCGAGGCCCTCTTC ATGCTGCACGGCCTCGAGGGCACCCTCTTCGACGCCGCCGCGCCGCCCTTCCGGCTGGCGCACGTGGCGGACGAG ACGCTCCGGGCGCTGACGGGCGCCTTGGCGGAGCCCGCCCGCCATCTGCGCCTGCTGCGCAGCTTCGTGGCCCGC CCGCAGACTGTGGCTCACCTCCAGACGCTGCAGGACTGCATCGCCCGCCATCTGCGCGACCTGGACCGCGGGCTC GCCGACGTCCAGGCTCGCCTCGCCTCGCCGCGGGGAGAGGTCGTCGTCAGCCTGACGCTCGTGATGGGAGAGCTC GCGCCCCGGCTCGAGCCCCTCCTCGCCCTGTCGCACATCGTGGCCAGGGTCCAGGAGGCGGCCGAGTCGGACACC TTCCGCTACCTGGAGCTCCTCTTCGACGAGACGGGCGTGGCACAGCTGGCGGGCAAGCCCGGCATCTACGAGTTC CTCGCCCGCATCTTCGTCGACTGTTTCAACGTCTACCTACGCCCCATCCGTCACTGGATGCACGAGGGCAGGCTG CTTCCAGCCGACGAGCTCTTCTTCATCACTGAACCATCCTCCGGCCACGTCCCGCTGGGCGACACCTGGCACAGC CGCTTCTGCCTGCGTCGGGCGGCGGACGGGGGCCTCCATGCGCCGAGCTTCCTGCAGCCGGCCGCGGGCAAGATC TACAACGCCGGTAAGAACATCGTGGTGCTCAAGCTGTTGGGCAGCCATGATGCGGCGGCCGTCTTGTCCCCGCAG CTCCACGACGACCCGCCTCTCGACTACTATGCGCTTTGCCCCCCCGGCTTCGAGCTTGCCCCGTTCGCAGACCTG TTCGCCGCCGCCTTTGATCGCTGGGTCCGGAGCCAGTATCAGAGGACCTCGGTGACGCTGAAGAACGCGCTCCTG CGAGACTGGGGCCTGTCTGCCTCGCTCGACGCTCTGCGCGCCCTGTACCTCATGTCGGACGGACACGCGGCCGCT GCCTTCTGCGAGGCCCTCTTCGCCAAGCTGGACGCAACGGATGCCGCCTGGCACGGTCGACATGGCCTCACCGCG GCGGGCCGCGAGGCTTTCGCGTCGCGCCTCGACCCCAACCGACTGTCCGTCGATTTCGACGCTGCGGCGTCTCGC CTGACCGCATCCGAGTGTCGGTGTTCCGTCAAAAAGGCCCTTCCGGCTGTCCGAGTCGGCTACAGGGTGCCGTGG CCGGTGCAGATGATTGTGTCGGCCGAGAGCGTGTCGCGCTATCAGGCCGTGTTCACGTTGCTCTTGCAAATCAAG AGGGCATCGCACGCCCTCCAAAAGCTCAAAATCCTCGATTACTACTGGACAGACCATGAAAACTGGGGCGAGCGT AGCCTGGTCTATTCCGCGAGGAGTAAACTCCTTTGGTTCTGCTCCACCATCCATGCATATCTCGCGACCCTGGTC CTGGAACCGGTCGAGTCCCGCATGAGGCGCGAATTGGAAGCTGCCGAGGATATCGACGCCATGGTCGCCGTCCAC TCCGGGGCCATGAAGCAGATGATCGATCAGGCGTGCCTCGGAAGCAGCCTCCAGCCCATCCGAGAAGCGATCCTC GACATGTTGGATCTGGCAATCAAGCTCGGACACAGTCAGAGCCACGCGCCTAGCGAACCCGCACACGGGCAGTCG TCGTCGTCCTTGGCGACTCTGAAGGAGATAGCTACCGATTTTGATCGCCATCTGCGCTTCGTCGCCGAGGGATTG CGGAGCGTCGCGAGGGCGAGCAGCAGTTCTGCATCAGCCAAGTGGGAGATTCTGGCCGACATGCTTCAGTCCGAC GTCGGGGGCGGGCGATGA |
| Gene | >Hirsu2|6630 ATGGCGTTTGCGGCGCGCATCGGACCTCTGACTGAGGAGCTGGTCCAAAGCCTGACCCCGTCGTCGGCCCAGGTA AGGATTGGGAGGGGGAGAGGCTCCGCGTCTCCGCCGTCGTGTCAGCGCGACCCCATGTCGAGAGAGGGGGGGAGA AGGAGAAAAGATGACAACAACTGACCGCAGCTCTCGCAGGCGGCCGGAAAGCTCCGGTCGAGATGCGACGCCTGC TTGCGGAAGCTCAGGTCTCACCCCTACCTGCGCACTAATCCGTTCGAGGTCGACGACCGGCTCGACGGCCTGGAC GAGCGCTTCCGCGTCAACGGCCGCGACGGCCTGGCCGACGCGCTGCGCGAGAGACGCGCCGCCCTGCCCCGCGCC GCCGCCGCCCCTGCGTCCTGCCTCCCCGACATCCTCTTTCTGCTCCTCGAGCTGTCCGACCAGCCGACCTTCAAG ACACGGCTGCGCGACCTCGAGCCGCCCGCGCCGCCGGCCGAGGCCGCCACCGCCCGCGCGCACCCGCCGCTCCGC TGGGAGCAGGTGGCTGCCGAGGACGGCTGGGACGGCGACGGGGACCTGTGGAAGTCCATCAGCTACAGCAGCGAC GACGACGACTCCGACGACAGCGACCGCGACCGCGACTCGGCCGTCGACTCGTCCGACGCCACCTCGCTCTCCGCC CAGGGGGATGCCGCCGCCGTCAGGCTGGCCGAGGAGTCCATCGTTCACCCCGAAGACGACGAGGCGCTGGGAGCG GTCCTGAGGGCACAGCAGTGGCGCGCGCAGCTCCCGCCGCCGCACGCCGCGCGGCCCGATGGCTCCGAGCCCAGA GTCACCGTCTCCGAGGTGCAGCTCGTCCGCGAGGCCCTCTTCATGCTGCACGGCCTCGAGGGCACCCTCTTCGAC GCCGCCGCGCCGCCCTTCCGGCTGGCGCACGTGGCGGACGAGACGCTCCGGGCGCTGACGGGCGCCTTGGCGGAG CCCGCCCGCCATCTGCGCCTGCTGCGCAGCTTCGTGGCCCGCCCGCAGACTGTGGCTCACCTCCAGACGCTGCAG GACTGCATCGCCCGCCATCTGCGCGACCTGGACCGCGGGCTCGCCGACGTCCAGGCTCGCCTCGCCTCGCCGCGG GGAGAGGTCGTCGTCAGCCTGACGCTCGTGATGGGAGAGCTCGCGCCCCGGCTCGAGCCCCTCCTCGCCCTGTCG CACATCGTGGCCAGGGTCCAGGAGGCGGCCGAGTCGGACACCTTCCGCTACCTGGAGCTCCTCTTCGACGAGACG GGCGTGGCACAGCTGGCGGGCAAGCCCGGCATCTACGAGTTCCTCGCCCGCATCTTCGTCGACTGTTTCAACGTC TACCTACGCCCCATCCGTCACTGGATGCACGAGGGCAGGCTGCTTCCAGCCGACGAGCTCTTCTTCATCACTGAA CCATCCTCCGGCCACGTCCCGCTGGGCGACACCTGGCACAGCCGCTTCTGCCTGCGTCGGGCGGCGGACGGGGGC CTCCATGCGCCGAGCTTCCTGCAGCCGGCCGCGGGCAAGATCTACAACGCCGGTAAGAACATCGTGGTGCTCAAG CTGTTGGGCAGCCATGATGCGGCGGCCGTCTTGTCCCCGCAGCTCCACGACGACCCGCCTCTCGACTACTATGCG CTTTGCCCCCCCGGCTTCGAGCTTGCCCCGTTCGCAGACCTGTTCGCCGCCGCCTTTGATCGCTGGGTCCGGAGC CAGTATCAGAGGACCTCGGTGACGCTGAAGAACGCGCTCCTGCGAGACTGGGGCCTGTCTGCCTCGCTCGACGCT CTGCGCGCCCTGTACCTCATGTCGGACGGACACGCGGCCGCTGCCTTCTGCGAGGCCCTCTTCGCCAAGCTGGAC GCAACGGATGCCGCCTGGCACGGTCGACATGGCCTCACCGCGGCGGGCCGCGAGGCTTTCGCGTCGCGCCTCGAC CCCAACCGACTGTCCGTCGATTTCGACGCTGCGGCGTCTCGCCTGACCGCATCCGAGTGTCGGTGTTCCGTCAAA AAGGCCCTTCCGGCTGTCCGAGTCGGCTACAGGGTGCCGTGGCCGGTGCAGATGATTGTGTCGGCCGAGAGCGTG TCGCGCTATCAGGCCGTGTTCACGTTGCTCTTGCAAATCAAGAGGGCATCGCACGCCCTCCAAAAGCTCAAAATC CTCGATTACTACTGGACAGACCATGAAAACTGGGGCGAGCGTAGCCTGGTCTATTCCGCGAGGAGTAAACTCCTT TGGTTCTGCTCCACCATCCATGCATATCTCGCGACCCTGGTCCTGGAACCGGTCGAGTCCCGCATGAGGCGCGAA TTGGAAGCTGCCGAGGATATCGACGCCATGGTCGCCGTCCACTCCGGGGCCATGAAGCAGATGATCGATCAGGCG TGCCTCGGAAGCAGCCTCCAGCCCATCCGAGAAGCGATCCTCGACATGTTGGATCTGGCAATCAAGCTCGGACAC AGTCAGAGCCACGCGCCTAGCGAACCCGCACACGGGCAGTCGTCGTCGTCCTTGGCGACTCTGAAGGAGATAGCT ACCGATTTTGATCGCCATCTGCGCTTCGTCGCCGAGGGATTGCGGAGCGTCGCGAGGGCGAGCAGCAGTTCTGCA TCAGCCAAGTGGGAGATTCTGGCCGACATGCTTCAGTCCGACGTCGGGGGCGGGCGATGA |