Protein ID | Hirsu2|6592 |
Gene name | |
Location | Contig_342:10346..12083 |
Strand | + |
Gene length (bp) | 1737 |
Transcript length (bp) | 1671 |
Coding sequence length (bp) | 1671 |
Protein length (aa) | 557 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12756 | zf-C2H2_2 | C2H2 type zinc-finger (2 copies) | 2.5E-28 | 212 | 308 |
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 9.9E-07 | 86 | 109 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 1.4E-06 | 85 | 108 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|G0S920|REI1_CHATD | Cytoplasmic 60S subunit biogenesis factor REI1 homolog OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=CTHT_0044240 PE=3 SV=2 | 1 | 536 | 3.0E-178 |
sp|O59811|REI1_SCHPO | Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1 | 16 | 328 | 2.0E-59 |
sp|Q7TM96|ZN622_RAT | Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=1 SV=2 | 19 | 329 | 2.0E-43 |
sp|Q91VY9|ZN622_MOUSE | Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=1 SV=1 | 20 | 340 | 2.0E-40 |
sp|Q06709|REH1_YEAST | Cytoplasmic 60S subunit biogenesis factor REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1 | 15 | 519 | 2.0E-37 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|G0S920|REI1_CHATD | Cytoplasmic 60S subunit biogenesis factor REI1 homolog OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=CTHT_0044240 PE=3 SV=2 | 1 | 536 | 3.0E-178 |
sp|O59811|REI1_SCHPO | Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1 | 16 | 328 | 2.0E-59 |
sp|Q7TM96|ZN622_RAT | Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=1 SV=2 | 19 | 329 | 2.0E-43 |
sp|Q91VY9|ZN622_MOUSE | Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=1 SV=1 | 20 | 340 | 2.0E-40 |
sp|Q06709|REH1_YEAST | Cytoplasmic 60S subunit biogenesis factor REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1 | 15 | 519 | 2.0E-37 |
sp|Q90Y35|ZN622_CHICK | Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1 | 19 | 180 | 6.0E-24 |
sp|Q969S3|ZN622_HUMAN | Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1 | 212 | 323 | 6.0E-22 |
sp|Q90Y35|ZN622_CHICK | Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1 | 212 | 317 | 2.0E-21 |
sp|P38344|REI1_YEAST | Cytoplasmic 60S subunit biogenesis factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3 | 212 | 326 | 4.0E-21 |
sp|Q969S3|ZN622_HUMAN | Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1 | 19 | 108 | 9.0E-20 |
sp|P38344|REI1_YEAST | Cytoplasmic 60S subunit biogenesis factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3 | 14 | 62 | 6.0E-13 |
sp|O74977|VMS1_SCHPO | VMS1 homolog C1827.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.04 PE=1 SV=1 | 20 | 66 | 1.0E-06 |
sp|Q8AVN9|ZN346_XENLA | Zinc finger protein 346 OS=Xenopus laevis GN=znf346 PE=1 SV=1 | 10 | 203 | 4.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 16 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6592 MASVNAGTGASGTAASHPYTCNTCQVAYRNIDLQKGHMKSDWHRYNLKRRVASLPPISSEVFTSKVLQARAATSA EADKALFERTCDACGKTYYSENAYQNHLLSQKHKQNLSATPHQRHDDETTSVVSSTFSLGEPAALSQDHHIDTDV EDEFNLVIESLQNAKLAQQRSSPVKRPSNPQPRGAEADSNGASNDGASTAAGPEPAWTPNCCLFCNYSSPTVPLN ASHMERFHGMFIPEKPYLADLEGLITHLQRQVGQHHQCLSCGKTKTTIFAVQTHMRDKGHCKIPFSTEQEQLRIG DFYDFRSTYSDGGEDEDEDEDDEESDGDVTLGQQGGAKLGLKRRAQVIGPDGEARDDDDAEGWETDSSVSSLDSA DLTAVPAEGHIHQFERLSKHSHHSRHDPGHRHQLDGWHSRAHRHTHAVFHDDYELHLPSGKSVGHRSLNRYFRQN LARYPTEEEREERLAIEGPGSDREGEGEASEGPNRQIAVRGARGRELLPRGAEGMMGVSNDKRREVRKVQQRGRD AESHRNKKNEWSYGMRANNQKNYYYRYDGGG* |
Coding | >Hirsu2|6592 ATGGCGAGCGTCAACGCCGGCACCGGCGCCTCCGGCACAGCGGCTTCGCACCCCTACACCTGCAACACGTGCCAG GTTGCCTACCGCAACATCGACTTGCAAAAGGGCCATATGAAGAGCGATTGGCACCGCTACAACTTGAAGCGTCGT GTGGCTTCCCTGCCCCCCATCTCCTCCGAAGTCTTCACCAGCAAGGTTCTTCAGGCGCGTGCCGCCACCTCGGCC GAGGCCGACAAGGCTCTCTTTGAGCGCACGTGCGACGCTTGCGGCAAGACTTACTACAGTGAAAATGCCTACCAG AATCACCTCCTCAGCCAGAAGCACAAGCAGAACCTGTCCGCGACGCCGCACCAACGCCACGATGACGAAACTACC TCTGTCGTCAGCTCCACCTTTTCCCTGGGAGAGCCGGCCGCGCTCTCCCAGGACCATCACATCGACACCGATGTC GAGGATGAGTTCAACCTGGTCATCGAAAGCCTGCAGAACGCCAAGCTGGCCCAACAACGCTCCTCTCCCGTCAAG CGCCCCTCCAACCCTCAACCTCGCGGGGCCGAGGCCGACAGCAACGGCGCCTCCAACGACGGCGCCTCCACCGCG GCCGGGCCCGAGCCCGCCTGGACCCCCAACTGCTGCCTCTTCTGCAACTACTCCTCCCCCACTGTCCCCCTCAAC GCCAGCCACATGGAGCGCTTTCACGGCATGTTCATCCCCGAGAAGCCATATCTCGCGGACCTGGAAGGCCTCATC ACCCACCTCCAGCGACAGGTCGGCCAACATCATCAATGTCTGAGTTGCGGCAAGACGAAGACGACCATCTTCGCG GTCCAGACCCACATGCGCGACAAGGGCCATTGCAAGATTCCCTTCAGCACCGAGCAGGAGCAGCTGAGAATCGGA GACTTTTACGACTTCAGGAGCACGTACTCGGACGGCGGCGAGGACGAGGACGAGGACGAGGACGACGAAGAGTCG GACGGCGACGTCACCCTAGGACAACAGGGCGGCGCCAAGCTGGGCTTGAAGCGACGTGCCCAAGTCATCGGTCCG GACGGCGAGGCTCGAGACGACGACGATGCCGAGGGCTGGGAAACGGACAGCTCCGTGTCTTCGCTCGACTCGGCC GACCTGACAGCTGTGCCCGCCGAGGGGCACATTCACCAGTTTGAGCGGCTCAGCAAGCACTCACACCATTCGCGC CACGACCCGGGACACCGCCATCAGCTGGACGGCTGGCACTCGCGGGCGCACAGGCACACTCATGCCGTCTTCCAC GACGACTACGAGCTCCACCTGCCGTCGGGCAAGTCCGTCGGCCACCGTTCGCTGAACCGGTATTTCCGGCAAAAC CTCGCCCGCTATCCCACGGAAGAGGAGCGGGAGGAGCGGCTCGCCATCGAGGGGCCCGGATCCGACCGGGAAGGC GAGGGAGAGGCGTCCGAGGGCCCCAACAGGCAGATTGCCGTCCGCGGCGCCCGCGGCCGAGAGTTGCTGCCACGC GGGGCCGAGGGCATGATGGGCGTCTCGAACGACAAGAGGCGCGAGGTACGCAAGGTGCAACAGCGCGGCCGAGAC GCCGAGAGCCATCGGAACAAGAAGAACGAGTGGTCGTACGGGATGCGGGCCAACAACCAGAAGAACTACTACTAC CGCTACGACGGCGGCGGTTAG |
Transcript | >Hirsu2|6592 ATGGCGAGCGTCAACGCCGGCACCGGCGCCTCCGGCACAGCGGCTTCGCACCCCTACACCTGCAACACGTGCCAG GTTGCCTACCGCAACATCGACTTGCAAAAGGGCCATATGAAGAGCGATTGGCACCGCTACAACTTGAAGCGTCGT GTGGCTTCCCTGCCCCCCATCTCCTCCGAAGTCTTCACCAGCAAGGTTCTTCAGGCGCGTGCCGCCACCTCGGCC GAGGCCGACAAGGCTCTCTTTGAGCGCACGTGCGACGCTTGCGGCAAGACTTACTACAGTGAAAATGCCTACCAG AATCACCTCCTCAGCCAGAAGCACAAGCAGAACCTGTCCGCGACGCCGCACCAACGCCACGATGACGAAACTACC TCTGTCGTCAGCTCCACCTTTTCCCTGGGAGAGCCGGCCGCGCTCTCCCAGGACCATCACATCGACACCGATGTC GAGGATGAGTTCAACCTGGTCATCGAAAGCCTGCAGAACGCCAAGCTGGCCCAACAACGCTCCTCTCCCGTCAAG CGCCCCTCCAACCCTCAACCTCGCGGGGCCGAGGCCGACAGCAACGGCGCCTCCAACGACGGCGCCTCCACCGCG GCCGGGCCCGAGCCCGCCTGGACCCCCAACTGCTGCCTCTTCTGCAACTACTCCTCCCCCACTGTCCCCCTCAAC GCCAGCCACATGGAGCGCTTTCACGGCATGTTCATCCCCGAGAAGCCATATCTCGCGGACCTGGAAGGCCTCATC ACCCACCTCCAGCGACAGGTCGGCCAACATCATCAATGTCTGAGTTGCGGCAAGACGAAGACGACCATCTTCGCG GTCCAGACCCACATGCGCGACAAGGGCCATTGCAAGATTCCCTTCAGCACCGAGCAGGAGCAGCTGAGAATCGGA GACTTTTACGACTTCAGGAGCACGTACTCGGACGGCGGCGAGGACGAGGACGAGGACGAGGACGACGAAGAGTCG GACGGCGACGTCACCCTAGGACAACAGGGCGGCGCCAAGCTGGGCTTGAAGCGACGTGCCCAAGTCATCGGTCCG GACGGCGAGGCTCGAGACGACGACGATGCCGAGGGCTGGGAAACGGACAGCTCCGTGTCTTCGCTCGACTCGGCC GACCTGACAGCTGTGCCCGCCGAGGGGCACATTCACCAGTTTGAGCGGCTCAGCAAGCACTCACACCATTCGCGC CACGACCCGGGACACCGCCATCAGCTGGACGGCTGGCACTCGCGGGCGCACAGGCACACTCATGCCGTCTTCCAC GACGACTACGAGCTCCACCTGCCGTCGGGCAAGTCCGTCGGCCACCGTTCGCTGAACCGGTATTTCCGGCAAAAC CTCGCCCGCTATCCCACGGAAGAGGAGCGGGAGGAGCGGCTCGCCATCGAGGGGCCCGGATCCGACCGGGAAGGC GAGGGAGAGGCGTCCGAGGGCCCCAACAGGCAGATTGCCGTCCGCGGCGCCCGCGGCCGAGAGTTGCTGCCACGC GGGGCCGAGGGCATGATGGGCGTCTCGAACGACAAGAGGCGCGAGGTACGCAAGGTGCAACAGCGCGGCCGAGAC GCCGAGAGCCATCGGAACAAGAAGAACGAGTGGTCGTACGGGATGCGGGCCAACAACCAGAAGAACTACTACTAC CGCTACGACGGCGGCGGTTAG |
Gene | >Hirsu2|6592 ATGGCGAGCGTCAACGCCGGCACCGGCGCCTCCGGCACAGCGGCTTCGCACCCCTACACCTGCAACACGTGCCAG GTTGCCTACCGCAACATCGACTTGCAAAAGGGCCATATGAAGAGCGATTGGCAGTCAGTGCCTCCCAGCCCCAGC CCCTTTGCTGACGCCCCTGCTGATGGTCAGCCTCGCCGGTCTAGCCGCTACAACTTGAAGCGTCGTGTGGCTTCC CTGCCCCCCATCTCCTCCGAAGTCTTCACCAGCAAGGTTCTTCAGGCGCGTGCCGCCACCTCGGCCGAGGCCGAC AAGGCTCTCTTTGAGCGCACGTGCGACGCTTGCGGCAAGACTTACTACAGTGAAAATGCCTACCAGAATCACCTC CTCAGCCAGAAGCACAAGCAGAACCTGTCCGCGACGCCGCACCAACGCCACGATGACGAAACTACCTCTGTCGTC AGCTCCACCTTTTCCCTGGGAGAGCCGGCCGCGCTCTCCCAGGACCATCACATCGACACCGATGTCGAGGATGAG TTCAACCTGGTCATCGAAAGCCTGCAGAACGCCAAGCTGGCCCAACAACGCTCCTCTCCCGTCAAGCGCCCCTCC AACCCTCAACCTCGCGGGGCCGAGGCCGACAGCAACGGCGCCTCCAACGACGGCGCCTCCACCGCGGCCGGGCCC GAGCCCGCCTGGACCCCCAACTGCTGCCTCTTCTGCAACTACTCCTCCCCCACTGTCCCCCTCAACGCCAGCCAC ATGGAGCGCTTTCACGGCATGTTCATCCCCGAGAAGCCATATCTCGCGGACCTGGAAGGCCTCATCACCCACCTC CAGCGACAGGTCGGCCAACATCATCAATGTCTGAGTTGCGGCAAGACGAAGACGACCATCTTCGCGGTCCAGACC CACATGCGCGACAAGGGCCATTGCAAGATTCCCTTCAGCACCGAGCAGGAGCAGCTGAGAATCGGAGACTTTTAC GACTTCAGGAGCACGTACTCGGACGGCGGCGAGGACGAGGACGAGGACGAGGACGACGAAGAGTCGGACGGCGAC GTCACCCTAGGACAACAGGGCGGCGCCAAGCTGGGCTTGAAGCGACGTGCCCAAGTCATCGGTCCGGACGGCGAG GCTCGAGACGACGACGATGCCGAGGGCTGGGAAACGGACAGCTCCGTGTCTTCGCTCGACTCGGCCGACCTGACA GCTGTGCCCGCCGAGGGGCACATTCACCAGTTTGAGCGGCTCAGCAAGCACTCACACCATTCGCGCCACGACCCG GGACACCGCCATCAGCTGGACGGCTGGCACTCGCGGGCGCACAGGCACACTCATGCCGTCTTCCACGACGACTAC GAGCTCCACCTGCCGTCGGGCAAGTCCGTCGGCCACCGTTCGCTGAACCGGTATTTCCGGCAAAACCTCGCCCGC TATCCCACGGAAGAGGAGCGGGAGGAGCGGCTCGCCATCGAGGGGCCCGGATCCGACCGGGAAGGCGAGGGAGAG GCGTCCGAGGGCCCCAACAGGCAGATTGCCGTCCGCGGCGCCCGCGGCCGAGAGTTGCTGCCACGCGGGGCCGAG GGCATGATGGGCGTCTCGAACGACAAGAGGCGCGAGGTACGCAAGGTGCAACAGCGCGGCCGAGACGCCGAGAGC CATCGGAACAAGAAGAACGAGTGGTCGTACGGGATGCGGGCCAACAACCAGAAGAACTACTACTACCGCTACGAC GGCGGCGGTTAG |