© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|6530 |
| Gene name | |
| Location | Contig_338:2552..2900 |
| Strand | + |
| Gene length (bp) | 348 |
| Transcript length (bp) | 225 |
| Coding sequence length (bp) | 225 |
| Protein length (aa) | 75 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0562 | 0.0457 | 0.9673 | 0.0422 | 0.0539 | 0.0038 | 0.0294 | 0.0607 | 0.0507 | 0.0013 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 29 | 0.999745 |
| Orthofinder run ID | 4 |
| Orthogroup | 10164 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|6530 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6530 MKAFTALVLLATAAMALPAQEDQGKLAKRDCWWTGVQYDSWAERGCSQYGRFEAGRQYAYENGQYGERYYCCNY* |
| Coding | >Hirsu2|6530 ATGAAGGCTTTCACCGCCTTGGTCCTCCTCGCCACAGCCGCCATGGCCTTGCCTGCTCAAGAGGACCAAGGCAAG CTGGCCAAGCGCGACTGCTGGTGGACCGGCGTGCAGTACGACTCCTGGGCCGAGCGCGGATGCTCCCAGTACGGC CGCTTTGAGGCGGGCCGCCAGTATGCCTACGAGAATGGGCAATACGGCGAGAGGTATTACTGCTGCAACTATTGA |
| Transcript | >Hirsu2|6530 ATGAAGGCTTTCACCGCCTTGGTCCTCCTCGCCACAGCCGCCATGGCCTTGCCTGCTCAAGAGGACCAAGGCAAG CTGGCCAAGCGCGACTGCTGGTGGACCGGCGTGCAGTACGACTCCTGGGCCGAGCGCGGATGCTCCCAGTACGGC CGCTTTGAGGCGGGCCGCCAGTATGCCTACGAGAATGGGCAATACGGCGAGAGGTATTACTGCTGCAACTATTGA |
| Gene | >Hirsu2|6530 ATGAAGGCTTTCACCGCCTTGGTCCTCCTCGCCACAGCCGCCATGGCCTTGCCTGCTCAAGAGGACCAAGGCAAG CTGGCCAAGCGCGACTGCTGGTGGACCGGCGTGCAGTACGACTCCTGGGCCGAGCGCGGATGCTCCCAGTACGGC CGCTTTGTACGTGTTCGAAGACGGATGTTCGGCCGAGCGGGAGAGATGCTGACAAGAAGGGATTGTGCAGGAGGC GGGCCGCCAGTATGCCTACGAGGTGCGTGGCCGATCCACCCGAGGGGGACTTGTCTCGAGGTCACTAACTCGATG TTATAGAATGGGCAATACGGCGAGAGGTATTACTGCTGCAACTATTGA |